Wall clock time and date at job start Mon Mar 30 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.51263 * 120.85362 * 2 1 4 4 C 1.53229 * 108.53591 * 231.32445 * 3 2 1 5 5 C 1.52955 * 109.40625 * 305.36896 * 4 3 2 6 6 C 1.50694 * 109.41470 * 183.70189 * 5 4 3 7 7 O 1.21282 * 120.00293 * 324.58470 * 6 5 4 8 8 N 1.34775 * 119.99818 * 144.57742 * 6 5 4 9 9 C 1.46500 * 120.00084 * 185.21098 * 8 6 5 10 10 C 1.53004 * 109.47559 * 183.38176 * 9 8 6 11 11 C 1.50705 * 115.54724 * 294.03302 * 10 9 8 12 12 H 1.08001 * 119.99965 * 93.88964 * 11 10 9 13 13 C 1.37874 * 119.99737 * 273.88617 * 11 10 9 14 14 N 1.31515 * 120.00354 * 7.54233 * 13 11 10 15 15 Si 1.86800 * 119.99997 * 187.53765 * 13 11 10 16 16 H 1.48499 * 109.47369 * 59.99966 * 15 13 11 17 17 H 1.48499 * 109.47218 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46993 * 300.00016 * 15 13 11 19 19 C 1.52995 * 117.50158 * 148.36049 * 10 9 8 20 20 C 1.53001 * 117.49757 * 79.69754 * 10 9 8 21 21 C 1.52963 * 109.75772 * 63.63406 * 5 4 3 22 22 C 1.51272 * 120.84701 * 179.97438 * 2 1 3 23 23 H 1.07998 * 119.99394 * 0.02562 * 1 2 3 24 24 H 1.07994 * 120.00464 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.62666 * 111.60873 * 3 2 1 26 26 H 1.08997 * 109.62359 * 351.04070 * 3 2 1 27 27 H 1.09006 * 109.47682 * 185.39474 * 4 3 2 28 28 H 1.08995 * 109.48359 * 65.35745 * 4 3 2 29 29 H 1.08999 * 109.41401 * 303.56697 * 5 4 3 30 30 H 0.97003 * 120.00303 * 5.20922 * 8 6 5 31 31 H 1.08998 * 109.47574 * 303.38186 * 9 8 6 32 32 H 1.09009 * 109.47100 * 63.38238 * 9 8 6 33 33 H 0.97000 * 120.00245 * 185.02086 * 14 13 11 34 34 H 1.09006 * 117.49966 * 359.97438 * 19 10 9 35 35 H 1.09002 * 117.49875 * 145.02542 * 19 10 9 36 36 H 1.09004 * 117.49547 * 214.98434 * 20 10 9 37 37 H 1.09001 * 117.49584 * 359.97438 * 20 10 9 38 38 H 1.09008 * 109.47852 * 56.34355 * 21 5 4 39 39 H 1.08992 * 109.48353 * 176.38458 * 21 5 4 40 40 H 1.08993 * 109.62651 * 248.39137 * 22 2 1 41 41 H 1.09000 * 109.62554 * 8.76883 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0858 1.2986 0.0000 4 6 3.1150 1.2511 -1.1342 5 6 3.9812 -0.0004 -0.9825 6 6 5.0511 -0.0007 -2.0436 7 8 4.8101 0.4389 -3.1480 8 7 6.2760 -0.4894 -1.7654 9 6 7.3486 -0.3862 -2.7579 10 6 8.6018 -1.0870 -2.2294 11 6 9.2411 -0.4518 -1.0215 12 1 8.9846 -0.7966 -0.0306 13 6 10.1536 0.5694 -1.1814 14 7 10.3561 1.0898 -2.3721 15 14 11.1020 1.2139 0.2932 16 1 11.8983 0.1116 0.8899 17 1 12.0124 2.3036 -0.1416 18 1 10.1489 1.7393 1.3036 19 6 9.5271 -1.7471 -3.2535 20 6 8.6571 -2.6122 -2.3380 21 6 3.1138 -1.2511 -1.1347 22 6 2.0857 -1.2987 0.0006 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9352 -0.0004 25 1 2.5982 1.4190 0.9545 26 1 1.4029 2.1329 -0.1599 27 1 3.7469 2.1382 -1.0889 28 1 2.5980 1.2215 -2.0933 29 1 4.4478 -0.0008 0.0026 30 1 6.4473 -0.9094 -0.9080 31 1 7.0314 -0.8606 -3.6865 32 1 7.5713 0.6645 -2.9443 33 1 11.0489 1.7569 -2.4984 34 1 9.2429 -1.6825 -4.3038 35 1 10.5983 -1.7224 -3.0534 36 1 9.1563 -3.1561 -1.5361 37 1 7.8005 -3.1162 -2.7857 38 1 2.5967 -1.2203 -2.0939 39 1 3.7448 -2.1387 -1.0900 40 1 2.5980 -1.4188 0.9551 41 1 1.4023 -2.1334 -0.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890357422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:22 Heat of formation + Delta-G solvation = -40.309586 kcal Electronic energy + Delta-G solvation = -19945.549354 eV Core-core repulsion = 17017.553771 eV Total energy + Delta-G solvation = -2927.995583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10335 -39.02329 -38.22614 -34.94664 -33.98372 -33.67097 -32.00940 -28.75336 -27.58929 -26.51095 -23.91514 -23.06054 -22.63512 -21.35025 -20.75385 -19.24713 -18.42160 -17.74944 -16.72663 -16.64328 -16.14889 -15.70541 -15.62747 -15.43965 -14.94746 -14.53879 -14.35581 -14.32271 -13.65714 -13.55231 -13.36413 -13.25449 -12.99675 -12.76230 -12.51846 -12.37398 -12.34600 -12.05101 -11.94926 -11.57424 -11.51289 -11.09737 -10.82835 -10.74953 -10.44432 -10.04674 -9.84721 -9.82563 -8.10906 -6.23745 1.42131 1.44530 1.45723 1.52471 1.72321 2.38673 2.45308 3.18527 3.48018 3.68076 3.73664 3.89305 4.10670 4.22297 4.24255 4.36814 4.42393 4.50076 4.54650 4.63526 4.64349 4.72426 4.80804 4.85844 4.98314 5.01706 5.04790 5.07431 5.16547 5.19859 5.22469 5.25877 5.35404 5.56911 5.59669 5.68738 5.77649 5.81561 6.04447 6.36043 6.78465 6.85136 7.39836 7.46652 8.97450 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023839 B = 0.004691 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.263763 B = 5967.455169 C = 6440.351930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.079 4.079 4 C -0.096 4.096 5 C -0.096 4.096 6 C 0.505 3.495 7 O -0.600 6.600 8 N -0.699 5.699 9 C 0.178 3.822 10 C 0.006 3.994 11 C -0.504 4.504 12 H 0.065 0.935 13 C 0.025 3.975 14 N -0.908 5.908 15 Si 0.948 3.052 16 H -0.270 1.270 17 H -0.293 1.293 18 H -0.270 1.270 19 C -0.161 4.161 20 C -0.175 4.175 21 C -0.099 4.099 22 C -0.078 4.078 23 H 0.102 0.898 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.410 0.590 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.258 0.742 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 -4.549 7.629 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.134 4.134 3 C -0.116 4.116 4 C -0.135 4.135 5 C -0.117 4.117 6 C 0.292 3.708 7 O -0.482 6.482 8 N -0.348 5.348 9 C 0.053 3.947 10 C 0.005 3.995 11 C -0.542 4.542 12 H 0.083 0.917 13 C -0.176 4.176 14 N -0.545 5.545 15 Si 0.774 3.226 16 H -0.195 1.195 17 H -0.219 1.219 18 H -0.195 1.195 19 C -0.199 4.199 20 C -0.212 4.212 21 C -0.137 4.137 22 C -0.115 4.115 23 H 0.120 0.880 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.246 0.754 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.668 -4.042 6.768 17.539 hybrid contribution 1.207 0.586 0.372 1.392 sum -14.461 -3.457 7.140 16.494 Atomic orbital electron populations 1.23784 0.94757 1.02604 1.02133 1.22082 0.95518 0.95905 0.99861 1.20802 0.96981 0.95527 0.98336 1.21346 0.96926 0.95702 0.99485 1.21311 0.94061 0.98616 0.97707 1.21406 0.83697 0.76355 0.89308 1.90617 1.82059 1.49457 1.26105 1.45958 1.09609 1.59157 1.20049 1.20564 0.86241 0.98602 0.89281 1.19058 0.93357 0.90168 0.96910 1.20652 1.24697 1.17054 0.91795 0.91655 1.25694 0.98070 0.95858 0.97929 1.70143 1.32021 1.28371 1.23992 0.85771 0.78777 0.77835 0.80185 1.19460 1.21877 1.19498 1.22433 0.96668 1.06171 0.94632 1.23003 1.01681 0.94236 1.02266 1.21441 0.97058 0.95541 0.99620 1.20808 0.97045 0.95094 0.98559 0.87952 0.87455 0.89713 0.90249 0.92653 0.92591 0.87324 0.75377 0.94986 0.95483 0.93254 0.91338 0.91705 0.89357 0.89455 0.92657 0.90462 0.89344 0.89648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 13.99 67.77 0.95 -2.14 16 2 C -0.13 -2.40 5.35 -16.13 -0.09 -2.48 16 3 C -0.08 -1.51 6.03 30.10 0.18 -1.33 16 4 C -0.10 -2.50 4.81 30.66 0.15 -2.35 16 5 C -0.10 -2.53 2.41 -11.57 -0.03 -2.56 16 6 C 0.50 18.76 6.81 87.66 0.60 19.36 16 7 O -0.60 -27.56 16.35 -3.04 -0.05 -27.61 16 8 N -0.70 -26.85 5.48 -463.05 -2.54 -29.39 16 9 C 0.18 8.26 5.51 86.38 0.48 8.73 16 10 C 0.01 0.27 1.38 -52.93 -0.07 0.20 16 11 C -0.50 -25.46 8.65 25.60 0.22 -25.23 16 12 H 0.07 3.15 7.83 -2.91 -0.02 3.13 16 13 C 0.03 1.33 5.38 84.65 0.46 1.78 16 14 N -0.91 -51.33 12.92 21.45 0.28 -51.06 16 15 Si 0.95 41.68 29.55 68.60 2.03 43.71 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 C -0.16 -7.33 9.40 30.62 0.29 -7.04 16 20 C -0.17 -6.89 9.96 30.62 0.30 -6.58 16 21 C -0.10 -2.17 5.19 30.66 0.16 -2.01 16 22 C -0.08 -1.30 6.04 30.11 0.18 -1.12 16 23 H 0.10 1.46 7.92 -2.91 -0.02 1.43 16 24 H 0.11 1.43 7.92 -2.91 -0.02 1.40 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.37 7.89 -2.39 -0.02 1.35 16 27 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.64 7.97 -2.39 -0.02 1.62 16 29 H 0.11 2.44 8.13 -2.39 -0.02 2.42 16 30 H 0.41 13.87 8.37 -92.71 -0.78 13.10 16 31 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 32 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 34 H 0.07 3.02 8.14 -2.38 -0.02 3.00 16 35 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.20 7.89 -2.39 -0.02 1.18 16 Total: -1.00 -63.09 338.25 3.70 -59.39 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.22 Total: 27.74 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 3.77 Total: -22.78 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.26 Total: -80.44 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -63.09 3.70 -59.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.076 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds