Wall clock time and date at job start Sun Mar 29 2020 23:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48501 * 109.47181 * 270.00123 * 3 2 1 5 5 H 1.48500 * 109.47243 * 29.99913 * 3 2 1 6 6 H 1.48502 * 109.47566 * 149.99756 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99594 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00321 * 179.97438 * 7 2 1 10 10 C 1.53037 * 109.46209 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31215 * 181.38858 * 10 9 7 12 12 N 1.46927 * 108.77445 * 305.36319 * 11 10 9 13 13 C 1.34779 * 120.63364 * 233.58635 * 12 11 10 14 14 O 1.21275 * 119.99675 * 354.72828 * 13 12 11 15 15 C 1.50697 * 119.99929 * 175.00439 * 13 12 11 16 16 C 1.53006 * 115.54950 * 181.80557 * 15 13 12 17 17 C 1.52998 * 117.49621 * 34.20116 * 16 15 13 18 18 C 1.53002 * 60.00336 * 252.51323 * 17 16 15 19 19 C 1.52995 * 117.50248 * 36.09669 * 15 13 12 20 20 C 1.52993 * 59.99987 * 252.50831 * 19 15 13 21 21 C 1.46930 * 118.73589 * 53.86360 * 12 11 10 22 22 C 1.53042 * 109.46108 * 300.07541 * 9 7 2 23 23 H 0.96998 * 119.99688 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.44652 * 60.03575 * 9 7 2 25 25 H 1.08999 * 109.49487 * 61.43673 * 10 9 7 26 26 H 1.08998 * 109.49661 * 301.34204 * 10 9 7 27 27 H 1.08998 * 109.58568 * 185.58205 * 11 10 9 28 28 H 1.08999 * 109.58932 * 65.15396 * 11 10 9 29 29 H 1.08997 * 115.55172 * 179.91352 * 16 15 13 30 30 H 1.09003 * 117.50363 * 0.02562 * 17 16 15 31 31 H 1.09002 * 117.49482 * 145.02478 * 17 16 15 32 32 H 1.09001 * 117.49899 * 252.51474 * 18 17 16 33 33 H 1.09003 * 117.51506 * 107.48019 * 18 17 16 34 34 H 1.09001 * 117.49857 * 359.97438 * 19 15 13 35 35 H 1.08997 * 117.50063 * 145.01793 * 19 15 13 36 36 H 1.09000 * 117.50321 * 252.50553 * 20 19 15 37 37 H 1.09004 * 117.49664 * 107.49251 * 20 19 15 38 38 H 1.09002 * 109.58929 * 65.92582 * 21 12 11 39 39 H 1.09000 * 109.58425 * 186.35252 * 21 12 11 40 40 H 1.09003 * 109.49414 * 298.56782 * 22 9 7 41 41 H 1.09002 * 109.49656 * 58.65859 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0213 -2.6371 0.0001 11 6 5.5529 -2.6333 0.0345 12 7 6.0490 -1.8181 -1.0827 13 6 6.9429 -2.3219 -1.9565 14 8 7.4176 -3.4225 -1.7715 15 6 7.3571 -1.5152 -3.1601 16 6 8.3438 -2.2016 -4.1068 17 6 8.2204 -3.7169 -4.2785 18 6 9.3897 -3.1296 -3.4856 19 6 7.4816 -0.0002 -2.9864 20 6 6.3126 -0.5856 -3.7811 21 6 5.5566 -0.4411 -1.2256 22 6 4.0209 -0.4719 -1.2494 23 1 -0.4849 0.8401 -0.0004 24 1 3.8748 -0.6802 0.8899 25 1 3.6790 -3.1439 -0.9021 26 1 3.6390 -3.1579 0.8779 27 1 5.9231 -3.6536 -0.0651 28 1 5.8961 -2.2082 0.9777 29 1 8.6423 -1.6187 -4.9781 30 1 7.4360 -4.2248 -3.7173 31 1 8.4375 -4.1311 -5.2631 32 1 10.3761 -3.1575 -3.9486 33 1 9.3750 -3.2509 -2.4025 34 1 7.2634 0.4130 -2.0016 35 1 8.2666 0.5078 -3.5464 36 1 6.3285 -0.4627 -4.8640 37 1 5.3257 -0.5575 -3.3190 38 1 5.9002 0.1591 -0.3831 39 1 5.9294 -0.0147 -2.1569 40 1 3.6785 -0.9995 -2.1397 41 1 3.6383 0.5487 -1.2611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897354462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:48 Heat of formation + Delta-G solvation = 63.744464 kcal Electronic energy + Delta-G solvation = -21079.608686 eV Core-core repulsion = 18156.125225 eV Total energy + Delta-G solvation = -2923.483461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.11074 -37.78846 -37.15234 -35.50909 -33.25863 -31.39907 -30.48235 -26.97194 -24.72043 -23.40185 -22.93598 -22.33910 -21.96321 -21.41980 -19.66603 -18.50364 -16.80227 -16.50605 -16.01748 -15.44470 -14.97114 -14.69207 -14.47972 -14.00437 -13.51202 -13.39088 -12.89979 -12.86753 -12.50185 -12.15750 -11.99347 -11.56167 -11.46436 -11.42925 -11.12953 -10.98666 -10.91924 -10.69421 -10.23187 -10.21205 -9.90722 -9.74065 -9.45281 -9.39724 -9.26498 -9.01365 -8.59566 -8.18008 -6.12871 -4.12239 2.57444 3.16807 3.23011 3.28784 3.33808 3.62545 4.14492 4.32571 4.33513 4.43903 4.79593 4.82920 5.06831 5.14634 5.22205 5.31440 5.35742 5.40644 5.58212 5.64033 5.69724 5.74600 5.80218 5.81782 5.87628 5.92183 5.96726 5.99233 6.16340 6.26986 6.33798 6.46862 6.59054 6.61616 6.73937 6.87639 7.14868 7.44145 7.68266 7.73734 8.40799 8.46779 8.91606 9.48956 11.00576 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031421 B = 0.006011 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.919909 B = 4657.233952 C = 5108.530589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.514 4.514 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.110 3.890 12 N -0.596 5.596 13 C 0.548 3.452 14 O -0.544 6.544 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.167 4.167 18 C -0.168 4.168 19 C -0.175 4.175 20 C -0.173 4.173 21 C 0.035 3.965 22 C -0.136 4.136 23 H 0.264 0.736 24 H 0.027 0.973 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.037 0.215 -7.037 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.012 4.012 12 N -0.327 5.327 13 C 0.337 3.663 14 O -0.423 6.423 15 C -0.123 4.123 16 C -0.133 4.133 17 C -0.204 4.204 18 C -0.205 4.205 19 C -0.211 4.211 20 C -0.210 4.210 21 C -0.086 4.086 22 C -0.173 4.173 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.104 -0.266 -6.907 17.524 hybrid contribution 0.175 1.109 -0.014 1.123 sum 16.278 0.843 -6.921 17.708 Atomic orbital electron populations 1.69899 1.06305 1.26941 1.50698 1.25044 0.94693 0.99032 0.94537 0.86879 0.80019 0.83710 0.77852 1.20458 1.22440 1.19030 1.21052 0.88737 0.94499 1.50854 0.90857 1.19119 0.96785 0.91694 0.92789 1.21825 0.91791 0.99566 1.01917 1.21769 0.95953 0.95660 0.87829 1.48008 1.42219 1.14518 1.27987 1.19399 0.78554 0.85916 0.82454 1.90587 1.54934 1.21125 1.75628 1.20937 1.02269 0.91848 0.97283 1.21342 1.00072 0.92692 0.99231 1.23014 1.02214 0.94370 1.00764 1.23048 0.92860 1.03058 1.01508 1.23660 1.01055 0.93178 1.03246 1.23693 0.95561 1.00994 1.00725 1.23669 0.97589 0.82623 1.04702 1.22470 0.91608 1.01045 1.02219 0.92639 0.95476 0.92322 0.91347 0.89888 0.92130 0.87497 0.87423 0.89718 0.89845 0.87260 0.86250 0.87703 0.87573 0.85581 0.92015 0.85229 0.91572 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 3 Si 0.89 20.83 24.38 -169.99 -4.14 16.68 16 4 H -0.28 -6.23 6.86 56.52 0.39 -5.85 16 5 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.27 -5.89 6.53 56.52 0.37 -5.52 16 7 C -0.51 -13.91 9.14 -34.44 -0.31 -14.23 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.02 0.33 1.65 -91.73 -0.15 0.18 16 10 C -0.11 -2.19 5.30 -26.61 -0.14 -2.33 16 11 C 0.11 1.88 6.41 -3.71 -0.02 1.85 16 12 N -0.60 -9.90 2.97 -172.50 -0.51 -10.41 16 13 C 0.55 8.98 7.22 -10.99 -0.08 8.90 16 14 O -0.54 -9.94 11.27 5.56 0.06 -9.87 16 15 C -0.12 -1.59 2.47 -155.66 -0.38 -1.97 16 16 C -0.11 -1.39 5.85 -90.61 -0.53 -1.92 16 17 C -0.17 -2.15 9.66 -26.73 -0.26 -2.41 16 18 C -0.17 -2.11 9.66 -26.73 -0.26 -2.37 16 19 C -0.17 -1.90 9.03 -26.74 -0.24 -2.14 16 20 C -0.17 -2.04 9.03 -26.74 -0.24 -2.28 16 21 C 0.04 0.56 4.05 -3.49 -0.01 0.55 16 22 C -0.14 -2.66 4.40 -26.39 -0.12 -2.78 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.41 7.04 -51.93 -0.37 1.05 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.11 1.67 6.34 -51.93 -0.33 1.34 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 1.63 6.22 -51.93 -0.32 1.30 16 34 H 0.12 1.32 5.46 -51.93 -0.28 1.03 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.13 1.68 4.62 -51.93 -0.24 1.44 16 38 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 39 H 0.13 1.75 1.61 -62.65 -0.10 1.65 16 40 H 0.07 1.32 7.52 -51.93 -0.39 0.93 16 41 H 0.06 1.19 3.24 -51.93 -0.17 1.02 16 LS Contribution 301.17 15.07 4.54 4.54 Total: -1.00 -30.07 301.17 -8.11 -38.18 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.98 Total: 6.22 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -2.85 Total: -19.14 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.26 Total: -36.61 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.14 Total: 16.68 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.07 -8.11 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897354462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.922 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds