Wall clock time and date at job start Mon Mar 30 2020 00:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38259 * 119.99853 * 2 1 4 4 C 1.38215 * 119.99504 * 180.02562 * 3 2 1 5 5 C 1.38253 * 120.00374 * 359.97438 * 4 3 2 6 6 C 1.38219 * 119.99975 * 359.95692 * 5 4 3 7 7 C 1.50698 * 120.00191 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46910 * 205.00006 * 7 6 5 9 9 O 1.42906 * 109.46873 * 324.99441 * 7 6 5 10 10 C 1.52993 * 109.47393 * 84.99620 * 7 6 5 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 7 6 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 7 13 13 C 1.53004 * 109.46916 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.46700 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.46820 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00070 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00228 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46757 * 60.00769 * 19 17 15 21 21 H 1.48495 * 109.46824 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47105 * 300.00477 * 19 17 15 23 23 C 1.38211 * 119.99622 * 180.20703 * 2 1 3 24 24 H 1.08997 * 109.46770 * 89.99691 * 1 2 3 25 25 H 1.08995 * 109.47075 * 210.00145 * 1 2 3 26 26 H 1.08997 * 109.46784 * 330.00171 * 1 2 3 27 27 H 1.07993 * 120.00304 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.99697 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.00334 * 179.97438 * 5 4 3 30 30 H 0.96709 * 113.99630 * 60.00135 * 9 7 6 31 31 H 1.09001 * 109.47393 * 60.00436 * 10 7 6 32 32 H 1.08998 * 109.47408 * 300.00082 * 10 7 6 33 33 H 1.00901 * 110.99869 * 56.04956 * 11 10 7 34 34 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 35 35 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 36 36 H 1.08995 * 109.46615 * 299.99641 * 13 12 11 37 37 H 1.08996 * 109.46939 * 60.00272 * 13 12 11 38 38 H 1.08993 * 109.47740 * 299.99810 * 14 13 12 39 39 H 1.09005 * 109.47573 * 59.99976 * 14 13 12 40 40 H 0.97002 * 120.00555 * 179.97438 * 18 17 15 41 41 H 1.07995 * 120.00497 * 0.02590 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0000 -0.0005 6 6 3.5807 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0015 8 1 3.7089 -3.2828 -0.4318 9 8 5.5275 -2.3635 -0.7723 10 6 4.6990 -2.8798 1.4385 11 7 5.4340 -4.1517 1.4389 12 6 5.8012 -4.5471 2.8052 13 6 6.5639 -5.8728 2.7649 14 6 6.9469 -6.2842 4.1879 15 6 7.6976 -7.5903 4.1483 16 1 7.8833 -8.0780 3.2027 17 6 8.1482 -8.1623 5.3192 18 7 7.9225 -7.5683 6.4706 19 14 9.0794 -9.7810 5.2700 20 1 10.3090 -9.6200 4.4530 21 1 9.4510 -10.1803 6.6511 22 1 8.2180 -10.8294 4.6669 23 6 2.1981 -1.1970 -0.0043 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1326 -0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.3517 -0.0001 -0.0014 30 1 6.1327 -1.6845 -0.4437 31 1 3.7888 -2.9856 2.0287 32 1 5.3243 -2.0991 1.8717 33 1 6.2489 -4.0987 0.8462 34 1 6.4337 -3.7778 3.2485 35 1 4.8984 -4.6649 3.4044 36 1 5.9319 -6.6422 2.3216 37 1 7.4668 -5.7545 2.1659 38 1 7.5791 -5.5148 4.6310 39 1 6.0442 -6.4024 4.7874 40 1 8.2392 -7.9708 7.2944 41 1 1.6581 -2.1323 -0.0081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905093652.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:19:55 Heat of formation + Delta-G solvation = -52.512600 kcal Electronic energy + Delta-G solvation = -18685.317861 eV Core-core repulsion = 15756.793115 eV Total energy + Delta-G solvation = -2928.524745 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.05476 -37.73345 -35.72573 -33.40775 -32.98131 -32.01333 -31.02241 -28.02788 -27.18654 -25.67373 -23.23733 -22.39646 -21.99916 -20.70401 -20.01423 -17.55724 -16.46586 -16.24921 -16.17442 -15.50819 -15.12472 -14.54056 -14.29724 -14.19970 -14.14637 -13.79095 -13.38589 -13.18755 -12.63422 -12.44842 -12.44325 -12.05176 -11.90727 -11.60040 -11.41509 -11.37096 -11.10094 -10.79268 -10.58552 -10.54726 -10.23278 -9.66703 -9.32286 -9.09169 -9.01291 -8.85471 -8.31564 -8.17077 -5.96851 -3.98910 1.04199 1.11304 3.36076 3.39836 3.42392 3.43167 4.12079 4.26197 4.48887 4.52374 4.60053 4.75627 4.84264 4.96278 5.04347 5.08979 5.19940 5.28774 5.35560 5.38793 5.48288 5.63659 5.70468 5.75172 5.82744 5.86860 5.96474 6.17713 6.28887 6.33528 6.34520 6.72113 6.74306 6.77749 7.16641 7.31531 7.41238 7.66879 7.71465 7.86526 8.03618 8.47040 9.08157 9.64897 11.14624 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.041321 B = 0.002639 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.453533 B =10608.189637 C =10802.496214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.107 4.107 7 C 0.149 3.851 8 H 0.116 0.884 9 O -0.551 6.551 10 C 0.034 3.966 11 N -0.687 5.687 12 C 0.059 3.941 13 C -0.107 4.107 14 C 0.022 3.978 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.109 4.109 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.370 0.630 31 H 0.080 0.920 32 H 0.029 0.971 33 H 0.344 0.656 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 18.962 -13.690 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.132 4.132 5 C -0.136 4.136 6 C -0.108 4.108 7 C 0.089 3.911 8 H 0.134 0.866 9 O -0.356 6.356 10 C -0.096 4.096 11 N -0.319 5.319 12 C -0.069 4.069 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.217 0.783 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.163 0.837 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.034 18.075 -13.844 26.234 hybrid contribution 1.479 0.302 0.725 1.674 sum -11.555 18.376 -13.119 25.364 Atomic orbital electron populations 1.20807 0.91081 1.02929 1.02387 1.19934 0.96167 0.93095 0.99318 1.21045 0.94287 0.97513 1.01320 1.21091 0.94334 0.97876 0.99855 1.20858 0.99730 0.92087 1.00962 1.20584 0.94515 0.95850 0.99870 1.20931 0.85650 0.93017 0.91468 0.86645 1.86666 1.31619 1.61448 1.55890 1.22582 0.99665 0.91518 0.95876 1.60466 1.29704 1.29377 1.12352 1.22144 0.99136 0.97835 0.87819 1.21621 0.97900 0.94047 1.00907 1.19062 0.96404 0.96074 0.90002 1.21231 1.35274 1.06463 0.92759 0.92686 1.25035 0.96315 0.97618 0.95579 1.69957 1.46816 1.39296 0.97642 0.86647 0.80336 0.84045 0.76910 1.20253 1.21331 1.20205 1.20903 0.93290 0.97911 1.00610 0.91119 0.91330 0.91539 0.86158 0.85989 0.86298 0.78264 0.90181 0.95264 0.83746 0.95872 0.91547 0.92502 0.93603 0.96847 0.96600 0.92994 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.01 36.01 0.36 -0.38 16 2 C -0.09 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 5 C -0.12 -1.09 9.33 -39.58 -0.37 -1.46 16 6 C -0.11 -1.09 5.01 -104.62 -0.52 -1.61 16 7 C 0.15 1.62 3.49 -27.89 -0.10 1.53 16 8 H 0.12 1.33 8.05 -51.93 -0.42 0.91 16 9 O -0.55 -6.15 12.47 -35.23 -0.44 -6.59 16 10 C 0.03 0.41 5.37 -3.82 -0.02 0.39 16 11 N -0.69 -10.36 6.50 -113.78 -0.74 -11.10 16 12 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 13 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -1.06 9.34 -39.58 -0.37 -1.43 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 28 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.12 0.88 6.61 -52.49 -0.35 0.54 16 30 H 0.37 2.96 7.39 45.56 0.34 3.30 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.34 5.05 8.12 -39.29 -0.32 4.73 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -32.06 341.77 -9.65 -41.70 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.20 Total: 2.45 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.13 Total: -21.92 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.00 Total: -37.82 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.44 Total: -6.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.06 -9.65 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905093652.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.809 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds