Wall clock time and date at job start Mon Mar 30 2020 00:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38294 * 119.94468 * 2 1 4 4 C 1.38125 * 120.05568 * 180.02562 * 3 2 1 5 5 C 1.38746 * 119.94430 * 359.97438 * 4 3 2 6 6 O 1.35903 * 120.05400 * 179.97438 * 5 4 3 7 7 C 1.38715 * 119.89317 * 359.97438 * 5 4 3 8 8 C 1.50696 * 120.03045 * 179.97438 * 7 5 4 9 9 N 1.46899 * 109.46868 * 285.00037 * 8 7 5 10 10 C 1.46897 * 111.00155 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47460 * 179.97438 * 10 9 8 12 12 H 1.08998 * 109.47183 * 305.00348 * 11 10 9 13 13 C 1.52999 * 109.47141 * 65.00083 * 11 10 9 14 14 C 1.53004 * 109.47188 * 185.00295 * 11 10 9 15 15 C 1.50699 * 109.46847 * 175.00072 * 14 11 10 16 16 H 1.08002 * 120.00511 * 0.02562 * 15 14 11 17 17 C 1.37884 * 119.99783 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99573 * 180.27665 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46758 * 89.99934 * 19 17 15 21 21 H 1.48499 * 109.47026 * 209.99782 * 19 17 15 22 22 H 1.48496 * 109.47474 * 329.99818 * 19 17 15 23 23 C 1.38164 * 119.94004 * 0.25764 * 7 5 4 24 24 H 1.09003 * 109.47239 * 90.00648 * 1 2 3 25 25 H 1.08999 * 109.47163 * 210.00373 * 1 2 3 26 26 H 1.08996 * 109.47359 * 330.00489 * 1 2 3 27 27 H 1.07997 * 119.97035 * 359.96993 * 3 2 1 28 28 H 1.08002 * 120.02058 * 179.97438 * 4 3 2 29 29 H 0.96699 * 113.99190 * 270.01428 * 6 5 4 30 30 H 1.09000 * 109.46869 * 165.00413 * 8 7 5 31 31 H 1.09001 * 109.47478 * 44.99793 * 8 7 5 32 32 H 1.00902 * 111.00465 * 303.95679 * 9 8 7 33 33 H 1.08999 * 109.46951 * 59.99895 * 10 9 8 34 34 H 1.09002 * 109.47543 * 300.00263 * 10 9 8 35 35 H 1.09001 * 109.47203 * 300.00417 * 13 11 10 36 36 H 1.08998 * 109.46866 * 60.00071 * 13 11 10 37 37 H 1.08998 * 109.47348 * 179.97438 * 13 11 10 38 38 H 1.08992 * 109.47264 * 55.00246 * 14 11 10 39 39 H 1.09005 * 109.46510 * 294.99833 * 14 11 10 40 40 H 0.97004 * 119.99485 * 179.72881 * 18 17 15 41 41 H 1.07997 * 119.97035 * 179.74398 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2010 -0.0005 5 6 4.2734 0.0001 -0.0005 6 8 5.6324 0.0001 -0.0016 7 6 3.5787 -1.2006 0.0005 8 6 4.3303 -2.5067 0.0000 9 7 4.8837 -2.7526 -1.3384 10 6 5.6254 -4.0200 -1.3768 11 6 6.1848 -4.2412 -2.7836 12 1 5.3732 -4.1904 -3.5095 13 6 7.2184 -3.1578 -3.0976 14 6 6.8497 -5.6173 -2.8575 15 6 7.2917 -5.8861 -4.2728 16 1 7.1164 -5.1492 -5.0426 17 6 7.9210 -7.0726 -4.5849 18 7 8.3117 -7.3050 -5.8190 19 14 8.2262 -8.3464 -3.2530 20 1 7.0657 -9.2697 -3.1760 21 1 9.4523 -9.1185 -3.5782 22 1 8.4032 -7.6637 -1.9463 23 6 2.1971 -1.1979 -0.0038 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5137 27 1 1.6559 2.1328 -0.0005 28 1 4.1170 2.1372 -0.0010 29 1 6.0249 0.0000 -0.8853 30 1 3.6514 -3.3166 0.2668 31 1 5.1423 -2.4591 0.7256 32 1 4.1573 -2.7370 -2.0386 33 1 4.9559 -4.8407 -1.1192 34 1 6.4463 -3.9825 -0.6607 35 1 6.7447 -2.1775 -3.0449 36 1 8.0299 -3.2086 -2.3717 37 1 7.6173 -3.3156 -4.0996 38 1 6.1375 -6.3820 -2.5478 39 1 7.7159 -5.6381 -2.1961 40 1 8.7579 -8.1380 -6.0377 41 1 1.6558 -2.1324 -0.0071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877652188.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:36 Heat of formation + Delta-G solvation = -63.165177 kcal Electronic energy + Delta-G solvation = -19271.711338 eV Core-core repulsion = 16342.724662 eV Total energy + Delta-G solvation = -2928.986676 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.87404 -38.32890 -37.70425 -35.83372 -34.21353 -32.55943 -32.02052 -29.42227 -27.58163 -26.96228 -25.55454 -23.64121 -23.10772 -21.66417 -20.68640 -19.10259 -18.91615 -17.17370 -16.68316 -16.42613 -16.24678 -15.96868 -15.59945 -15.27553 -14.89931 -14.59554 -14.40862 -14.30321 -13.84781 -13.63626 -13.41870 -13.39282 -13.03004 -12.83028 -12.47863 -12.43670 -12.39564 -12.15125 -12.10135 -11.79752 -11.45617 -11.30972 -11.15907 -11.01104 -10.73258 -9.82377 -9.34689 -9.23703 -8.26039 -6.28163 0.31801 0.39612 1.35415 1.37754 1.49400 2.37726 2.64255 3.09307 3.34127 3.50512 3.83068 3.91282 4.05416 4.14143 4.27011 4.37063 4.46412 4.49833 4.57886 4.72037 4.80110 4.86891 4.87433 4.91751 4.94083 4.96718 5.11987 5.14822 5.25564 5.39323 5.40029 5.42777 5.55783 5.59856 5.67069 5.72412 5.73548 5.96445 6.07551 6.34872 6.46567 6.79636 6.93134 7.35395 8.90779 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.003424 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.073772 B = 8176.442243 C = 8417.571699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.105 4.105 3 C -0.108 4.108 4 C -0.155 4.155 5 C 0.108 3.892 6 O -0.507 6.507 7 C -0.118 4.118 8 C 0.108 3.892 9 N -0.677 5.677 10 C 0.076 3.924 11 C -0.069 4.069 12 H 0.050 0.950 13 C -0.114 4.114 14 C -0.007 4.007 15 C -0.518 4.518 16 H 0.035 0.965 17 C 0.001 3.999 18 N -0.954 5.954 19 Si 0.948 3.052 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.248 1.248 23 C -0.108 4.108 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.403 0.597 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.341 0.659 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.017 0.983 40 H 0.264 0.736 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 16.362 15.166 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.126 4.126 4 C -0.174 4.174 5 C 0.063 3.937 6 O -0.319 6.319 7 C -0.119 4.119 8 C -0.020 4.020 9 N -0.308 5.308 10 C -0.053 4.053 11 C -0.088 4.088 12 H 0.068 0.932 13 C -0.172 4.172 14 C -0.045 4.045 15 C -0.556 4.556 16 H 0.053 0.947 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.771 3.229 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.171 1.171 23 C -0.127 4.127 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.165 0.835 28 H 0.156 0.844 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.159 0.841 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.416 16.614 15.789 27.077 hybrid contribution 0.006 -1.526 -0.636 1.653 sum -14.410 15.088 15.153 25.786 Atomic orbital electron populations 1.20810 0.89257 1.03663 1.03039 1.20221 0.97580 0.92686 0.99989 1.21211 0.93296 0.98664 0.99391 1.21633 0.95215 0.97882 1.02649 1.18477 0.83351 0.92022 0.99873 1.84677 1.15916 1.96381 1.34928 1.20202 0.94069 0.94731 1.02889 1.20670 0.97049 0.92680 0.91634 1.60408 1.30459 1.34733 1.05183 1.21902 0.97128 0.89315 0.96953 1.20875 0.97531 0.95103 0.95264 0.93164 1.21487 0.97936 0.98113 0.99639 1.19573 0.95665 0.94476 0.94810 1.21459 1.36991 1.02227 0.94909 0.94667 1.26002 0.95199 1.00735 0.97600 1.70075 1.42370 1.26389 1.20735 0.85697 0.77892 0.78879 0.80392 1.19295 1.21225 1.17119 1.21084 0.92623 0.98803 1.00193 0.90533 0.91026 0.90292 0.83542 0.84437 0.73826 0.94043 0.90878 0.84085 0.95409 0.91316 0.91293 0.93886 0.95561 0.96793 0.96458 0.92692 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.23 0.71 -0.50 16 2 C -0.10 -1.73 5.88 -19.85 -0.12 -1.85 16 3 C -0.11 -1.74 9.69 22.26 0.22 -1.53 16 4 C -0.16 -2.96 9.99 22.36 0.22 -2.74 16 5 C 0.11 2.44 6.68 22.51 0.15 2.59 16 6 O -0.51 -11.82 12.84 -92.46 -1.19 -13.01 16 7 C -0.12 -2.61 5.41 -19.77 -0.11 -2.71 16 8 C 0.11 2.51 5.42 85.56 0.46 2.97 16 9 N -0.68 -17.23 5.94 -517.95 -3.08 -20.30 16 10 C 0.08 2.30 5.07 86.30 0.44 2.74 16 11 C -0.07 -2.62 2.48 -10.79 -0.03 -2.65 16 12 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 13 C -0.11 -4.25 8.89 71.98 0.64 -3.61 16 14 C -0.01 -0.34 3.52 29.85 0.10 -0.24 16 15 C -0.52 -29.88 8.96 25.60 0.23 -29.65 16 16 H 0.04 2.24 7.30 -2.91 -0.02 2.21 16 17 C 0.00 0.04 5.47 84.66 0.46 0.50 16 18 N -0.95 -60.63 13.96 21.45 0.30 -60.34 16 19 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 22 H -0.25 -10.91 6.54 99.48 0.65 -10.25 16 23 C -0.11 -2.06 9.32 22.25 0.21 -1.86 16 24 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 26 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 27 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.40 7.46 9.06 -74.06 -0.67 6.79 16 30 H 0.04 0.90 7.95 -2.39 -0.02 0.88 16 31 H 0.07 1.86 8.01 -2.39 -0.02 1.84 16 32 H 0.34 8.49 8.72 -89.69 -0.78 7.70 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.18 7.75 -2.39 -0.02 2.16 16 36 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.03 1.11 6.95 -2.39 -0.02 1.10 16 38 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 39 H 0.02 0.80 7.20 -2.38 -0.02 0.78 16 40 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.13 2.15 8.00 -2.91 -0.02 2.13 16 Total: -1.00 -67.49 337.57 1.02 -66.47 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.50 Total: 18.96 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 3.60 Total: -38.52 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.78 Total: -80.64 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.19 Total: -13.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -67.49 1.02 -66.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877652188.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.301 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds