Wall clock time and date at job start Mon Mar 30 2020 00:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35895 * 117.00356 * 2 1 4 4 C 1.38759 * 120.05781 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94362 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.06079 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94751 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.46929 * 105.38740 * 7 6 5 9 9 C 1.46902 * 111.00196 * 288.21063 * 8 7 6 10 10 C 1.46904 * 111.00184 * 164.25991 * 8 7 6 11 11 H 1.09005 * 109.46565 * 309.99674 * 10 8 7 12 12 C 1.53002 * 109.47317 * 69.99883 * 10 8 7 13 13 C 1.50702 * 109.47417 * 190.00359 * 10 8 7 14 14 H 1.08004 * 119.99783 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99811 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00665 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99839 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47272 * 89.99630 * 17 15 13 19 19 H 1.48501 * 109.47089 * 209.99868 * 17 15 13 20 20 H 1.48504 * 109.46951 * 329.99563 * 17 15 13 21 21 C 1.38246 * 120.11036 * 0.04800 * 6 5 4 22 22 C 1.50699 * 119.97243 * 179.97438 * 21 6 5 23 23 C 1.38167 * 120.05597 * 359.67580 * 21 6 5 24 24 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46461 * 299.99530 * 1 2 3 26 26 H 1.08999 * 109.47330 * 59.99430 * 1 2 3 27 27 H 1.07995 * 120.02306 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.96924 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47345 * 225.39174 * 7 6 5 30 30 H 1.09001 * 109.46889 * 345.39003 * 7 6 5 31 31 H 1.09002 * 109.46618 * 66.61693 * 9 8 7 32 32 H 1.08995 * 109.47013 * 186.61185 * 9 8 7 33 33 H 1.08993 * 109.47050 * 306.61396 * 9 8 7 34 34 H 1.09001 * 109.46830 * 300.00155 * 12 10 8 35 35 H 1.09001 * 109.46801 * 60.00138 * 12 10 8 36 36 H 1.08993 * 109.46988 * 180.02562 * 12 10 8 37 37 H 0.96993 * 120.00822 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47138 * 84.62516 * 22 21 6 39 39 H 1.09003 * 109.47225 * 204.62999 * 22 21 6 40 40 H 1.08999 * 109.46891 * 324.62323 * 22 21 6 41 41 H 1.07997 * 120.02830 * 180.30018 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.5356 5.2868 1.3385 9 6 3.4635 5.5758 2.3003 10 6 5.5133 6.3824 1.2953 11 1 6.2357 6.1934 0.5011 12 6 4.7888 7.7021 1.0224 13 6 6.2313 6.4674 2.6175 14 1 5.9855 5.7770 3.4108 15 6 7.2011 7.4274 2.8148 16 7 7.5000 8.2685 1.8490 17 14 8.0906 7.5333 4.4541 18 1 9.3008 6.6736 4.4170 19 1 8.4905 8.9403 4.7102 20 1 7.1874 7.0702 5.5381 21 6 4.0561 2.5169 0.0006 22 6 5.5609 2.5979 0.0006 23 6 3.4312 1.2847 0.0058 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2129 2.3204 0.0014 28 1 1.3342 4.5114 0.0011 29 1 4.7946 5.0149 -0.7286 30 1 3.2653 5.7938 -0.2562 31 1 2.8609 4.6803 2.4525 32 1 3.9007 5.8851 3.2496 33 1 2.8334 6.3761 1.9125 34 1 4.2696 7.6405 0.0660 35 1 4.0665 7.8909 1.8166 36 1 5.5143 8.5148 0.9899 37 1 8.1825 8.9436 1.9876 38 1 5.9185 2.7127 1.0238 39 1 5.9739 1.6850 -0.4285 40 1 5.8786 3.4547 -0.5937 41 1 4.0206 0.3798 0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891934155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:51 Heat of formation + Delta-G solvation = -11.204102 kcal Electronic energy + Delta-G solvation = -20146.619961 eV Core-core repulsion = 17219.886486 eV Total energy + Delta-G solvation = -2926.733474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.08892 -38.17461 -36.50022 -32.85795 -32.24865 -30.90055 -28.64313 -27.69634 -26.34034 -26.03114 -25.17779 -23.31993 -21.84779 -20.41046 -19.07415 -17.59322 -16.32147 -16.17609 -15.74106 -15.30217 -14.88843 -14.33930 -14.11615 -13.82805 -13.34243 -13.12494 -12.97649 -12.92912 -12.39332 -12.02818 -11.92715 -11.71923 -11.59563 -11.14179 -11.11719 -10.87259 -10.77859 -10.72813 -10.57465 -10.52277 -10.35182 -10.02378 -9.75308 -8.88607 -8.51533 -8.36276 -7.84307 -7.10968 -5.99079 -4.02408 1.58199 1.67067 3.30790 3.32559 3.38974 3.42584 3.95949 4.44127 4.86642 5.02041 5.03699 5.07490 5.20039 5.30414 5.32995 5.37669 5.51339 5.63264 5.68701 5.98440 6.03807 6.10491 6.23473 6.27671 6.38229 6.43406 6.46314 6.58675 6.68519 6.71432 6.85501 6.91743 7.01650 7.07061 7.15463 7.49016 7.52422 7.73139 7.86977 8.16082 8.41509 8.62474 9.04099 9.62662 11.07936 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033824 B = 0.004394 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.611008 B = 6370.302695 C = 6550.564024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.117 3.883 4 C -0.218 4.218 5 C -0.075 4.075 6 C -0.099 4.099 7 C 0.094 3.906 8 N -0.525 5.525 9 C 0.038 3.962 10 C 0.211 3.789 11 H 0.038 0.962 12 C -0.172 4.172 13 C -0.496 4.496 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.275 1.275 21 C -0.018 4.018 22 C -0.109 4.109 23 C -0.157 4.157 24 H 0.095 0.905 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.012 0.988 34 H 0.005 0.995 35 H 0.030 0.970 36 H 0.087 0.913 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.072 0.928 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -11.454 -4.889 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.072 3.928 4 C -0.237 4.237 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.034 4.034 8 N -0.249 5.249 9 C -0.111 4.111 10 C 0.104 3.896 11 H 0.056 0.944 12 C -0.231 4.231 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.200 1.200 21 C -0.019 4.019 22 C -0.165 4.165 23 C -0.176 4.176 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.094 0.906 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.030 0.970 34 H 0.024 0.976 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.161 -11.903 -4.759 16.997 hybrid contribution -0.356 1.082 0.618 1.296 sum -11.517 -10.820 -4.142 16.337 Atomic orbital electron populations 1.22974 0.78965 1.03396 1.01205 1.86030 1.20929 1.27434 1.89219 1.18937 0.92277 0.83776 0.97794 1.21053 0.99377 0.92408 1.10831 1.20813 0.94121 0.96662 0.97796 1.19801 0.92783 0.95558 1.01845 1.20955 0.97450 0.91328 0.93681 1.62308 1.14037 1.44452 1.04063 1.22205 0.93504 0.97548 0.97854 1.19345 0.88672 0.83762 0.97776 0.94393 1.22412 1.00329 1.04391 0.95957 1.21106 1.18904 1.14881 0.98569 0.91970 1.24915 0.96948 0.95649 0.96766 1.69880 1.32278 1.19278 1.32080 0.86545 0.80026 0.76989 0.84102 1.20709 1.21451 1.19988 1.19590 0.96542 0.91098 0.94672 1.20784 0.90133 1.01632 1.03985 1.20256 0.91057 0.98080 1.08204 0.88664 0.92856 0.92919 0.86163 0.86365 0.90618 0.95161 0.93988 0.90818 0.96958 0.97579 0.95111 0.89420 0.93063 0.89469 0.92760 0.90928 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.19 10.50 -19.41 -0.20 -4.40 16 3 C 0.12 1.68 6.69 -39.21 -0.26 1.41 16 4 C -0.22 -2.95 9.04 -39.43 -0.36 -3.31 16 5 C -0.08 -1.11 9.46 -39.61 -0.37 -1.48 16 6 C -0.10 -1.63 4.68 -104.60 -0.49 -2.12 16 7 C 0.09 1.70 3.85 -4.98 -0.02 1.69 16 8 N -0.53 -11.01 4.51 -237.73 -1.07 -12.08 16 9 C 0.04 0.75 8.32 60.07 0.50 1.24 16 10 C 0.21 5.16 2.30 -68.86 -0.16 5.00 16 11 H 0.04 1.02 7.86 -51.93 -0.41 0.61 16 12 C -0.17 -4.10 8.25 37.16 0.31 -3.79 16 13 C -0.50 -13.33 7.82 -34.44 -0.27 -13.60 16 14 H 0.06 1.69 7.19 -52.48 -0.38 1.31 16 15 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 16 N -0.90 -25.22 11.32 55.43 0.63 -24.60 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.02 -0.29 5.88 -104.65 -0.62 -0.91 16 22 C -0.11 -1.67 9.39 36.01 0.34 -1.33 16 23 C -0.16 -2.35 9.62 -39.43 -0.38 -2.73 16 24 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 27 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 28 H 0.12 1.58 8.00 -52.48 -0.42 1.16 16 29 H 0.08 1.38 6.40 -51.93 -0.33 1.05 16 30 H 0.03 0.54 6.98 -51.93 -0.36 0.18 16 31 H 0.04 0.77 7.50 -51.93 -0.39 0.38 16 32 H 0.07 1.58 6.64 -51.93 -0.34 1.24 16 33 H 0.01 0.23 6.72 -51.93 -0.35 -0.12 16 34 H 0.01 0.12 7.06 -51.93 -0.37 -0.25 16 35 H 0.03 0.71 6.57 -51.93 -0.34 0.37 16 36 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 40 H 0.07 1.15 6.46 -51.93 -0.34 0.82 16 41 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 323.34 15.07 4.87 4.87 Total: -1.00 -28.70 323.34 -7.97 -36.67 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.29 Total: 0.50 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -0.88 Total: -17.19 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: -0.44 Total: -36.67 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.20 Total: -4.40 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.70 -7.97 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.461 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds