Wall clock time and date at job start Mon Mar 30 2020 00:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47157 * 200.60680 * 3 2 1 5 5 O 1.42902 * 109.51854 * 300.12573 * 4 3 2 6 6 C 1.53119 * 109.52407 * 180.02562 * 4 3 2 7 7 C 1.53033 * 109.28014 * 182.37563 * 6 4 3 8 8 N 1.46850 * 109.52170 * 59.17735 * 7 6 4 9 9 C 1.46907 * 110.99797 * 174.16448 * 8 7 6 10 10 C 1.53000 * 109.46762 * 175.90922 * 9 8 7 11 11 C 1.50698 * 115.55084 * 53.70320 * 10 9 8 12 12 H 1.08005 * 120.00130 * 215.72645 * 11 10 9 13 13 C 1.37878 * 120.00279 * 35.72308 * 11 10 9 14 14 N 1.31519 * 119.99823 * 356.09230 * 13 11 10 15 15 Si 1.86795 * 120.00254 * 176.36622 * 13 11 10 16 16 H 1.48498 * 109.47249 * 65.00011 * 15 13 11 17 17 H 1.48498 * 109.47164 * 185.00392 * 15 13 11 18 18 H 1.48502 * 109.47125 * 305.00266 * 15 13 11 19 19 C 1.53005 * 117.49646 * 199.36660 * 10 9 8 20 20 C 1.52999 * 117.50101 * 268.02819 * 10 9 8 21 21 C 1.46848 * 111.20014 * 298.25637 * 8 7 6 22 22 C 1.53041 * 109.51818 * 61.74375 * 21 8 7 23 23 H 4.44648 * 5.63469 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.47503 * 80.60569 * 3 2 1 25 25 H 1.09006 * 109.47428 * 320.60456 * 3 2 1 26 26 H 0.96699 * 114.00153 * 59.87389 * 5 4 3 27 27 H 1.09001 * 109.50395 * 62.43721 * 6 4 3 28 28 H 1.09001 * 109.53397 * 302.33511 * 6 4 3 29 29 H 1.09008 * 109.45999 * 299.16621 * 7 6 4 30 30 H 1.09000 * 109.45529 * 179.18891 * 7 6 4 31 31 H 1.08994 * 109.47114 * 55.90809 * 9 8 7 32 32 H 1.08997 * 109.46668 * 295.90630 * 9 8 7 33 33 H 0.96995 * 119.99991 * 184.99275 * 14 13 11 34 34 H 1.08991 * 117.50021 * 215.00057 * 19 10 9 35 35 H 1.09003 * 117.49606 * 0.03265 * 19 10 9 36 36 H 1.08998 * 117.49783 * 359.97438 * 20 10 9 37 37 H 1.08992 * 117.49896 * 144.97226 * 20 10 9 38 38 H 1.08996 * 109.46032 * 181.75584 * 21 8 7 39 39 H 1.08999 * 109.46472 * 301.72891 * 21 8 7 40 40 H 1.09002 * 109.50199 * 180.87941 * 22 21 8 41 41 H 1.08995 * 109.50433 * 60.75919 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.3511 0.5077 5 8 2.6766 2.3932 -0.3450 6 6 4.6865 1.3533 0.5076 7 6 5.1899 2.6838 1.0717 8 7 4.6824 2.8608 2.4383 9 6 5.2569 4.0604 3.0621 10 6 4.6296 4.2678 4.4420 11 6 4.7016 3.0852 5.3732 12 1 3.8858 2.8809 6.0508 13 6 5.8090 2.2638 5.3601 14 7 6.7677 2.4665 4.4829 15 14 5.9440 0.8585 6.5833 16 1 4.8738 -0.1355 6.3154 17 1 7.2711 0.2068 6.4440 18 1 5.7946 1.3870 7.9630 19 6 4.7326 5.6627 5.0624 20 6 3.3894 5.1597 4.5274 21 6 3.2148 2.9093 2.4577 22 6 2.6525 1.5855 1.9348 23 1 -1.0503 -0.0003 -0.0003 24 1 3.0094 -0.1669 -1.0139 25 1 3.0097 -0.7934 0.6522 26 1 1.7126 2.4503 -0.3931 27 1 5.0505 1.2296 -0.5124 28 1 5.0522 0.5340 1.1265 29 1 4.8358 3.5017 0.4441 30 1 6.2798 2.6828 1.0864 31 1 5.0527 4.9287 2.4358 32 1 6.3344 3.9341 3.1680 33 1 7.5114 1.8465 4.4254 34 1 4.8523 5.7249 6.1439 35 1 5.2468 6.4326 4.4871 36 1 3.0206 5.5990 3.6006 37 1 2.6254 4.8908 5.2568 38 1 2.8703 3.0722 3.4788 39 1 2.8700 3.7261 1.8235 40 1 1.5633 1.6275 1.9346 41 1 2.9857 0.7698 2.5765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880482221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:52 Heat of formation + Delta-G solvation = 35.959607 kcal Electronic energy + Delta-G solvation = -21092.595045 eV Core-core repulsion = 18167.906742 eV Total energy + Delta-G solvation = -2924.688303 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.39661 -37.14243 -34.88036 -33.59626 -31.98192 -31.34911 -30.18566 -28.17089 -25.49056 -24.43284 -22.70314 -21.46346 -20.99486 -19.26714 -18.75647 -18.04534 -16.22955 -16.05217 -15.32214 -14.61867 -14.52500 -14.20176 -13.97419 -13.71509 -13.47257 -13.21041 -12.62335 -12.49853 -12.02874 -11.72710 -11.49354 -11.15458 -10.93609 -10.87215 -10.77782 -10.60222 -10.47863 -10.41520 -10.29689 -10.17456 -9.94958 -9.66687 -9.38044 -9.18571 -8.77807 -8.49395 -8.02207 -6.91035 -5.75578 -3.87481 2.77015 2.83064 3.37799 3.42156 3.45467 4.32826 4.46086 4.50703 4.93466 5.05626 5.17406 5.22873 5.32393 5.67440 5.69033 5.76427 5.84965 5.96513 6.07252 6.15301 6.17608 6.21216 6.33490 6.36027 6.44612 6.57101 6.66162 6.69963 6.75035 6.81884 6.91256 6.99915 7.00538 7.30950 7.40419 7.58242 7.74829 7.86690 8.14538 8.37145 8.44421 8.66101 9.06892 9.72675 11.18653 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.006975 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.888393 B = 4013.505720 C = 4457.635183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.176 4.176 3 C -0.043 4.043 4 C 0.140 3.860 5 O -0.554 6.554 6 C -0.096 4.096 7 C 0.064 3.936 8 N -0.489 5.489 9 C 0.111 3.889 10 C 0.063 3.937 11 C -0.480 4.480 12 H 0.052 0.948 13 C 0.089 3.911 14 N -0.863 5.863 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.281 1.281 19 C -0.210 4.210 20 C -0.219 4.219 21 C 0.064 3.936 22 C -0.136 4.136 23 H 0.216 0.784 24 H 0.090 0.910 25 H 0.096 0.904 26 H 0.368 0.632 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.069 0.931 31 H -0.023 1.023 32 H 0.118 0.882 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.012 0.988 40 H 0.056 0.944 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.733 -3.416 -8.850 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.176 4.176 3 C -0.080 4.080 4 C 0.099 3.901 5 O -0.360 6.360 6 C -0.134 4.134 7 C -0.065 4.065 8 N -0.212 5.212 9 C -0.016 4.016 10 C 0.063 3.937 11 C -0.518 4.518 12 H 0.070 0.930 13 C -0.115 4.115 14 N -0.499 5.499 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.206 1.206 19 C -0.249 4.249 20 C -0.257 4.257 21 C -0.064 4.064 22 C -0.174 4.174 23 H 0.232 0.768 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.214 0.786 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.088 0.912 31 H -0.006 1.006 32 H 0.136 0.864 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.688 -3.776 -8.678 11.042 hybrid contribution -1.182 -0.180 0.259 1.223 sum -6.871 -3.955 -8.419 11.564 Atomic orbital electron populations 1.24853 0.95880 1.00939 1.01989 1.23092 0.94475 1.00338 0.99673 1.19610 0.85061 1.00140 1.03176 1.21279 0.95098 0.84181 0.89537 1.86537 1.25875 1.54897 1.68660 1.21548 0.91146 1.00105 1.00573 1.21855 0.99527 0.94939 0.90137 1.61680 1.04441 1.40444 1.14664 1.21778 1.02987 0.85730 0.91134 1.19026 0.92197 0.88739 0.93777 1.20215 1.02619 1.09973 1.18953 0.93009 1.24753 0.95310 0.96557 0.94912 1.69793 1.10647 1.35831 1.33667 0.86752 0.77018 0.82767 0.81843 1.20534 1.21481 1.20641 1.23018 1.00303 1.02118 0.99432 1.22966 0.92108 1.09739 1.00866 1.21998 0.89672 0.93551 1.01172 1.22244 0.99058 1.00787 0.95335 0.76762 0.89182 0.88561 0.78575 0.91882 0.89788 0.96030 0.91247 1.00552 0.86448 0.93313 0.90548 0.91996 0.91936 0.90944 0.88996 0.96996 0.92579 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.18 -2.23 11.12 -37.12 -0.41 -2.64 16 3 C -0.04 -0.54 5.00 -29.52 -0.15 -0.69 16 4 C 0.14 2.09 0.73 -90.50 -0.07 2.03 16 5 O -0.55 -8.51 11.81 -35.23 -0.42 -8.93 16 6 C -0.10 -1.53 5.11 -26.65 -0.14 -1.67 16 7 C 0.06 1.22 5.33 -3.83 -0.02 1.20 16 8 N -0.49 -10.62 4.13 -234.66 -0.97 -11.59 16 9 C 0.11 2.63 4.07 -3.82 -0.02 2.61 16 10 C 0.06 1.55 1.14 -155.66 -0.18 1.37 16 11 C -0.48 -12.79 8.16 -34.44 -0.28 -13.07 16 12 H 0.05 1.40 7.82 -52.48 -0.41 0.99 16 13 C 0.09 2.35 5.30 -17.82 -0.09 2.25 16 14 N -0.86 -23.03 10.15 55.43 0.56 -22.47 16 15 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.21 -4.82 9.96 -26.69 -0.27 -5.08 16 20 C -0.22 -4.84 8.20 -26.69 -0.22 -5.06 16 21 C 0.06 1.30 4.60 -3.83 -0.02 1.28 16 22 C -0.14 -2.32 4.79 -26.65 -0.13 -2.45 16 23 H 0.22 1.64 7.80 -54.08 -0.42 1.22 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.37 4.75 8.09 45.56 0.37 5.12 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.02 0.43 7.76 -51.92 -0.40 0.02 16 30 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 31 H -0.02 -0.55 8.08 -51.93 -0.42 -0.97 16 32 H 0.12 3.06 5.96 -51.93 -0.31 2.75 16 33 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 34 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.09 2.05 5.27 -51.93 -0.27 1.78 16 39 H 0.01 0.25 7.76 -51.93 -0.40 -0.16 16 40 H 0.06 0.88 7.34 -51.93 -0.38 0.50 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 325.30 15.07 4.90 4.90 Total: -1.00 -27.89 325.30 -8.37 -36.26 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -6.01 Total: 7.71 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.41 Total: -21.79 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.41 Total: -34.06 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.42 Total: -8.93 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.89 -8.37 -36.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880482221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.223 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds