Wall clock time and date at job start Sun Mar 29 2020 23:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00197 * 2 1 4 4 H 1.48501 * 109.47181 * 270.00123 * 3 2 1 5 5 H 1.48500 * 109.47243 * 29.99913 * 3 2 1 6 6 H 1.48502 * 109.47566 * 149.99756 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99594 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00321 * 179.97438 * 7 2 1 10 10 C 1.53037 * 109.46209 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31215 * 181.38858 * 10 9 7 12 12 N 1.46927 * 108.77445 * 305.36319 * 11 10 9 13 13 C 1.34779 * 120.63364 * 233.58635 * 12 11 10 14 14 O 1.21275 * 119.99675 * 354.72828 * 13 12 11 15 15 C 1.50697 * 119.99929 * 175.00439 * 13 12 11 16 16 C 1.53006 * 115.54950 * 181.80557 * 15 13 12 17 17 C 1.52998 * 117.49621 * 34.20116 * 16 15 13 18 18 C 1.53002 * 60.00336 * 252.51323 * 17 16 15 19 19 C 1.52995 * 117.50248 * 36.09669 * 15 13 12 20 20 C 1.52993 * 59.99987 * 252.50831 * 19 15 13 21 21 C 1.46930 * 118.73589 * 53.86360 * 12 11 10 22 22 C 1.53042 * 109.46108 * 300.07541 * 9 7 2 23 23 H 0.96998 * 119.99688 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.44652 * 60.03575 * 9 7 2 25 25 H 1.08999 * 109.49487 * 61.43673 * 10 9 7 26 26 H 1.08998 * 109.49661 * 301.34204 * 10 9 7 27 27 H 1.08998 * 109.58568 * 185.58205 * 11 10 9 28 28 H 1.08999 * 109.58932 * 65.15396 * 11 10 9 29 29 H 1.08997 * 115.55172 * 179.91352 * 16 15 13 30 30 H 1.09003 * 117.50363 * 0.02562 * 17 16 15 31 31 H 1.09002 * 117.49482 * 145.02478 * 17 16 15 32 32 H 1.09001 * 117.49899 * 252.51474 * 18 17 16 33 33 H 1.09003 * 117.51506 * 107.48019 * 18 17 16 34 34 H 1.09001 * 117.49857 * 359.97438 * 19 15 13 35 35 H 1.08997 * 117.50063 * 145.01793 * 19 15 13 36 36 H 1.09000 * 117.50321 * 252.50553 * 20 19 15 37 37 H 1.09004 * 117.49664 * 107.49251 * 20 19 15 38 38 H 1.09002 * 109.58929 * 65.92582 * 21 12 11 39 39 H 1.09000 * 109.58425 * 186.35252 * 21 12 11 40 40 H 1.09003 * 109.49414 * 298.56782 * 22 9 7 41 41 H 1.09002 * 109.49656 * 58.65859 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0213 -2.6371 0.0001 11 6 5.5529 -2.6333 0.0345 12 7 6.0490 -1.8181 -1.0827 13 6 6.9429 -2.3219 -1.9565 14 8 7.4176 -3.4225 -1.7715 15 6 7.3571 -1.5152 -3.1601 16 6 8.3438 -2.2016 -4.1068 17 6 8.2204 -3.7169 -4.2785 18 6 9.3897 -3.1296 -3.4856 19 6 7.4816 -0.0002 -2.9864 20 6 6.3126 -0.5856 -3.7811 21 6 5.5566 -0.4411 -1.2256 22 6 4.0209 -0.4719 -1.2494 23 1 -0.4849 0.8401 -0.0004 24 1 3.8748 -0.6802 0.8899 25 1 3.6790 -3.1439 -0.9021 26 1 3.6390 -3.1579 0.8779 27 1 5.9231 -3.6536 -0.0651 28 1 5.8961 -2.2082 0.9777 29 1 8.6423 -1.6187 -4.9781 30 1 7.4360 -4.2248 -3.7173 31 1 8.4375 -4.1311 -5.2631 32 1 10.3761 -3.1575 -3.9486 33 1 9.3750 -3.2509 -2.4025 34 1 7.2634 0.4130 -2.0016 35 1 8.2666 0.5078 -3.5464 36 1 6.3285 -0.4627 -4.8640 37 1 5.3257 -0.5575 -3.3190 38 1 5.9002 0.1591 -0.3831 39 1 5.9294 -0.0147 -2.1569 40 1 3.6785 -0.9995 -2.1397 41 1 3.6383 0.5487 -1.2611 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897354462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:46:48 Heat of formation + Delta-G solvation = 45.845599 kcal Electronic energy + Delta-G solvation = -21080.384839 eV Core-core repulsion = 18156.125225 eV Total energy + Delta-G solvation = -2924.259614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.26587 -39.10811 -38.32935 -36.69297 -34.98089 -33.21761 -31.91641 -28.60019 -26.08043 -24.79601 -24.00696 -23.56314 -22.92883 -22.75649 -21.04443 -19.86896 -18.83062 -17.71365 -17.16711 -16.77424 -16.26070 -16.18668 -15.80221 -15.14897 -15.02909 -14.81370 -14.62168 -14.29267 -13.94739 -13.63966 -13.28708 -12.99599 -12.60973 -12.54074 -12.39764 -12.17100 -12.10471 -12.09790 -11.91434 -11.65846 -11.47558 -11.22330 -11.04449 -10.80833 -10.62455 -10.40722 -10.37905 -9.57340 -8.28636 -6.34066 1.31129 1.39087 1.42596 1.49850 1.99244 2.34580 2.64938 3.06159 3.22786 3.35359 3.45545 3.74334 3.92061 3.97202 4.09544 4.16493 4.23416 4.27053 4.35517 4.37439 4.40146 4.50773 4.64819 4.70506 4.75150 4.83918 4.88892 4.93277 4.97810 5.00533 5.07730 5.09321 5.13266 5.36747 5.37430 5.46618 5.56234 5.66093 5.72235 6.30430 6.45589 6.72660 7.15739 7.31528 8.88587 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031421 B = 0.006011 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.919909 B = 4657.233952 C = 5108.530589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.254 1.254 5 H -0.303 1.303 6 H -0.238 1.238 7 C -0.523 4.523 8 H 0.024 0.976 9 C 0.015 3.985 10 C -0.106 4.106 11 C 0.118 3.882 12 N -0.602 5.602 13 C 0.540 3.460 14 O -0.570 6.570 15 C -0.144 4.144 16 C -0.102 4.102 17 C -0.180 4.180 18 C -0.170 4.170 19 C -0.154 4.154 20 C -0.172 4.172 21 C 0.042 3.958 22 C -0.132 4.132 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.055 0.945 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.307 2.746 -8.556 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.231 1.231 6 H -0.162 1.162 7 C -0.561 4.561 8 H 0.043 0.957 9 C -0.004 4.004 10 C -0.144 4.144 11 C -0.005 4.005 12 N -0.334 5.334 13 C 0.330 3.670 14 O -0.450 6.450 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.217 4.217 18 C -0.207 4.207 19 C -0.190 4.190 20 C -0.208 4.208 21 C -0.078 4.078 22 C -0.170 4.170 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.157 0.843 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.074 0.926 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 19.398 2.248 -8.432 21.271 hybrid contribution -0.941 0.153 0.489 1.071 sum 18.457 2.401 -7.943 20.237 Atomic orbital electron populations 1.70076 1.08557 1.28119 1.52669 1.26008 0.95476 1.03485 0.93983 0.85816 0.79374 0.77849 0.79336 1.17938 1.23138 1.16154 1.21364 0.91612 0.92781 1.50323 0.95713 1.19080 0.93396 0.93638 0.94322 1.21697 0.93919 0.97908 1.00904 1.21594 0.93625 0.96162 0.89103 1.48090 1.42500 1.14798 1.27963 1.20079 0.77955 0.85940 0.83026 1.90585 1.55778 1.22423 1.76241 1.20974 1.03989 0.93171 0.96549 1.21510 0.98867 0.92068 0.99551 1.22954 1.01719 0.95624 1.01401 1.22993 0.94042 1.03637 0.99996 1.23803 1.00987 0.90706 1.03486 1.23738 0.94675 1.00078 1.02324 1.23807 0.94395 0.82491 1.07128 1.22313 0.94683 0.99996 0.99990 0.92598 0.95260 0.94098 0.91796 0.90182 0.90599 0.84293 0.90844 0.87674 0.87447 0.90074 0.86109 0.84489 0.85066 0.87324 0.90546 0.82154 0.92590 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 2 C 0.01 0.39 5.45 84.66 0.46 0.86 16 3 Si 0.95 42.10 24.38 68.60 1.67 43.77 16 4 H -0.25 -10.26 6.86 99.48 0.68 -9.57 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.24 -9.43 6.53 99.48 0.65 -8.78 16 7 C -0.52 -29.40 9.14 25.60 0.23 -29.16 16 8 H 0.02 1.57 7.99 -2.91 -0.02 1.55 16 9 C 0.01 0.64 1.65 -11.51 -0.02 0.62 16 10 C -0.11 -4.21 5.30 30.67 0.16 -4.05 16 11 C 0.12 3.95 6.41 86.36 0.55 4.51 16 12 N -0.60 -19.01 2.97 -818.07 -2.43 -21.44 16 13 C 0.54 16.92 7.22 87.66 0.63 17.55 16 14 O -0.57 -20.83 11.27 -3.01 -0.03 -20.87 16 15 C -0.14 -3.34 2.47 -52.93 -0.13 -3.47 16 16 C -0.10 -2.12 5.85 -10.79 -0.06 -2.18 16 17 C -0.18 -4.38 9.66 30.59 0.30 -4.09 16 18 C -0.17 -3.92 9.66 30.60 0.30 -3.63 16 19 C -0.15 -2.53 9.03 30.59 0.28 -2.25 16 20 C -0.17 -3.32 9.03 30.59 0.28 -3.04 16 21 C 0.04 1.21 4.05 86.51 0.35 1.56 16 22 C -0.13 -4.96 4.40 30.82 0.14 -4.82 16 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 24 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 2.75 7.04 -2.39 -0.02 2.73 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.31 6.34 -2.39 -0.02 2.29 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.36 6.22 -2.39 -0.01 2.35 16 34 H 0.12 2.01 5.46 -2.39 -0.01 2.00 16 35 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.11 2.55 4.62 -2.38 -0.01 2.53 16 38 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 39 H 0.16 3.67 1.61 -12.46 -0.02 3.65 16 40 H 0.06 2.19 7.52 -2.39 -0.02 2.18 16 41 H 0.05 2.09 3.24 -2.39 -0.01 2.09 16 Total: -1.00 -69.24 301.17 3.91 -65.33 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.94 Total: 23.72 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.46 Total: -31.58 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.13 Total: -80.37 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.03 Total: -20.87 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.67 Total: 43.77 kcal Total: -69.24 3.91 -65.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897354462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.179 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds