Wall clock time and date at job start Mon Mar 30 2020 00:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00083 * 2 1 4 4 C 1.38757 * 120.05426 * 0.29963 * 3 2 1 5 5 C 1.38119 * 119.94413 * 180.21111 * 4 3 2 6 6 C 1.38288 * 120.05366 * 359.50981 * 5 4 3 7 7 C 1.50704 * 119.94343 * 180.25711 * 6 5 4 8 8 N 1.46900 * 109.47317 * 260.00087 * 7 6 5 9 9 C 1.46903 * 110.99822 * 66.04632 * 8 7 6 10 10 C 1.46899 * 111.00404 * 190.00115 * 8 7 6 11 11 H 1.09000 * 109.47139 * 54.99605 * 10 8 7 12 12 C 1.53000 * 109.46950 * 295.00214 * 10 8 7 13 13 C 1.50700 * 109.47188 * 175.00192 * 10 8 7 14 14 H 1.07995 * 120.00146 * 0.02562 * 13 10 8 15 15 C 1.37876 * 119.99657 * 179.97438 * 13 10 8 16 16 N 1.31516 * 120.00153 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 119.99839 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47192 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46831 * 120.00051 * 17 15 13 20 20 H 1.48500 * 109.47287 * 240.00003 * 17 15 13 21 21 C 1.38240 * 120.11591 * 0.24016 * 6 5 4 22 22 C 1.50696 * 119.97662 * 180.02562 * 21 6 5 23 23 C 1.38171 * 120.05202 * 359.97438 * 21 6 5 24 24 H 1.09000 * 109.47190 * 299.99904 * 1 2 3 25 25 H 1.09000 * 109.47473 * 60.00460 * 1 2 3 26 26 H 1.09007 * 109.46894 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.02597 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.97592 * 179.79533 * 5 4 3 29 29 H 1.08993 * 109.47266 * 20.00163 * 7 6 5 30 30 H 1.09001 * 109.47240 * 140.00495 * 7 6 5 31 31 H 1.08999 * 109.47335 * 60.00089 * 9 8 7 32 32 H 1.08998 * 109.47085 * 179.97438 * 9 8 7 33 33 H 1.09000 * 109.47070 * 299.99884 * 9 8 7 34 34 H 1.09005 * 109.47309 * 300.00328 * 12 10 8 35 35 H 1.09008 * 109.46966 * 59.99468 * 12 10 8 36 36 H 1.09000 * 109.47385 * 180.02562 * 12 10 8 37 37 H 0.96997 * 119.99618 * 180.02562 * 16 15 13 38 38 H 1.09000 * 109.47471 * 89.99834 * 22 21 6 39 39 H 1.09005 * 109.47005 * 209.99445 * 22 21 6 40 40 H 1.08997 * 109.46936 * 329.99322 * 22 21 6 41 41 H 1.07997 * 120.02798 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 3.3018 3.6757 0.0014 7 6 3.9860 5.0185 0.0024 8 7 4.4221 5.3470 -1.3613 9 6 3.2688 5.5430 -2.2499 10 6 5.2960 6.5278 -1.3647 11 1 6.1317 6.3632 -0.6845 12 6 4.5004 7.7523 -0.9079 13 6 5.8205 6.7606 -2.7581 14 1 5.5331 6.0980 -3.5610 15 6 6.6665 7.8202 -3.0081 16 7 7.0161 8.6275 -2.0304 17 14 7.3172 8.1085 -4.7352 18 1 6.7789 7.0675 -5.6472 19 1 6.8892 9.4496 -5.2080 20 1 8.8005 8.0379 -4.7235 21 6 4.0560 2.5171 0.0004 22 6 5.5607 2.5982 0.0005 23 6 3.4311 1.2848 0.0003 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2128 2.3203 0.0108 28 1 1.3339 4.5114 0.0034 29 1 3.2907 5.7803 0.3549 30 1 4.8527 4.9842 0.6626 31 1 2.6546 6.3607 -1.8730 32 1 3.6200 5.7855 -3.2529 33 1 2.6762 4.6288 -2.2831 34 1 3.6645 7.9169 -1.5880 35 1 4.1209 7.5838 0.1000 36 1 5.1486 8.6286 -0.9108 37 1 7.6109 9.3731 -2.2064 38 1 5.9236 2.6168 1.0282 39 1 5.9714 1.7294 -0.5140 40 1 5.8757 3.5068 -0.5126 41 1 4.0206 0.3799 0.0000 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891934146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:48 Heat of formation + Delta-G solvation = -26.422557 kcal Electronic energy + Delta-G solvation = -20144.564598 eV Core-core repulsion = 17217.171202 eV Total energy + Delta-G solvation = -2927.393396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19747 -39.48821 -37.98331 -34.77144 -33.42288 -32.27965 -30.25042 -28.90999 -27.57699 -27.37273 -27.09763 -24.88920 -23.04882 -21.75737 -20.69967 -18.59570 -18.21424 -17.36472 -17.10580 -16.59676 -16.28588 -16.07823 -15.42697 -15.13113 -14.79813 -14.46758 -14.41009 -14.11524 -14.00865 -13.50758 -13.08454 -13.02317 -12.91301 -12.78381 -12.68456 -12.60513 -12.44641 -12.31989 -12.15827 -11.98515 -11.68885 -11.59981 -11.52987 -10.86369 -10.47134 -9.65866 -9.03401 -8.74634 -8.08103 -6.18262 0.44416 0.49848 1.42247 1.44803 1.56065 2.41965 2.44891 2.77818 3.21287 3.59577 3.89246 3.95256 4.09155 4.25340 4.41615 4.43027 4.44921 4.52291 4.60726 4.69273 4.70815 4.75849 4.82860 4.88656 4.89365 4.93248 4.98085 5.11676 5.18451 5.21458 5.30708 5.43614 5.50661 5.59631 5.74214 5.81994 5.87106 5.89173 6.23078 6.50965 6.53065 6.78075 6.96052 7.50937 8.97981 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.004329 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.330607 B = 6466.338585 C = 6538.879103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.119 4.119 7 C 0.100 3.900 8 N -0.532 5.532 9 C 0.044 3.956 10 C 0.215 3.785 11 H 0.009 0.991 12 C -0.159 4.159 13 C -0.511 4.511 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.956 3.044 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.031 4.031 22 C -0.118 4.118 23 C -0.167 4.167 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.130 0.870 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.017 0.983 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.260 0.740 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.319 -13.671 5.200 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.095 4.095 6 C -0.119 4.119 7 C -0.027 4.027 8 N -0.255 5.255 9 C -0.104 4.104 10 C 0.108 3.892 11 H 0.027 0.973 12 C -0.218 4.218 13 C -0.549 4.549 14 H 0.074 0.926 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.032 4.032 22 C -0.175 4.175 23 C -0.186 4.186 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.137 0.863 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.051 0.949 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.853 -14.109 5.047 19.106 hybrid contribution -0.107 1.423 -0.483 1.507 sum -11.960 -12.686 4.563 18.022 Atomic orbital electron populations 1.23322 0.76607 1.05465 1.02146 1.86027 1.23360 1.26701 1.88839 1.19080 0.92319 0.84657 0.96739 1.21325 1.00859 0.91503 1.09467 1.20980 0.93503 0.97836 0.97177 1.19673 0.93695 0.94418 1.04147 1.20871 0.97948 0.92580 0.91308 1.62238 1.17636 1.38258 1.07402 1.22133 0.92084 0.98781 0.97427 1.19077 0.90070 0.84408 0.95610 0.97292 1.22209 0.99581 1.03254 0.96756 1.21404 1.27527 1.11018 0.94956 0.92630 1.25643 0.96620 0.95847 1.00488 1.70016 1.36064 1.17142 1.32866 0.85535 0.77969 0.77773 0.80504 1.19375 1.20801 1.20773 1.19663 0.96629 0.91496 0.95398 1.20861 0.90435 1.03601 1.02578 1.20400 0.91866 0.98030 1.08257 0.91732 0.92046 0.86250 0.83310 0.85179 0.94947 0.91437 0.96451 0.92792 0.92010 0.95063 0.95587 0.92062 0.93062 0.90356 0.90767 0.91391 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.75 10.50 -92.38 -0.97 -8.72 16 3 C 0.12 3.07 6.69 22.51 0.15 3.22 16 4 C -0.21 -5.15 9.04 22.37 0.20 -4.95 16 5 C -0.08 -2.10 8.72 22.25 0.19 -1.90 16 6 C -0.12 -3.77 4.58 -19.85 -0.09 -3.86 16 7 C 0.10 3.65 3.66 85.56 0.31 3.96 16 8 N -0.53 -22.57 4.07 -906.04 -3.69 -26.26 16 9 C 0.04 1.74 8.51 127.69 1.09 2.82 16 10 C 0.22 10.83 2.34 44.17 0.10 10.93 16 11 H 0.01 0.51 8.03 -2.39 -0.02 0.49 16 12 C -0.16 -7.66 8.28 71.98 0.60 -7.07 16 13 C -0.51 -27.96 7.89 25.60 0.20 -27.76 16 14 H 0.06 3.07 6.77 -2.91 -0.02 3.05 16 15 C 0.01 0.68 5.30 84.65 0.45 1.13 16 16 N -0.92 -52.75 11.32 21.45 0.24 -52.51 16 17 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 C -0.03 -0.96 5.88 -19.88 -0.12 -1.07 16 22 C -0.12 -3.50 9.26 71.23 0.66 -2.84 16 23 C -0.17 -4.67 9.64 22.37 0.22 -4.46 16 24 H 0.06 0.75 7.65 -2.39 -0.02 0.74 16 25 H 0.06 0.77 7.68 -2.39 -0.02 0.75 16 26 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.15 2.68 6.30 -2.91 -0.02 2.66 16 28 H 0.13 3.22 8.03 -2.91 -0.02 3.20 16 29 H 0.03 1.16 6.79 -2.39 -0.02 1.14 16 30 H 0.07 2.51 7.13 -2.39 -0.02 2.49 16 31 H 0.02 0.66 6.51 -2.39 -0.02 0.64 16 32 H 0.05 2.31 6.41 -2.39 -0.02 2.30 16 33 H 0.06 2.18 6.65 -2.39 -0.02 2.17 16 34 H 0.03 1.45 6.47 -2.38 -0.02 1.44 16 35 H 0.03 1.11 6.75 -2.38 -0.02 1.09 16 36 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 37 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 1.95 8.09 -2.38 -0.02 1.93 16 40 H 0.07 2.44 6.34 -2.39 -0.02 2.42 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -61.49 320.64 3.70 -57.80 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 1.01 Total: 14.30 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 5.08 Total: -30.48 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -3.44 Total: -78.76 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.97 Total: -8.72 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -61.49 3.70 -57.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.373 kcal (2) G-P(sol) polarization free energy of solvation -61.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds