Wall clock time and date at job start Mon Mar 30 2020 00:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38751 * 120.05870 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.94246 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05809 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.94633 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47486 * 260.00646 * 7 6 5 9 9 C 1.46898 * 110.99881 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47043 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47305 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47012 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00076 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99610 * 180.02562 * 12 11 10 15 15 N 1.31507 * 120.00206 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99639 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46697 * 89.99883 * 16 14 12 18 18 H 1.48495 * 109.46901 * 209.99698 * 16 14 12 19 19 H 1.48501 * 109.47026 * 329.99935 * 16 14 12 20 20 C 1.38246 * 120.11014 * 0.02562 * 6 5 4 21 21 C 1.50704 * 119.97128 * 180.02562 * 20 6 5 22 22 C 1.38162 * 120.05734 * 359.76698 * 20 6 5 23 23 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 24 24 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08002 * 120.02961 * 0.02562 * 4 3 2 27 27 H 1.08007 * 119.96925 * 180.02562 * 5 4 3 28 28 H 1.09004 * 109.47210 * 20.00581 * 7 6 5 29 29 H 1.09000 * 109.47309 * 139.99621 * 7 6 5 30 30 H 1.00903 * 110.99802 * 303.94698 * 8 7 6 31 31 H 1.09001 * 109.47161 * 299.99052 * 9 8 7 32 32 H 1.09000 * 109.47904 * 59.99838 * 9 8 7 33 33 H 1.08995 * 109.47306 * 300.00218 * 10 9 8 34 34 H 1.09002 * 109.47150 * 59.99833 * 10 9 8 35 35 H 1.09004 * 109.47237 * 300.00320 * 11 10 9 36 36 H 1.08996 * 109.47001 * 60.00430 * 11 10 9 37 37 H 0.97002 * 120.00241 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.46973 * 90.00063 * 21 20 6 39 39 H 1.08992 * 109.47226 * 210.00189 * 21 20 6 40 40 H 1.09000 * 109.46823 * 330.00052 * 21 20 6 41 41 H 1.07998 * 120.02953 * 180.25220 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9860 5.0186 -0.0005 8 7 4.4219 5.3461 -1.3646 9 6 5.0952 6.6511 -1.4030 10 6 5.5342 6.9565 -2.8365 11 6 6.2349 8.3161 -2.8766 12 6 6.6668 8.6171 -4.2887 13 1 6.4624 7.9093 -5.0784 14 6 7.3238 9.7957 -4.5722 15 7 7.5732 10.6573 -3.6104 16 14 7.8598 10.1685 -6.3224 17 1 6.7734 10.8937 -7.0288 18 1 9.0823 11.0111 -6.2968 19 1 8.1497 8.8970 -7.0327 20 6 4.0559 2.5172 -0.0011 21 6 5.5607 2.5983 -0.0011 22 6 3.4311 1.2849 0.0038 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2127 2.3204 0.0014 27 1 1.3339 4.5114 0.0008 28 1 3.2907 5.7807 0.3515 29 1 4.8526 4.9848 0.6597 30 1 5.0169 4.6216 -1.7378 31 1 4.4078 7.4248 -1.0606 32 1 5.9696 6.6283 -0.7526 33 1 6.2216 6.1829 -3.1785 34 1 4.6601 6.9794 -3.4872 35 1 5.5471 9.0896 -2.5346 36 1 7.1090 8.2937 -2.2259 37 1 8.0351 11.4866 -3.8099 38 1 5.9236 2.6173 1.0266 39 1 5.9714 1.7294 -0.5153 40 1 5.8756 3.5067 -0.5145 41 1 4.0206 0.3800 0.0075 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921684858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:41 Heat of formation + Delta-G solvation = -53.703298 kcal Electronic energy + Delta-G solvation = -18819.780568 eV Core-core repulsion = 15891.204190 eV Total energy + Delta-G solvation = -2928.576378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20814 -39.20699 -37.39984 -35.45998 -33.62518 -33.29578 -31.42546 -29.12835 -27.89257 -27.46242 -25.60592 -23.80906 -23.11243 -22.01037 -21.34943 -18.66498 -18.49032 -17.57919 -16.95145 -16.65591 -16.54816 -16.24459 -15.61538 -15.32361 -14.98641 -14.81359 -14.46105 -14.25399 -14.17273 -13.80766 -13.39940 -13.15895 -13.05051 -13.00272 -12.73318 -12.60627 -12.49526 -12.27962 -12.10151 -11.79939 -11.68800 -11.50913 -11.36831 -11.08800 -10.54710 -9.73443 -9.41591 -9.00872 -8.19608 -6.30485 0.36208 0.43713 1.40406 1.41920 1.53120 2.37710 2.41526 2.68743 3.13407 3.43147 3.82311 3.86526 3.98535 4.18249 4.23861 4.29936 4.36129 4.40000 4.42421 4.46459 4.60504 4.70277 4.73652 4.75448 4.77337 4.86351 4.98738 5.03075 5.11402 5.18071 5.25265 5.35464 5.43877 5.52820 5.71290 5.76266 5.82252 5.86772 6.05585 6.28082 6.45977 6.46278 6.86405 7.38613 8.92268 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.038805 B = 0.002763 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.381696 B =10130.340458 C =10216.321583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.117 3.883 4 C -0.216 4.216 5 C -0.067 4.067 6 C -0.128 4.128 7 C 0.103 3.897 8 N -0.688 5.688 9 C 0.071 3.929 10 C -0.093 4.093 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.058 0.942 14 C -0.002 4.002 15 N -0.933 5.933 16 Si 0.965 3.035 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.264 1.264 20 C -0.045 4.045 21 C -0.118 4.118 22 C -0.167 4.167 23 H 0.061 0.939 24 H 0.119 0.881 25 H 0.064 0.936 26 H 0.147 0.853 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.341 0.659 31 H 0.064 0.936 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.051 0.949 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 -20.962 10.247 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.072 3.928 4 C -0.235 4.235 5 C -0.085 4.085 6 C -0.129 4.129 7 C -0.025 4.025 8 N -0.320 5.320 9 C -0.058 4.058 10 C -0.131 4.131 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.188 1.188 20 C -0.046 4.046 21 C -0.175 4.175 22 C -0.185 4.185 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.083 0.917 26 H 0.165 0.835 27 H 0.153 0.847 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.105 -20.735 10.102 26.528 hybrid contribution 0.931 0.546 -0.324 1.127 sum -12.174 -20.190 9.777 25.523 Atomic orbital electron populations 1.23324 0.76550 1.05512 1.02173 1.86033 1.23402 1.26831 1.88735 1.19178 0.92565 0.84659 0.96429 1.21407 1.01002 0.91791 1.09294 1.21033 0.93818 0.97813 0.95847 1.19663 0.94000 0.94203 1.05035 1.20791 0.98575 0.93670 0.89443 1.60604 1.45866 1.04091 1.21431 1.21863 0.96153 0.91105 0.96652 1.21375 0.98997 0.97170 0.95514 1.18969 0.94126 0.92641 0.95473 1.21705 1.36987 1.03985 0.95457 0.92340 1.25992 0.95984 0.96119 1.01836 1.70092 1.42703 1.10302 1.34282 0.85443 0.77838 0.78438 0.79310 1.19771 1.20624 1.18784 1.19752 0.96764 0.91617 0.96447 1.20913 0.89949 1.03282 1.03361 1.20415 0.91736 0.98309 1.08053 0.92026 0.86285 0.91691 0.83544 0.84654 0.90235 0.93828 0.83934 0.91731 0.95526 0.93212 0.93069 0.98978 0.98933 0.92757 0.89751 0.89933 0.92028 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.61 10.50 -92.48 -0.97 -7.58 16 3 C 0.12 2.53 6.69 22.51 0.15 2.69 16 4 C -0.22 -4.30 9.04 22.36 0.20 -4.10 16 5 C -0.07 -1.45 9.66 22.25 0.21 -1.23 16 6 C -0.13 -3.01 5.39 -19.85 -0.11 -3.11 16 7 C 0.10 2.54 5.04 85.56 0.43 2.97 16 8 N -0.69 -20.14 6.47 -517.93 -3.35 -23.49 16 9 C 0.07 2.47 5.68 86.30 0.49 2.96 16 10 C -0.09 -3.91 5.41 30.60 0.17 -3.75 16 11 C 0.03 1.37 4.97 29.85 0.15 1.52 16 12 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 15 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 16 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 20 C -0.05 -0.99 5.87 -19.88 -0.12 -1.11 16 21 C -0.12 -2.18 9.22 71.24 0.66 -1.52 16 22 C -0.17 -3.63 9.64 22.37 0.22 -3.42 16 23 H 0.06 0.61 7.66 -2.39 -0.02 0.60 16 24 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 26 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 27 H 0.14 2.58 8.03 -2.91 -0.02 2.56 16 28 H 0.08 1.91 8.00 -2.38 -0.02 1.89 16 29 H 0.04 1.02 7.28 -2.39 -0.02 1.00 16 30 H 0.34 9.56 6.97 -89.69 -0.63 8.94 16 31 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 35 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 40 H 0.06 1.24 5.25 -2.39 -0.01 1.23 16 41 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.41 336.61 2.63 -64.78 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.38 Total: 14.43 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 4.26 Total: -37.82 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -3.06 Total: -80.72 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.97 Total: -7.58 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.41 2.63 -64.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921684858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.081 kcal (2) G-P(sol) polarization free energy of solvation -67.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds