Wall clock time and date at job start Mon Mar 30 2020 00:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35895 * 117.00356 * 2 1 4 4 C 1.38759 * 120.05781 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94362 * 179.97438 * 4 3 2 6 6 C 1.38280 * 120.06079 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94751 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.46929 * 105.38740 * 7 6 5 9 9 C 1.46902 * 111.00196 * 288.21063 * 8 7 6 10 10 C 1.46904 * 111.00184 * 164.25991 * 8 7 6 11 11 H 1.09005 * 109.46565 * 309.99674 * 10 8 7 12 12 C 1.53002 * 109.47317 * 69.99883 * 10 8 7 13 13 C 1.50702 * 109.47417 * 190.00359 * 10 8 7 14 14 H 1.08004 * 119.99783 * 359.97438 * 13 10 8 15 15 C 1.37872 * 119.99811 * 180.02562 * 13 10 8 16 16 N 1.31514 * 120.00665 * 359.97438 * 15 13 10 17 17 Si 1.86806 * 119.99839 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47272 * 89.99630 * 17 15 13 19 19 H 1.48501 * 109.47089 * 209.99868 * 17 15 13 20 20 H 1.48504 * 109.46951 * 329.99563 * 17 15 13 21 21 C 1.38246 * 120.11036 * 0.04800 * 6 5 4 22 22 C 1.50699 * 119.97243 * 179.97438 * 21 6 5 23 23 C 1.38167 * 120.05597 * 359.67580 * 21 6 5 24 24 H 1.09000 * 109.47356 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46461 * 299.99530 * 1 2 3 26 26 H 1.08999 * 109.47330 * 59.99430 * 1 2 3 27 27 H 1.07995 * 120.02306 * 0.02562 * 4 3 2 28 28 H 1.08007 * 119.96924 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47345 * 225.39174 * 7 6 5 30 30 H 1.09001 * 109.46889 * 345.39003 * 7 6 5 31 31 H 1.09002 * 109.46618 * 66.61693 * 9 8 7 32 32 H 1.08995 * 109.47013 * 186.61185 * 9 8 7 33 33 H 1.08993 * 109.47050 * 306.61396 * 9 8 7 34 34 H 1.09001 * 109.46830 * 300.00155 * 12 10 8 35 35 H 1.09001 * 109.46801 * 60.00138 * 12 10 8 36 36 H 1.08993 * 109.46988 * 180.02562 * 12 10 8 37 37 H 0.96993 * 120.00822 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47138 * 84.62516 * 22 21 6 39 39 H 1.09003 * 109.47225 * 204.62999 * 22 21 6 40 40 H 1.08999 * 109.46891 * 324.62323 * 22 21 6 41 41 H 1.07997 * 120.02830 * 180.30018 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9863 5.0184 0.0028 8 7 4.5356 5.2868 1.3385 9 6 3.4635 5.5758 2.3003 10 6 5.5133 6.3824 1.2953 11 1 6.2357 6.1934 0.5011 12 6 4.7888 7.7021 1.0224 13 6 6.2313 6.4674 2.6175 14 1 5.9855 5.7770 3.4108 15 6 7.2011 7.4274 2.8148 16 7 7.5000 8.2685 1.8490 17 14 8.0906 7.5333 4.4541 18 1 9.3008 6.6736 4.4170 19 1 8.4905 8.9403 4.7102 20 1 7.1874 7.0702 5.5381 21 6 4.0561 2.5169 0.0006 22 6 5.5609 2.5979 0.0006 23 6 3.4312 1.2847 0.0058 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 0.2129 2.3204 0.0014 28 1 1.3342 4.5114 0.0011 29 1 4.7946 5.0149 -0.7286 30 1 3.2653 5.7938 -0.2562 31 1 2.8609 4.6803 2.4525 32 1 3.9007 5.8851 3.2496 33 1 2.8334 6.3761 1.9125 34 1 4.2696 7.6405 0.0660 35 1 4.0665 7.8909 1.8166 36 1 5.5143 8.5148 0.9899 37 1 8.1825 8.9436 1.9876 38 1 5.9185 2.7127 1.0238 39 1 5.9739 1.6850 -0.4285 40 1 5.8786 3.4547 -0.5937 41 1 4.0206 0.3798 0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891934155.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:50 Heat of formation + Delta-G solvation = -27.614263 kcal Electronic energy + Delta-G solvation = -20147.331559 eV Core-core repulsion = 17219.886486 eV Total energy + Delta-G solvation = -2927.445072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.17360 -39.45165 -37.98757 -34.77070 -33.40502 -32.29782 -30.26409 -28.88419 -27.47403 -27.36921 -27.16801 -24.88549 -23.04118 -21.75573 -20.71536 -18.59171 -18.21535 -17.35266 -17.06449 -16.58740 -16.30282 -16.04000 -15.44520 -15.12604 -14.76451 -14.46568 -14.37611 -14.15092 -13.99187 -13.50187 -13.08595 -13.02131 -12.91297 -12.80143 -12.67571 -12.58503 -12.40932 -12.35113 -12.14591 -12.01197 -11.69508 -11.60609 -11.51936 -10.88797 -10.45501 -9.65198 -9.00971 -8.76515 -8.07219 -6.17313 0.45646 0.51099 1.43906 1.45027 1.54740 2.42529 2.45295 2.79713 3.21922 3.58499 3.90257 3.95415 4.10396 4.26602 4.40243 4.43117 4.43474 4.51784 4.61333 4.70188 4.71400 4.76279 4.81451 4.85634 4.91686 4.92995 5.02163 5.12155 5.18977 5.21271 5.30361 5.44058 5.49285 5.57197 5.73623 5.82640 5.87666 5.90212 6.25666 6.52077 6.54394 6.78532 6.96535 7.51801 8.98546 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033824 B = 0.004394 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.611008 B = 6370.302695 C = 6550.564024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.076 4.076 6 C -0.119 4.119 7 C 0.101 3.899 8 N -0.531 5.531 9 C 0.046 3.954 10 C 0.217 3.783 11 H 0.008 0.992 12 C -0.158 4.158 13 C -0.509 4.509 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.921 5.921 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.285 1.285 20 H -0.270 1.270 21 C -0.030 4.030 22 C -0.103 4.103 23 C -0.167 4.167 24 H 0.119 0.881 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.150 0.850 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.019 0.981 34 H 0.023 0.977 35 H 0.031 0.969 36 H 0.060 0.940 37 H 0.260 0.740 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 -12.713 -4.632 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.072 3.928 4 C -0.231 4.231 5 C -0.095 4.095 6 C -0.119 4.119 7 C -0.027 4.027 8 N -0.254 5.254 9 C -0.103 4.103 10 C 0.110 3.890 11 H 0.026 0.974 12 C -0.217 4.217 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.781 3.219 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.195 1.195 21 C -0.031 4.031 22 C -0.160 4.160 23 C -0.186 4.186 24 H 0.137 0.863 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.003 -13.179 -4.505 19.054 hybrid contribution 0.104 1.363 0.488 1.451 sum -12.899 -11.817 -4.017 17.949 Atomic orbital electron populations 1.23320 0.76604 1.05454 1.02154 1.86025 1.23367 1.26722 1.88851 1.19076 0.92277 0.84687 0.96783 1.21327 1.00853 0.91494 1.09465 1.20985 0.93409 0.97891 0.97190 1.19680 0.93684 0.94454 1.04120 1.20879 0.97230 0.92791 0.91786 1.62198 1.14446 1.42798 1.05997 1.22117 0.93082 0.98507 0.96556 1.19084 0.89090 0.85149 0.95709 0.97386 1.22217 0.99586 1.03007 0.96924 1.21349 1.19390 1.14687 0.99310 0.92765 1.25630 0.97693 0.95401 0.99835 1.70003 1.32725 1.19725 1.33691 0.85601 0.78875 0.76972 0.80419 1.20365 1.21091 1.19490 1.19642 0.96511 0.91589 0.95364 1.20694 0.90505 1.02220 1.02547 1.20395 0.91908 0.97968 1.08331 0.86277 0.92024 0.91722 0.83265 0.84968 0.91567 0.94789 0.92263 0.92817 0.96283 0.95789 0.94950 0.92101 0.93071 0.91558 0.90501 0.92249 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.80 10.50 -92.37 -0.97 -8.77 16 3 C 0.12 3.08 6.69 22.51 0.15 3.23 16 4 C -0.21 -5.12 9.04 22.37 0.20 -4.92 16 5 C -0.08 -2.07 9.46 22.25 0.21 -1.86 16 6 C -0.12 -3.79 4.68 -19.85 -0.09 -3.88 16 7 C 0.10 3.65 3.85 85.56 0.33 3.98 16 8 N -0.53 -22.41 4.51 -906.03 -4.09 -26.50 16 9 C 0.05 1.79 8.32 127.69 1.06 2.85 16 10 C 0.22 10.85 2.30 44.17 0.10 10.95 16 11 H 0.01 0.46 7.86 -2.38 -0.02 0.44 16 12 C -0.16 -7.61 8.25 71.98 0.59 -7.02 16 13 C -0.51 -27.83 7.82 25.60 0.20 -27.63 16 14 H 0.05 2.99 7.19 -2.91 -0.02 2.97 16 15 C 0.01 0.70 5.30 84.65 0.45 1.14 16 16 N -0.92 -52.78 11.32 21.45 0.24 -52.54 16 17 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 C -0.03 -0.95 5.88 -19.88 -0.12 -1.07 16 22 C -0.10 -3.20 9.39 71.24 0.67 -2.53 16 23 C -0.17 -4.76 9.62 22.37 0.22 -4.55 16 24 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 0.76 7.66 -2.38 -0.02 0.75 16 26 H 0.06 0.75 7.66 -2.39 -0.02 0.74 16 27 H 0.15 2.66 6.30 -2.91 -0.02 2.64 16 28 H 0.13 3.17 8.00 -2.91 -0.02 3.15 16 29 H 0.07 2.49 6.40 -2.39 -0.02 2.47 16 30 H 0.03 1.19 6.98 -2.39 -0.02 1.18 16 31 H 0.06 2.09 7.50 -2.39 -0.02 2.07 16 32 H 0.05 2.29 6.64 -2.39 -0.02 2.28 16 33 H 0.02 0.70 6.72 -2.39 -0.02 0.69 16 34 H 0.02 1.02 7.06 -2.39 -0.02 1.00 16 35 H 0.03 1.50 6.57 -2.39 -0.02 1.48 16 36 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 37 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.08 1.95 8.05 -2.39 -0.02 1.93 16 40 H 0.06 1.96 6.46 -2.39 -0.02 1.94 16 41 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -61.33 323.34 3.31 -58.02 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 1.01 Total: 13.85 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 5.09 Total: -29.92 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -3.84 Total: -79.04 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.97 Total: -8.77 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.33 3.31 -58.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934155.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.406 kcal (2) G-P(sol) polarization free energy of solvation -61.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds