Wall clock time and date at job start Mon Mar 30 2020 00:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47157 * 200.60680 * 3 2 1 5 5 O 1.42902 * 109.51854 * 300.12573 * 4 3 2 6 6 C 1.53119 * 109.52407 * 180.02562 * 4 3 2 7 7 C 1.53033 * 109.28014 * 182.37563 * 6 4 3 8 8 N 1.46850 * 109.52170 * 59.17735 * 7 6 4 9 9 C 1.46907 * 110.99797 * 174.16448 * 8 7 6 10 10 C 1.53000 * 109.46762 * 175.90922 * 9 8 7 11 11 C 1.50698 * 115.55084 * 53.70320 * 10 9 8 12 12 H 1.08005 * 120.00130 * 215.72645 * 11 10 9 13 13 C 1.37878 * 120.00279 * 35.72308 * 11 10 9 14 14 N 1.31519 * 119.99823 * 356.09230 * 13 11 10 15 15 Si 1.86795 * 120.00254 * 176.36622 * 13 11 10 16 16 H 1.48498 * 109.47249 * 65.00011 * 15 13 11 17 17 H 1.48498 * 109.47164 * 185.00392 * 15 13 11 18 18 H 1.48502 * 109.47125 * 305.00266 * 15 13 11 19 19 C 1.53005 * 117.49646 * 199.36660 * 10 9 8 20 20 C 1.52999 * 117.50101 * 268.02819 * 10 9 8 21 21 C 1.46848 * 111.20014 * 298.25637 * 8 7 6 22 22 C 1.53041 * 109.51818 * 61.74375 * 21 8 7 23 23 H 4.44648 * 5.63469 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.47503 * 80.60569 * 3 2 1 25 25 H 1.09006 * 109.47428 * 320.60456 * 3 2 1 26 26 H 0.96699 * 114.00153 * 59.87389 * 5 4 3 27 27 H 1.09001 * 109.50395 * 62.43721 * 6 4 3 28 28 H 1.09001 * 109.53397 * 302.33511 * 6 4 3 29 29 H 1.09008 * 109.45999 * 299.16621 * 7 6 4 30 30 H 1.09000 * 109.45529 * 179.18891 * 7 6 4 31 31 H 1.08994 * 109.47114 * 55.90809 * 9 8 7 32 32 H 1.08997 * 109.46668 * 295.90630 * 9 8 7 33 33 H 0.96995 * 119.99991 * 184.99275 * 14 13 11 34 34 H 1.08991 * 117.50021 * 215.00057 * 19 10 9 35 35 H 1.09003 * 117.49606 * 0.03265 * 19 10 9 36 36 H 1.08998 * 117.49783 * 359.97438 * 20 10 9 37 37 H 1.08992 * 117.49896 * 144.97226 * 20 10 9 38 38 H 1.08996 * 109.46032 * 181.75584 * 21 8 7 39 39 H 1.08999 * 109.46472 * 301.72891 * 21 8 7 40 40 H 1.09002 * 109.50199 * 180.87941 * 22 21 8 41 41 H 1.08995 * 109.50433 * 60.75919 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1553 1.3511 0.5077 5 8 2.6766 2.3932 -0.3450 6 6 4.6865 1.3533 0.5076 7 6 5.1899 2.6838 1.0717 8 7 4.6824 2.8608 2.4383 9 6 5.2569 4.0604 3.0621 10 6 4.6296 4.2678 4.4420 11 6 4.7016 3.0852 5.3732 12 1 3.8858 2.8809 6.0508 13 6 5.8090 2.2638 5.3601 14 7 6.7677 2.4665 4.4829 15 14 5.9440 0.8585 6.5833 16 1 4.8738 -0.1355 6.3154 17 1 7.2711 0.2068 6.4440 18 1 5.7946 1.3870 7.9630 19 6 4.7326 5.6627 5.0624 20 6 3.3894 5.1597 4.5274 21 6 3.2148 2.9093 2.4577 22 6 2.6525 1.5855 1.9348 23 1 -1.0503 -0.0003 -0.0003 24 1 3.0094 -0.1669 -1.0139 25 1 3.0097 -0.7934 0.6522 26 1 1.7126 2.4503 -0.3931 27 1 5.0505 1.2296 -0.5124 28 1 5.0522 0.5340 1.1265 29 1 4.8358 3.5017 0.4441 30 1 6.2798 2.6828 1.0864 31 1 5.0527 4.9287 2.4358 32 1 6.3344 3.9341 3.1680 33 1 7.5114 1.8465 4.4254 34 1 4.8523 5.7249 6.1439 35 1 5.2468 6.4326 4.4871 36 1 3.0206 5.5990 3.6006 37 1 2.6254 4.8908 5.2568 38 1 2.8703 3.0722 3.4788 39 1 2.8700 3.7261 1.8235 40 1 1.5633 1.6275 1.9346 41 1 2.9857 0.7698 2.5765 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880482221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:52 Heat of formation + Delta-G solvation = 19.288313 kcal Electronic energy + Delta-G solvation = -21093.317966 eV Core-core repulsion = 18167.906742 eV Total energy + Delta-G solvation = -2925.411224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76775 -38.81722 -36.43690 -34.58438 -33.98894 -32.64011 -31.64835 -29.42721 -27.46349 -26.06357 -24.20445 -22.97694 -22.71988 -20.71298 -20.60501 -18.92831 -18.07336 -17.32769 -16.78647 -16.52290 -15.80291 -15.69791 -15.47962 -15.27920 -15.00075 -14.56200 -14.18522 -13.78593 -13.59811 -13.33429 -13.11171 -12.78735 -12.76264 -12.50195 -12.28364 -12.20557 -12.08001 -12.04898 -11.83454 -11.60897 -11.17111 -11.16403 -10.95270 -10.72519 -10.59594 -10.29620 -9.95857 -8.61702 -7.75712 -5.94065 1.48996 1.50272 1.56046 1.87296 1.95533 2.54496 3.11526 3.29768 3.44094 3.54799 3.74986 3.89247 3.95070 4.05992 4.32697 4.43038 4.52925 4.59867 4.63121 4.71639 4.77764 4.78153 4.86005 4.88921 4.94528 4.95477 5.05452 5.14140 5.16768 5.22421 5.24136 5.32785 5.44933 5.50089 5.56674 5.74783 6.14978 6.48157 6.70979 6.74354 6.79975 6.82411 7.05488 7.67105 9.15392 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.006975 C = 0.006280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.888393 B = 4013.505720 C = 4457.635183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.216 4.216 3 C -0.034 4.034 4 C 0.148 3.852 5 O -0.565 6.565 6 C -0.093 4.093 7 C 0.065 3.935 8 N -0.502 5.502 9 C 0.121 3.879 10 C 0.038 3.962 11 C -0.495 4.495 12 H 0.039 0.961 13 C 0.053 3.947 14 N -0.876 5.876 15 Si 0.939 3.061 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.282 1.282 19 C -0.210 4.210 20 C -0.197 4.197 21 C 0.071 3.929 22 C -0.129 4.129 23 H 0.245 0.755 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.379 0.621 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.015 0.985 30 H 0.059 0.941 31 H -0.026 1.026 32 H 0.092 0.908 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.008 0.992 40 H 0.069 0.931 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -4.342 -9.744 13.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.071 4.071 4 C 0.107 3.893 5 O -0.371 6.371 6 C -0.131 4.131 7 C -0.063 4.063 8 N -0.226 5.226 9 C -0.007 4.007 10 C 0.037 3.963 11 C -0.533 4.533 12 H 0.058 0.942 13 C -0.150 4.150 14 N -0.513 5.513 15 Si 0.766 3.234 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.207 1.207 19 C -0.249 4.249 20 C -0.235 4.235 21 C -0.057 4.057 22 C -0.167 4.167 23 H 0.262 0.738 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.227 0.773 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.078 0.922 31 H -0.009 1.009 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.026 0.974 40 H 0.088 0.912 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.987 -4.700 -9.576 12.752 hybrid contribution -0.832 0.165 0.540 1.006 sum -7.819 -4.535 -9.035 12.781 Atomic orbital electron populations 1.25656 0.96715 0.99014 1.00319 1.23275 0.94960 1.02065 1.01273 1.19441 0.85500 0.98274 1.03888 1.21106 0.94241 0.85697 0.88257 1.86507 1.27041 1.55180 1.68420 1.21529 0.92146 0.97889 1.01517 1.21873 0.98985 0.96620 0.88827 1.61633 1.05372 1.39398 1.16148 1.21516 1.01518 0.86533 0.91084 1.19100 0.94351 0.88840 0.93990 1.20337 1.02443 1.11132 1.19362 0.94248 1.25279 0.95140 0.98386 0.96154 1.69931 1.10730 1.36231 1.34394 0.85945 0.76915 0.80526 0.79976 1.20405 1.21158 1.20739 1.23034 1.01063 1.01483 0.99323 1.22890 0.91450 1.07959 1.01158 1.21881 0.88771 0.95292 0.99782 1.22161 0.99728 0.98267 0.96509 0.73844 0.87806 0.88169 0.77296 0.89597 0.90057 0.96683 0.92244 1.00856 0.88989 0.93509 0.90953 0.90913 0.90757 0.90687 0.91444 0.97420 0.91194 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.83 19.25 74.32 1.43 -2.40 16 2 C -0.22 -4.90 11.12 31.13 0.35 -4.56 16 3 C -0.03 -0.79 5.00 28.79 0.14 -0.64 16 4 C 0.15 4.17 0.73 -10.71 -0.01 4.17 16 5 O -0.56 -16.24 11.81 -148.98 -1.76 -18.00 16 6 C -0.09 -2.86 5.11 30.65 0.16 -2.70 16 7 C 0.07 2.49 5.33 86.32 0.46 2.95 16 8 N -0.50 -21.98 4.13 -896.34 -3.70 -25.68 16 9 C 0.12 5.84 4.07 86.30 0.35 6.20 16 10 C 0.04 1.87 1.14 -52.93 -0.06 1.80 16 11 C -0.50 -26.65 8.16 25.60 0.21 -26.44 16 12 H 0.04 2.16 7.82 -2.91 -0.02 2.14 16 13 C 0.05 2.81 5.30 84.65 0.45 3.26 16 14 N -0.88 -47.30 10.15 21.45 0.22 -47.08 16 15 Si 0.94 43.05 29.54 68.60 2.03 45.08 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 C -0.21 -9.60 9.96 30.62 0.30 -9.30 16 20 C -0.20 -8.60 8.20 30.62 0.25 -8.35 16 21 C 0.07 2.85 4.60 86.33 0.40 3.25 16 22 C -0.13 -4.25 4.79 30.65 0.15 -4.11 16 23 H 0.25 2.76 7.80 -4.40 -0.03 2.73 16 24 H 0.10 2.07 8.14 -2.38 -0.02 2.06 16 25 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.38 8.94 8.09 -74.06 -0.60 8.34 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.02 0.59 7.76 -2.38 -0.02 0.57 16 30 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 31 H -0.03 -1.25 8.08 -2.39 -0.02 -1.27 16 32 H 0.09 4.92 5.96 -2.39 -0.01 4.91 16 33 H 0.26 13.35 8.32 -92.71 -0.77 12.58 16 34 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.07 3.03 5.27 -2.39 -0.01 3.01 16 39 H 0.01 0.31 7.76 -2.39 -0.02 0.29 16 40 H 0.07 2.09 7.34 -2.39 -0.02 2.08 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -58.98 325.30 1.76 -57.22 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.40 Total: 25.34 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 4.58 Total: -36.88 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -3.48 Total: -72.77 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.76 Total: -18.00 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -58.98 1.76 -57.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880482221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.509 kcal (2) G-P(sol) polarization free energy of solvation -58.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds