Wall clock time and date at job start Mon Mar 30 2020 00:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48500 * 109.46591 * 269.99738 * 3 2 1 5 5 H 1.48499 * 109.47000 * 29.99524 * 3 2 1 6 6 H 1.48500 * 109.47181 * 150.00165 * 3 2 1 7 7 C 1.37887 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99575 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.49990 * 299.92605 * 9 7 2 11 11 C 1.53039 * 109.50032 * 60.00045 * 9 7 2 12 12 C 1.53039 * 109.53597 * 181.34813 * 11 9 7 13 13 C 1.53194 * 109.34100 * 298.61299 * 12 11 9 14 14 N 1.46999 * 108.73526 * 54.62239 * 13 12 11 15 15 C 1.34782 * 120.60975 * 126.38751 * 14 13 12 16 16 O 1.21272 * 120.00312 * 353.49867 * 15 14 13 17 17 C 1.50707 * 119.99561 * 173.49535 * 15 14 13 18 18 C 1.52991 * 115.54715 * 188.40557 * 17 15 14 19 19 C 1.53002 * 117.50261 * 34.21044 * 18 17 15 20 20 C 1.52998 * 59.99923 * 252.50579 * 19 18 17 21 21 C 1.53001 * 117.49732 * 42.70494 * 17 15 14 22 22 C 1.53000 * 60.00030 * 252.50635 * 21 17 15 23 23 C 1.46921 * 118.75676 * 306.41357 * 14 13 12 24 24 H 0.96995 * 120.00120 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46054 * 61.32387 * 11 9 7 26 26 H 1.08998 * 109.45654 * 301.36239 * 11 9 7 27 27 H 1.08994 * 109.50293 * 58.58267 * 12 11 9 28 28 H 1.09003 * 109.49707 * 178.64788 * 12 11 9 29 29 H 1.08997 * 109.59087 * 174.43690 * 13 12 11 30 30 H 1.08996 * 109.58580 * 294.87212 * 13 12 11 31 31 H 1.09000 * 115.54830 * 179.91707 * 18 17 15 32 32 H 1.08999 * 117.49370 * 359.97438 * 19 18 17 33 33 H 1.08997 * 117.50198 * 145.01486 * 19 18 17 34 34 H 1.09003 * 117.50015 * 252.50143 * 20 19 18 35 35 H 1.09004 * 117.52001 * 107.47618 * 20 19 18 36 36 H 1.09003 * 117.49736 * 359.97438 * 21 17 15 37 37 H 1.08993 * 117.50188 * 145.02046 * 21 17 15 38 38 H 1.09000 * 117.50243 * 252.51554 * 22 21 17 39 39 H 1.09005 * 117.49955 * 107.48615 * 22 21 17 40 40 H 1.09000 * 109.58626 * 293.81588 * 23 14 13 41 41 H 1.08998 * 109.70576 * 173.46430 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6248 -2.5577 0.8908 11 6 0.3714 -2.5811 -1.2491 12 6 -0.4197 -3.8911 -1.2331 13 6 0.5552 -5.0727 -1.2506 14 7 1.4987 -4.9230 -0.1333 15 6 1.6749 -5.9216 0.7546 16 8 0.9696 -6.9070 0.7069 17 6 2.7484 -5.8135 1.8068 18 6 2.9945 -7.0789 2.6307 19 6 2.8293 -8.4256 1.9237 20 6 1.7866 -7.9642 2.9438 21 6 2.9113 -4.4666 2.5141 22 6 3.9560 -4.9271 1.4956 23 6 2.2454 -3.6645 -0.0026 24 1 -0.4850 0.8400 -0.0004 25 1 1.0003 -2.5475 -2.1387 26 1 -0.3207 -1.7392 -1.2618 27 1 -1.0301 -3.9366 -0.3313 28 1 -1.0638 -3.9379 -2.1112 29 1 0.0015 -6.0050 -1.1398 30 1 1.1032 -5.0804 -2.1928 31 1 3.7719 -7.0012 3.3908 32 1 2.5449 -8.4101 0.8715 33 1 3.4983 -9.2342 2.2183 34 1 1.7694 -8.4693 3.9096 35 1 0.8164 -7.6449 2.5630 36 1 2.2422 -3.6586 2.2181 37 1 3.1938 -4.4818 3.5667 38 1 4.9258 -5.2453 1.8781 39 1 3.9740 -4.4221 0.5297 40 1 2.9312 -3.5575 -0.8430 41 1 2.8087 -3.6666 0.9306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898581565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:16 Heat of formation + Delta-G solvation = 52.702661 kcal Electronic energy + Delta-G solvation = -21104.618698 eV Core-core repulsion = 18180.656429 eV Total energy + Delta-G solvation = -2923.962269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79306 -37.51353 -36.86393 -35.21788 -33.23977 -31.21602 -30.08869 -25.81275 -25.18876 -23.38525 -22.61936 -22.27041 -21.82885 -20.93053 -19.49812 -18.33619 -16.49992 -16.15687 -15.65604 -15.00068 -14.78120 -14.55255 -14.29629 -13.88120 -13.28252 -13.06249 -12.83544 -12.46376 -12.29962 -11.98480 -11.55778 -11.29082 -11.20807 -11.02213 -11.00366 -10.82484 -10.70206 -10.64628 -10.23607 -9.98407 -9.91928 -9.77119 -9.33889 -9.22345 -8.98382 -8.78593 -8.43823 -7.87645 -6.08011 -4.16868 2.82921 3.24615 3.32366 3.33905 3.52229 3.84071 4.35427 4.39507 4.57881 4.74042 5.06739 5.08987 5.21414 5.27355 5.44814 5.49224 5.64259 5.75475 5.76668 5.86681 5.91937 5.94697 6.05793 6.07920 6.15871 6.23202 6.28290 6.32597 6.45592 6.54818 6.56174 6.63712 6.78407 6.98693 7.15368 7.32444 7.62507 7.84227 7.95733 8.05511 8.30289 8.65781 8.87230 9.49028 10.97001 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026968 B = 0.006132 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.025933 B = 4564.905453 C = 5250.209823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.115 3.885 14 N -0.598 5.598 15 C 0.548 3.452 16 O -0.554 6.554 17 C -0.125 4.125 18 C -0.112 4.112 19 C -0.169 4.169 20 C -0.169 4.169 21 C -0.164 4.164 22 C -0.176 4.176 23 C 0.051 3.949 24 H 0.261 0.739 25 H 0.034 0.966 26 H 0.094 0.906 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.399 -9.677 2.429 11.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.007 4.007 14 N -0.329 5.329 15 C 0.337 3.663 16 O -0.434 6.434 17 C -0.128 4.128 18 C -0.130 4.130 19 C -0.206 4.206 20 C -0.206 4.206 21 C -0.201 4.201 22 C -0.213 4.213 23 C -0.070 4.070 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.113 0.887 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.144 0.856 40 H 0.073 0.927 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.870 -10.057 2.382 11.425 hybrid contribution 0.443 1.064 -0.122 1.159 sum 5.312 -8.993 2.260 10.687 Atomic orbital electron populations 1.69876 1.05940 1.26580 1.50039 1.24943 0.94811 0.99099 0.94836 0.86603 0.79892 0.83440 0.78128 1.20705 1.21252 1.19807 1.21050 0.92897 0.90211 1.51494 0.92416 1.18981 0.92864 0.91077 0.94950 0.95291 1.21631 0.99460 0.95512 0.98489 1.21986 0.97737 0.96554 1.00903 1.21580 0.91377 0.99631 0.88150 1.48186 1.42011 1.15752 1.26953 1.19429 0.83365 0.82435 0.81108 1.90546 1.47705 1.31896 1.73230 1.20906 0.98799 0.92984 1.00114 1.21333 1.01587 0.88927 1.01163 1.22924 1.02330 0.95793 0.99576 1.23134 0.96105 1.02463 0.98900 1.23555 1.02565 0.95630 0.98316 1.23828 0.93281 1.01759 1.02427 1.23661 0.96392 0.82956 1.03944 0.92889 0.94703 0.88723 0.92495 0.92657 0.90301 0.92420 0.87621 0.88060 0.89843 0.90031 0.86664 0.85259 0.87921 0.88282 0.85609 0.92666 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.12 11.31 55.43 0.63 -23.49 16 2 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.15 29.54 -169.99 -5.02 15.12 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.52 -13.03 8.57 -34.44 -0.29 -13.32 16 8 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.04 0.93 2.03 -91.65 -0.19 0.74 16 10 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 11 C -0.11 -2.53 4.96 -26.69 -0.13 -2.66 16 12 C -0.13 -2.57 6.08 -26.61 -0.16 -2.73 16 13 C 0.11 2.07 6.45 -3.67 -0.02 2.05 16 14 N -0.60 -11.12 2.97 -172.71 -0.51 -11.63 16 15 C 0.55 10.06 7.16 -10.98 -0.08 9.99 16 16 O -0.55 -11.05 11.35 5.56 0.06 -10.99 16 17 C -0.12 -1.93 2.47 -155.66 -0.38 -2.31 16 18 C -0.11 -1.54 5.85 -90.62 -0.53 -2.07 16 19 C -0.17 -2.35 9.67 -26.73 -0.26 -2.61 16 20 C -0.17 -2.42 9.66 -26.73 -0.26 -2.68 16 21 C -0.16 -2.39 9.04 -26.73 -0.24 -2.63 16 22 C -0.18 -2.40 9.03 -26.73 -0.24 -2.64 16 23 C 0.05 0.96 3.10 -3.71 -0.01 0.95 16 24 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.62 6.55 -51.93 -0.34 1.28 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.12 1.96 6.00 -51.93 -0.31 1.65 16 36 H 0.13 2.21 5.75 -51.93 -0.30 1.91 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.13 1.82 4.92 -51.93 -0.26 1.56 16 40 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 41 H 0.13 2.19 1.70 -55.21 -0.09 2.09 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -27.41 309.08 -9.23 -36.64 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.15 Total: 8.03 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.90 Total: -18.34 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.11 Total: -35.12 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.06 Total: -10.99 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.41 -9.23 -36.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898581565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.347 kcal (2) G-P(sol) polarization free energy of solvation -27.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds