Wall clock time and date at job start Mon Mar 30 2020 00:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46496 * 110.01718 * 121.02626 * 3 2 1 5 5 C 1.34777 * 120.00271 * 58.60431 * 4 3 2 6 6 O 1.21278 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.46912 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 8 12 12 H 1.08009 * 120.00339 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00310 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99776 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00473 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47163 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47233 * 120.00015 * 15 13 11 18 18 H 1.48504 * 109.47158 * 239.99855 * 15 13 11 19 19 C 1.54264 * 110.07446 * 242.44314 * 3 2 1 20 20 C 1.54886 * 104.19769 * 95.69578 * 19 3 2 21 21 C 1.54884 * 102.74763 * 37.94586 * 20 19 3 22 22 C 1.53875 * 110.03163 * 359.63312 * 3 2 1 23 23 H 4.41739 * 5.46534 * 180.02562 * 4 1 2 24 24 H 0.97005 * 120.00266 * 238.61014 * 4 3 2 25 25 H 1.09002 * 109.47152 * 60.00245 * 7 5 4 26 26 H 1.09001 * 109.46980 * 300.00345 * 7 5 4 27 27 H 1.09001 * 109.47194 * 299.99742 * 8 7 5 28 28 H 1.08992 * 109.47399 * 59.99914 * 8 7 5 29 29 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 30 30 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 31 31 H 1.08992 * 109.47098 * 299.99158 * 10 9 8 32 32 H 1.09001 * 109.47583 * 60.00267 * 10 9 8 33 33 H 0.96998 * 120.00187 * 179.97438 * 14 13 11 34 34 H 1.09002 * 110.48642 * 214.37784 * 19 3 2 35 35 H 1.09004 * 110.48603 * 337.01486 * 19 3 2 36 36 H 1.09001 * 110.75900 * 279.62840 * 20 19 3 37 37 H 1.09001 * 110.91582 * 156.33482 * 20 19 3 38 38 H 1.09002 * 110.48702 * 203.38258 * 21 20 19 39 39 H 1.09001 * 110.49254 * 80.73241 * 21 20 19 40 40 H 1.08998 * 110.03599 * 359.95036 * 22 3 2 41 41 H 1.09003 * 110.02911 * 121.38445 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1472 0.7104 -1.1795 5 6 2.8060 1.9976 -1.3870 6 8 2.0844 2.5686 -0.5969 7 6 3.3211 2.7275 -2.6007 8 6 2.7895 4.1622 -2.5967 9 6 3.3120 4.9030 -3.8293 10 6 2.7809 6.3379 -3.8249 11 6 3.2960 7.0678 -5.0386 12 1 3.9376 6.5590 -5.7429 13 6 2.9474 8.3848 -5.2506 14 7 2.1650 9.0040 -4.3938 15 14 3.5853 9.2893 -6.7554 16 1 4.4386 8.3760 -7.5572 17 1 2.4387 9.7468 -7.5809 18 1 4.3850 10.4641 -6.3247 19 6 3.1752 0.6712 1.2845 20 6 3.4461 -0.5119 2.2468 21 6 4.0053 -1.6020 1.2991 22 6 3.1738 -1.4447 0.0093 23 1 -1.0501 0.0001 0.0003 24 1 3.7245 0.2538 -1.8114 25 1 2.9829 2.2169 -3.5024 26 1 4.4107 2.7440 -2.5795 27 1 1.6998 4.1460 -2.6178 28 1 3.1280 4.6725 -1.6951 29 1 4.4016 4.9193 -3.8086 30 1 2.9732 4.3925 -4.7308 31 1 1.6913 6.3221 -3.8454 32 1 3.1202 6.8482 -2.9235 33 1 1.9200 9.9306 -4.5427 34 1 4.0975 1.2147 1.0790 35 1 2.4229 1.3394 1.7038 36 1 2.5217 -0.8464 2.7176 37 1 4.1849 -0.2392 3.0004 38 1 3.8587 -2.5929 1.7290 39 1 5.0616 -1.4257 1.0959 40 1 2.3399 -2.1467 0.0146 41 1 3.8028 -1.6181 -0.8639 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882532859.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:06 Heat of formation + Delta-G solvation = -36.903086 kcal Electronic energy + Delta-G solvation = -19141.399705 eV Core-core repulsion = 16213.551839 eV Total energy + Delta-G solvation = -2927.847866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33380 -39.06269 -36.61564 -34.81210 -34.59985 -33.48738 -31.49679 -29.82666 -28.85077 -27.14091 -24.24502 -22.53530 -22.07251 -21.73890 -21.09125 -19.02629 -18.41503 -17.86992 -17.25774 -16.85915 -16.50262 -16.25773 -15.66530 -15.32119 -14.85984 -14.55347 -14.47117 -13.87286 -13.59438 -13.39407 -13.22050 -12.91421 -12.83868 -12.41901 -12.30554 -12.16927 -12.14729 -12.09153 -12.05206 -11.66193 -11.45525 -11.38955 -11.35131 -11.15509 -11.08782 -10.60004 -10.56470 -10.25088 -8.19366 -6.31730 1.40043 1.41189 1.52843 1.54779 1.70076 1.84077 2.40960 2.48771 3.13362 3.28978 3.55813 3.66550 3.86719 4.03223 4.14196 4.16806 4.41154 4.45801 4.52226 4.67304 4.68450 4.70567 4.81730 4.83677 4.85299 4.87365 5.02036 5.15706 5.18166 5.19711 5.23813 5.32614 5.36653 5.41639 5.54084 5.58164 5.77143 5.87340 6.24569 6.56513 6.65529 6.87011 7.31394 7.38070 8.93226 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044042 B = 0.002923 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.606470 B = 9577.560508 C = 9726.295450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.274 3.726 4 N -0.712 5.712 5 C 0.509 3.491 6 O -0.573 6.573 7 C -0.128 4.128 8 C -0.094 4.094 9 C -0.095 4.095 10 C 0.019 3.981 11 C -0.541 4.541 12 H 0.067 0.933 13 C -0.008 4.008 14 N -0.939 5.939 15 Si 0.971 3.029 16 H -0.257 1.257 17 H -0.279 1.279 18 H -0.278 1.278 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.115 4.115 22 C -0.114 4.114 23 H 0.238 0.762 24 H 0.420 0.580 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.060 0.940 31 H -0.017 1.017 32 H -0.016 1.016 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.407 -26.625 9.014 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.209 4.209 3 C 0.188 3.812 4 N -0.366 5.366 5 C 0.297 3.703 6 O -0.451 6.451 7 C -0.167 4.167 8 C -0.133 4.133 9 C -0.133 4.133 10 C -0.018 4.018 11 C -0.579 4.579 12 H 0.085 0.915 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.795 3.205 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.152 4.152 23 H 0.255 0.745 24 H 0.259 0.741 25 H 0.134 0.866 26 H 0.139 0.861 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.001 0.999 32 H 0.003 0.997 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.849 -26.080 9.588 28.207 hybrid contribution -0.427 1.114 -0.682 1.374 sum 4.422 -24.966 8.906 26.874 Atomic orbital electron populations 1.25656 0.96940 1.00530 0.98759 1.23590 0.95170 1.00462 1.01652 1.17982 0.82719 0.94197 0.86302 1.46255 1.52146 1.11532 1.26700 1.21257 0.79445 0.82196 0.87412 1.90705 1.38128 1.67935 1.48335 1.21681 1.03886 0.94958 0.96186 1.21226 0.99583 0.94492 0.97967 1.21447 1.00092 0.95062 0.96667 1.19057 0.94423 0.93148 0.95220 1.21789 1.30099 0.97155 1.08820 0.91519 1.26114 0.95336 0.98904 1.00141 1.70145 1.37428 1.11997 1.38368 0.85317 0.78234 0.78334 0.78650 1.18014 1.20487 1.20412 1.22678 1.00368 0.98370 0.94444 1.22520 1.01485 0.94441 0.97558 1.22367 0.99891 0.99421 0.93579 1.22457 1.00719 0.91012 1.01022 0.74516 0.74068 0.86620 0.86062 0.94265 0.93869 0.91910 0.92140 0.99882 0.99738 0.92848 0.90811 0.93809 0.91676 0.89875 0.89373 0.89685 0.90193 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.92 19.25 74.32 1.43 -3.49 16 2 C -0.21 -5.34 10.26 31.12 0.32 -5.02 16 3 C 0.27 5.56 0.87 2.52 0.00 5.56 16 4 N -0.71 -14.00 5.06 -427.87 -2.17 -16.17 16 5 C 0.51 14.35 7.28 87.66 0.64 14.99 16 6 O -0.57 -22.02 14.21 -3.02 -0.04 -22.07 16 7 C -0.13 -3.24 5.70 29.85 0.17 -3.07 16 8 C -0.09 -3.52 4.50 30.59 0.14 -3.38 16 9 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 10 C 0.02 1.04 4.97 29.85 0.15 1.19 16 11 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 12 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 13 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 14 N -0.94 -59.77 13.29 21.45 0.28 -59.48 16 15 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 19 C -0.12 -2.60 4.95 31.67 0.16 -2.45 16 20 C -0.12 -1.76 6.91 31.88 0.22 -1.54 16 21 C -0.12 -1.09 6.83 31.67 0.22 -0.88 16 22 C -0.11 -1.35 6.22 31.32 0.19 -1.16 16 23 H 0.24 4.14 7.80 -4.41 -0.03 4.11 16 24 H 0.42 4.82 8.07 -92.70 -0.75 4.07 16 25 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.04 1.62 8.10 -2.39 -0.02 1.60 16 28 H 0.04 1.75 8.10 -2.39 -0.02 1.74 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.07 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.04 1.24 7.69 -2.38 -0.02 1.23 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.97 7.66 -2.39 -0.02 0.95 16 41 H 0.10 0.72 7.44 -2.39 -0.02 0.70 16 Total: -1.00 -79.25 341.27 4.83 -74.42 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.24 Total: 10.64 kcal Atomic # 6 Polarization: -39.04 SS G_CDS: 4.49 Total: -34.55 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.88 Total: -75.65 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.04 Total: -22.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -79.25 4.83 -74.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882532859.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.518 kcal (2) G-P(sol) polarization free energy of solvation -79.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds