Wall clock time and date at job start Mon Mar 30 2020 00:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46791 * 167.20959 * 3 2 1 5 5 N 1.46509 * 112.85204 * 304.24950 * 4 3 2 6 6 C 1.34776 * 119.99516 * 293.90369 * 5 4 3 7 7 O 1.21278 * 120.00355 * 354.78153 * 6 5 4 8 8 C 1.50701 * 119.99398 * 174.78113 * 6 5 4 9 9 C 1.53003 * 109.46816 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47087 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47087 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46816 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00060 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99556 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00209 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99724 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47010 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46979 * 119.99877 * 16 14 12 19 19 H 1.48499 * 109.47074 * 239.99680 * 16 14 12 20 20 C 1.53781 * 113.69102 * 75.51675 * 4 3 2 21 21 C 1.53784 * 87.08018 * 139.99051 * 20 4 3 22 22 C 1.53775 * 113.61537 * 173.05550 * 4 3 2 23 23 H 4.44646 * 5.63290 * 179.97438 * 4 1 2 24 24 H 1.08991 * 109.47242 * 47.21084 * 3 2 1 25 25 H 1.08998 * 109.47090 * 287.20476 * 3 2 1 26 26 H 0.96997 * 119.99725 * 113.62201 * 5 4 3 27 27 H 1.08998 * 109.47632 * 300.00041 * 8 6 5 28 28 H 1.09004 * 109.46797 * 60.00373 * 8 6 5 29 29 H 1.08998 * 109.47276 * 300.00531 * 9 8 6 30 30 H 1.09004 * 109.46910 * 60.00715 * 9 8 6 31 31 H 1.08998 * 109.47192 * 300.00826 * 10 9 8 32 32 H 1.09010 * 109.46878 * 60.00306 * 10 9 8 33 33 H 1.08993 * 109.47153 * 300.00164 * 11 10 9 34 34 H 1.09002 * 109.46439 * 60.00592 * 11 10 9 35 35 H 0.96997 * 119.99847 * 180.02562 * 15 14 12 36 36 H 1.09001 * 113.61956 * 254.53770 * 20 4 3 37 37 H 1.08998 * 113.61602 * 25.44380 * 20 4 3 38 38 H 1.08999 * 113.61416 * 220.01720 * 21 20 4 39 39 H 1.09001 * 113.61186 * 89.11816 * 21 20 4 40 40 H 1.09006 * 113.61240 * 334.47839 * 22 4 3 41 41 H 1.08994 * 113.61816 * 105.38667 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1553 1.4076 -0.3193 5 7 2.6283 1.9304 -1.5825 6 6 2.9753 1.3507 -2.7487 7 8 3.7961 0.4580 -2.7616 8 6 2.3431 1.8118 -4.0366 9 6 2.9077 0.9970 -5.2021 10 6 2.2654 1.4647 -6.5097 11 6 2.8295 0.6495 -7.6751 12 6 2.1973 1.1106 -8.9630 13 1 1.4666 1.9059 -8.9515 14 6 2.5519 0.5173 -10.1560 15 7 3.4420 -0.4507 -10.1701 16 14 1.7688 1.0893 -11.7526 17 1 0.8063 2.1837 -11.4676 18 1 2.8244 1.5847 -12.6720 19 1 1.0526 -0.0463 -12.3874 20 6 3.0288 2.3920 0.8553 21 6 4.4068 2.9371 0.4444 22 6 4.6792 1.5578 -0.1786 23 1 -1.0502 -0.0005 -0.0001 24 1 3.0097 -0.6972 -0.7541 25 1 3.0095 -0.3031 0.9817 26 1 2.0265 2.6911 -1.5790 27 1 1.2637 1.6698 -3.9828 28 1 2.5634 2.8680 -4.1917 29 1 3.9870 1.1394 -5.2557 30 1 2.6877 -0.0593 -5.0472 31 1 1.1861 1.3221 -6.4557 32 1 2.4849 2.5211 -6.6648 33 1 3.9088 0.7918 -7.7292 34 1 2.6095 -0.4067 -7.5197 35 1 3.6916 -0.8679 -11.0094 36 1 2.2204 3.1133 0.7355 37 1 3.0242 1.9081 1.8320 38 1 5.0541 3.1699 1.2900 39 1 4.3568 3.7442 -0.2865 40 1 5.1259 0.8458 0.5155 41 1 5.2033 1.6057 -1.1331 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886797802.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:26 Heat of formation + Delta-G solvation = 7.355090 kcal Electronic energy + Delta-G solvation = -19220.911642 eV Core-core repulsion = 16294.982955 eV Total energy + Delta-G solvation = -2925.928687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72025 -38.30681 -34.83865 -33.97747 -33.17767 -32.51069 -29.82250 -29.05376 -26.06226 -25.71562 -23.65749 -22.33399 -20.40200 -19.92840 -19.37005 -18.23250 -16.86029 -16.20450 -16.01856 -15.84501 -15.19546 -14.55372 -14.36637 -14.27876 -14.05678 -13.68838 -13.25174 -12.67103 -12.57828 -12.21083 -11.85152 -11.65777 -11.56506 -11.38322 -11.21635 -10.97478 -10.73683 -10.50540 -10.46607 -10.38583 -10.36719 -10.23295 -9.64070 -9.58583 -9.18632 -9.04627 -8.93987 -8.28927 -5.93516 -3.95868 2.67525 2.74644 2.77811 3.08262 3.34332 3.41435 3.45528 4.02179 4.22108 4.43855 4.50492 4.57982 4.62511 4.92730 5.21384 5.30762 5.37722 5.38123 5.40950 5.41084 5.42816 5.57257 5.67626 5.75041 5.85970 5.91148 5.92803 6.02405 6.17503 6.33958 6.51071 6.59599 6.87387 7.05291 7.22882 7.49014 7.51967 7.76596 7.92686 8.08243 8.32497 8.50186 9.12114 9.67735 11.17866 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033940 B = 0.003110 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.781529 B = 9001.817366 C = 9289.198937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.173 4.173 3 C -0.017 4.017 4 C 0.159 3.841 5 N -0.716 5.716 6 C 0.516 3.484 7 O -0.530 6.530 8 C -0.139 4.139 9 C -0.102 4.102 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.136 4.136 21 C -0.141 4.141 22 C -0.138 4.138 23 H 0.215 0.785 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.400 0.600 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 6.501 25.156 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.173 4.173 3 C -0.054 4.054 4 C 0.072 3.928 5 N -0.369 5.369 6 C 0.304 3.696 7 O -0.405 6.405 8 C -0.179 4.179 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.174 4.174 21 C -0.178 4.178 22 C -0.176 4.176 23 H 0.231 0.769 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.235 0.765 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.636 5.723 25.014 25.712 hybrid contribution -0.991 0.589 -0.947 1.492 sum -2.627 6.312 24.067 25.019 Atomic orbital electron populations 1.24835 0.95871 1.01064 1.01728 1.22942 0.94276 1.00205 0.99893 1.19066 0.85222 0.97823 1.03317 1.21145 0.94748 0.92205 0.84689 1.45768 1.50886 1.35423 1.04857 1.21045 0.81592 0.81847 0.85092 1.90681 1.32599 1.30193 1.87043 1.21799 1.01496 1.02231 0.92388 1.21436 1.00590 0.99236 0.92723 1.21652 0.99044 0.99880 0.94222 1.19099 0.96266 0.95101 0.91283 1.21329 1.23565 1.18848 0.92017 0.92717 1.25045 0.95259 0.95132 0.99172 1.69986 1.32257 1.24862 1.26367 0.86561 0.79206 0.78584 0.83785 1.19778 1.21054 1.21063 1.23238 0.98232 0.98215 0.97673 1.22846 0.96745 0.97459 1.00752 1.23233 0.95035 0.96994 1.02326 0.76856 0.88167 0.88819 0.76535 0.89248 0.89305 0.91813 0.91865 0.93538 0.93518 0.96590 0.96599 0.93115 0.90999 0.88783 0.91112 0.90075 0.89239 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.19 19.25 29.55 0.57 -1.63 16 2 C -0.17 -1.92 12.83 -37.12 -0.48 -2.39 16 3 C -0.02 -0.17 5.01 -29.52 -0.15 -0.32 16 4 C 0.16 1.50 0.54 -131.01 -0.07 1.43 16 5 N -0.72 -7.38 4.72 -46.85 -0.22 -7.60 16 6 C 0.52 7.15 7.39 -10.99 -0.08 7.07 16 7 O -0.53 -9.24 13.87 5.56 0.08 -9.16 16 8 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 9 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 16 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C -0.14 -0.94 7.24 -25.92 -0.19 -1.13 16 21 C -0.14 -1.02 7.99 -25.92 -0.21 -1.23 16 22 C -0.14 -1.28 6.95 -25.92 -0.18 -1.46 16 23 H 0.21 1.48 7.80 -54.08 -0.42 1.06 16 24 H 0.10 1.27 7.18 -51.93 -0.37 0.89 16 25 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.40 3.17 8.67 -40.82 -0.35 2.82 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.81 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.08 0.99 7.17 -51.93 -0.37 0.61 16 LS Contribution 345.41 15.07 5.21 5.21 Total: -1.00 -33.87 345.41 -7.94 -41.81 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.97 Total: -0.60 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -1.75 Total: -19.69 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.52 Total: -34.61 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.87 -7.94 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886797802.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.164 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds