Wall clock time and date at job start Mon Mar 30 2020 00:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47345 * 2 1 4 4 C 1.38231 * 120.00173 * 89.99410 * 3 2 1 5 5 C 1.38232 * 119.99942 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.00068 * 179.97438 * 6 5 4 8 8 N 1.46891 * 109.47049 * 89.99801 * 7 6 5 9 9 C 1.46898 * 111.00071 * 66.05170 * 8 7 6 10 10 C 1.46905 * 110.99898 * 190.00167 * 8 7 6 11 11 C 1.53000 * 109.47123 * 170.00473 * 10 8 7 12 12 H 1.09002 * 109.47398 * 59.99875 * 11 10 8 13 13 O 1.42903 * 109.46726 * 299.99631 * 11 10 8 14 14 C 1.50699 * 109.47083 * 179.97438 * 11 10 8 15 15 H 1.08000 * 119.99792 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99902 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00126 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99745 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47438 * 0.02562 * 18 16 14 20 20 H 1.48491 * 109.47045 * 120.00577 * 18 16 14 21 21 H 1.48501 * 109.46950 * 240.00369 * 18 16 14 22 22 C 1.38232 * 120.00106 * 0.25473 * 6 5 4 23 23 C 1.38233 * 119.99526 * 270.01920 * 3 2 1 24 24 H 1.08994 * 109.47391 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47611 * 300.00963 * 1 2 3 26 26 H 1.09003 * 109.46481 * 60.00545 * 1 2 3 27 27 H 1.08997 * 109.47611 * 239.99037 * 2 1 3 28 28 H 1.09003 * 109.46481 * 119.99454 * 2 1 3 29 29 H 1.08002 * 120.00457 * 359.97438 * 4 3 2 30 30 H 1.08001 * 120.00587 * 180.02562 * 5 4 3 31 31 H 1.09008 * 109.46963 * 329.99932 * 7 6 5 32 32 H 1.08997 * 109.46745 * 210.00459 * 7 6 5 33 33 H 1.09002 * 109.47298 * 183.95531 * 9 8 7 34 34 H 1.09011 * 109.46893 * 303.94641 * 9 8 7 35 35 H 1.08994 * 109.47518 * 63.94659 * 9 8 7 36 36 H 1.08992 * 109.47078 * 50.00160 * 10 8 7 37 37 H 1.09004 * 109.46829 * 289.99807 * 10 8 7 38 38 H 0.96700 * 114.00234 * 300.00043 * 13 11 10 39 39 H 0.96999 * 120.00073 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.00444 * 179.72864 * 22 6 5 41 41 H 1.07995 * 120.00573 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7240 3.3756 1.1970 6 6 2.9546 4.0271 -0.0002 7 6 3.4570 5.4480 -0.0003 8 7 4.9259 5.4479 -0.0001 9 6 5.4524 4.8911 -1.2533 10 6 5.4524 6.7985 0.2380 11 6 6.9613 6.7225 0.4790 12 1 7.4479 6.2920 -0.3962 13 8 7.2207 5.9022 1.6201 14 6 7.5015 8.1081 0.7227 15 1 6.8352 8.9580 0.7067 16 6 8.8463 8.2909 0.9659 17 7 9.6577 7.2560 0.9848 18 14 9.5157 10.0084 1.2686 19 1 8.4059 10.9923 1.1952 20 1 10.1398 10.0662 2.6148 21 1 10.5336 10.3318 0.2369 22 6 2.7187 3.3774 -1.1973 23 6 2.2624 2.0725 -1.1972 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 1.8934 -0.5140 -0.8898 28 1 1.8932 -0.5138 0.8901 29 1 2.0822 1.5636 2.1325 30 1 2.9044 3.8847 2.1323 31 1 3.0935 5.9619 0.8897 32 1 3.0936 5.9617 -0.8903 33 1 6.5398 4.8377 -1.1987 34 1 5.0468 3.8907 -1.4052 35 1 5.1614 5.5313 -2.0860 36 1 4.9658 7.2290 1.1132 37 1 5.2545 7.4242 -0.6324 38 1 6.8172 6.2259 2.4371 39 1 10.6039 7.3847 1.1555 40 1 2.8946 3.8878 -2.1326 41 1 2.0825 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929210399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:25 Heat of formation + Delta-G solvation = -34.496955 kcal Electronic energy + Delta-G solvation = -19507.918735 eV Core-core repulsion = 16580.175207 eV Total energy + Delta-G solvation = -2927.743528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56916 -37.31884 -35.13768 -33.80398 -32.04287 -30.84503 -30.28607 -28.19032 -26.80708 -25.33840 -23.53551 -22.59322 -21.87136 -20.32588 -19.91949 -16.97134 -16.13225 -15.68049 -15.26480 -15.00123 -14.59646 -14.41405 -14.25747 -13.75970 -13.74252 -13.35926 -13.22107 -13.00712 -12.76377 -12.39276 -11.84911 -11.78229 -11.54164 -11.25353 -11.16500 -11.09262 -10.93437 -10.80890 -10.73911 -10.59289 -10.48984 -10.01606 -8.96039 -8.77712 -8.54649 -8.46047 -8.05902 -7.58126 -5.97949 -4.16287 1.42953 1.53230 3.27756 3.35940 3.39058 3.80380 4.38596 4.66863 4.72555 4.78584 5.04516 5.08354 5.09769 5.21134 5.29602 5.40410 5.44817 5.57132 5.68258 5.72301 5.76336 5.85417 5.90160 5.96431 5.98643 6.17443 6.18737 6.20893 6.30257 6.50534 6.53747 6.62569 6.67844 6.80372 6.84966 7.12216 7.56703 7.64979 7.81228 7.91647 8.23463 8.88055 9.49732 9.66457 11.06143 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.050349 B = 0.003431 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.981922 B = 8158.594417 C = 8243.350304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.120 4.120 5 C -0.094 4.094 6 C -0.069 4.069 7 C 0.089 3.911 8 N -0.523 5.523 9 C 0.024 3.976 10 C 0.030 3.970 11 C 0.237 3.763 12 H 0.054 0.946 13 O -0.553 6.553 14 C -0.573 4.573 15 H 0.055 0.945 16 C 0.079 3.921 17 N -0.858 5.858 18 Si 0.888 3.112 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.112 4.112 23 C -0.121 4.121 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.342 0.658 39 H 0.259 0.741 40 H 0.117 0.883 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.845 -10.700 -2.720 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.138 4.138 5 C -0.113 4.113 6 C -0.069 4.069 7 C -0.039 4.039 8 N -0.247 5.247 9 C -0.124 4.124 10 C -0.097 4.097 11 C 0.179 3.821 12 H 0.072 0.928 13 O -0.355 6.355 14 C -0.612 4.612 15 H 0.073 0.927 16 C -0.127 4.127 17 N -0.494 5.494 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.131 4.131 23 C -0.139 4.139 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.185 0.815 39 H 0.069 0.931 40 H 0.135 0.865 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.159 -11.407 -2.774 19.973 hybrid contribution -0.080 1.935 -0.203 1.947 sum -16.239 -9.472 -2.977 19.034 Atomic orbital electron populations 1.21744 0.94981 1.01409 1.02160 1.20514 0.95943 0.92995 1.02650 1.19815 0.99959 0.96019 0.93315 1.20979 1.00513 0.94979 0.97291 1.21023 0.97863 0.94503 0.97878 1.19828 0.97733 0.96325 0.93053 1.21094 0.89807 0.92141 1.00867 1.62039 1.04182 1.24022 1.34447 1.22437 1.01946 0.98712 0.89286 1.23132 1.01022 0.86319 0.99232 1.19322 0.85805 0.90044 0.86942 0.92799 1.86567 1.77695 1.53170 1.18047 1.21698 0.93638 0.93454 1.52401 0.92724 1.25031 0.97016 0.96457 0.94195 1.70096 1.03839 1.29124 1.46319 0.86627 0.79023 0.84851 0.77920 1.19773 1.20863 1.20932 1.21032 0.99591 0.94880 0.97583 1.20912 1.00850 0.94879 0.97281 0.92637 0.92590 0.92669 0.91271 0.91185 0.86431 0.85931 0.90429 0.94870 0.90494 0.92068 0.96677 0.91903 0.95591 0.81529 0.93074 0.86535 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.90 37.16 0.37 -0.75 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.91 16 3 C -0.09 -1.04 5.13 -104.63 -0.54 -1.58 16 4 C -0.12 -1.45 9.70 -39.59 -0.38 -1.84 16 5 C -0.09 -1.28 9.70 -39.58 -0.38 -1.67 16 6 C -0.07 -0.99 4.88 -104.62 -0.51 -1.50 16 7 C 0.09 1.36 5.12 -4.98 -0.03 1.34 16 8 N -0.52 -9.78 4.62 -244.37 -1.13 -10.91 16 9 C 0.02 0.44 8.99 60.06 0.54 0.98 16 10 C 0.03 0.63 4.56 -3.82 -0.02 0.62 16 11 C 0.24 6.08 2.69 -27.88 -0.08 6.00 16 12 H 0.05 1.52 6.55 -51.93 -0.34 1.18 16 13 O -0.55 -14.69 12.60 -35.23 -0.44 -15.13 16 14 C -0.57 -15.85 8.76 -34.44 -0.30 -16.15 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -25.64 12.84 55.43 0.71 -24.92 16 18 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 C -0.11 -1.46 7.92 -39.58 -0.31 -1.78 16 23 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 28 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 31 H 0.08 1.14 7.88 -51.92 -0.41 0.73 16 32 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.08 1.56 6.47 -51.93 -0.34 1.22 16 34 H 0.06 1.00 5.91 -51.92 -0.31 0.69 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 37 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.34 8.16 9.04 45.56 0.41 8.57 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 1.40 8.00 -52.49 -0.42 0.98 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -30.92 336.35 -9.10 -40.01 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.99 Total: 6.55 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.29 Total: -16.91 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.42 Total: -35.83 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.44 Total: -15.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.92 -9.10 -40.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929210399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.517 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds