Wall clock time and date at job start Mon Mar 30 2020 00:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00285 * 2 1 4 4 C 1.38213 * 120.00166 * 180.23340 * 3 2 1 5 5 C 1.38261 * 119.99946 * 359.80759 * 4 3 2 6 6 C 1.38215 * 119.99828 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99803 * 179.78988 * 2 1 3 8 8 C 1.50699 * 120.00271 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46706 * 39.72925 * 8 7 2 10 10 C 1.52996 * 109.47427 * 279.72952 * 8 7 2 11 11 N 1.46903 * 109.47260 * 159.72484 * 8 7 2 12 12 C 1.46900 * 111.00196 * 303.96087 * 11 8 7 13 13 C 1.46891 * 111.00027 * 180.02562 * 11 8 7 14 14 C 1.53005 * 109.47259 * 198.49929 * 13 11 8 15 15 H 1.08997 * 109.46884 * 53.79094 * 14 13 11 16 16 O 1.42896 * 109.46792 * 293.79024 * 14 13 11 17 17 C 1.50701 * 109.47018 * 173.78992 * 14 13 11 18 18 H 1.07998 * 120.00139 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99426 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00277 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99610 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.46920 * 89.99789 * 21 19 17 23 23 H 1.48496 * 109.46940 * 209.99789 * 21 19 17 24 24 H 1.48495 * 109.47173 * 329.99900 * 21 19 17 25 25 H 1.08997 * 109.47072 * 270.21190 * 1 2 3 26 26 H 1.08997 * 109.47172 * 30.21014 * 1 2 3 27 27 H 1.09002 * 109.47125 * 150.20917 * 1 2 3 28 28 H 1.08003 * 119.99550 * 0.06148 * 3 2 1 29 29 H 1.07997 * 119.99745 * 179.83834 * 4 3 2 30 30 H 1.07997 * 120.00022 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.99393 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47168 * 59.99615 * 10 8 7 33 33 H 1.08997 * 109.47135 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.46865 * 300.00148 * 10 8 7 35 35 H 1.09000 * 109.47100 * 52.17072 * 12 11 8 36 36 H 1.08999 * 109.46447 * 292.17542 * 12 11 8 37 37 H 1.08990 * 109.47200 * 172.17674 * 12 11 8 38 38 H 1.09001 * 109.47243 * 318.50100 * 13 11 8 39 39 H 1.09002 * 109.47375 * 78.50063 * 13 11 8 40 40 H 0.96705 * 114.00392 * 299.99375 * 16 14 13 41 41 H 0.97006 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0098 9 1 0.5782 -2.4241 -0.6471 10 6 0.9790 -2.8164 1.4329 11 7 2.3247 -3.5776 -0.4663 12 6 2.8669 -3.2648 -1.7953 13 6 1.6221 -4.8676 -0.4752 14 6 2.6446 -6.0050 -0.5204 15 1 3.3576 -5.8851 0.2952 16 8 3.3389 -5.9718 -1.7689 17 6 1.9334 -7.3257 -0.3759 18 1 0.8597 -7.3514 -0.2627 19 6 2.6537 -8.5014 -0.3882 20 7 3.9612 -8.4701 -0.5266 21 14 1.7722 -10.1387 -0.2098 22 1 1.3943 -10.6463 -1.5532 23 1 2.6725 -11.1158 0.4534 24 1 0.5492 -9.9554 0.6122 25 1 -0.3633 0.0038 1.0276 26 1 -0.3633 0.8881 -0.5171 27 1 -0.3633 -0.8919 -0.5106 28 1 1.6583 2.1326 0.0010 29 1 4.1204 2.1326 -0.0075 30 1 5.3517 -0.0001 -0.0091 31 1 4.1206 -2.1323 -0.0014 32 1 0.3259 -2.0184 1.7861 33 1 0.4336 -3.7601 1.4366 34 1 1.8454 -2.8943 2.0897 35 1 3.3217 -2.2744 -1.7782 36 1 2.0614 -3.2821 -2.5295 37 1 3.6196 -4.0057 -2.0642 38 1 1.0175 -4.9582 0.4272 39 1 0.9770 -4.9240 -1.3520 40 1 2.7653 -6.0731 -2.5408 41 1 4.4680 -9.2973 -0.5348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929326052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:06 Heat of formation + Delta-G solvation = -18.924888 kcal Electronic energy + Delta-G solvation = -20348.955719 eV Core-core repulsion = 17421.887447 eV Total energy + Delta-G solvation = -2927.068273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.90156 -37.39464 -35.11983 -33.04015 -32.11007 -31.24762 -29.66581 -28.44118 -26.85049 -25.22423 -24.11967 -22.70266 -21.49299 -20.26139 -19.51956 -16.92465 -16.42828 -15.76757 -15.16195 -14.65824 -14.56831 -14.33683 -14.17229 -13.82686 -13.56128 -13.32195 -12.93934 -12.55736 -12.33965 -12.31447 -12.15414 -11.80271 -11.64690 -11.25711 -11.19520 -10.97298 -10.86023 -10.79792 -10.70978 -10.67250 -10.17734 -9.90121 -9.00538 -8.55746 -8.54537 -8.42726 -8.14121 -7.53594 -5.98209 -4.16438 1.47497 1.55189 3.28407 3.35700 3.38060 3.88917 4.33361 4.52600 4.85542 4.92932 5.05594 5.24870 5.28394 5.28707 5.45207 5.49282 5.63953 5.64786 5.76915 5.80407 5.93306 6.01643 6.04515 6.12582 6.16020 6.21040 6.29412 6.36155 6.47644 6.51774 6.60441 6.70674 6.77661 6.85423 7.01833 7.17577 7.57888 7.75156 7.79177 8.00668 8.24193 8.87189 9.41264 9.60894 11.05781 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036237 B = 0.004496 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.512872 B = 6226.480043 C = 6643.748601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.125 4.125 5 C -0.133 4.133 6 C -0.090 4.090 7 C -0.071 4.071 8 C 0.114 3.886 9 H 0.043 0.957 10 C -0.141 4.141 11 N -0.528 5.528 12 C 0.007 3.993 13 C 0.028 3.972 14 C 0.239 3.761 15 H 0.064 0.936 16 O -0.560 6.560 17 C -0.573 4.573 18 H 0.053 0.947 19 C 0.081 3.919 20 N -0.858 5.858 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.142 0.858 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.009 0.991 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.021 0.979 40 H 0.340 0.660 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 16.960 0.646 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.143 4.143 5 C -0.151 4.151 6 C -0.108 4.108 7 C -0.071 4.071 8 C 0.005 3.995 9 H 0.060 0.940 10 C -0.199 4.199 11 N -0.252 5.252 12 C -0.140 4.140 13 C -0.099 4.099 14 C 0.181 3.819 15 H 0.081 0.919 16 O -0.362 6.362 17 C -0.611 4.611 18 H 0.072 0.928 19 C -0.125 4.125 20 N -0.493 5.493 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.027 0.973 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.183 0.817 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.391 16.895 1.378 17.287 hybrid contribution -1.674 -0.899 -0.799 2.061 sum -5.065 15.996 0.579 16.788 Atomic orbital electron populations 1.20845 0.91711 1.02559 1.02166 1.19707 0.95778 0.92686 1.00660 1.20882 0.94250 0.97003 1.02498 1.21059 0.94249 0.97864 1.01146 1.21186 0.99805 0.92597 1.01541 1.21327 0.93898 0.98746 0.96812 1.19743 0.94058 0.93670 0.99656 1.20570 0.93215 0.88911 0.96758 0.93971 1.21875 1.01437 1.01254 0.95310 1.62104 1.35442 1.01731 1.25926 1.22910 1.00257 1.02576 0.88272 1.23197 0.97573 0.89358 0.99801 1.19358 0.89664 0.88734 0.84156 0.91873 1.86553 1.38974 1.95073 1.15635 1.21639 0.93745 0.91847 1.53906 0.92827 1.25013 0.94640 0.99017 0.93878 1.70083 1.05437 1.27148 1.46660 0.86699 0.79681 0.83884 0.78245 1.20623 1.21120 1.19876 0.91242 0.91982 0.91336 0.86651 0.86674 0.86350 0.84074 0.92772 0.91647 0.91625 0.92164 0.97267 0.87956 0.90895 0.96097 0.81696 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 8.94 36.01 0.32 -0.89 16 2 C -0.09 -1.12 5.88 -104.62 -0.61 -1.74 16 3 C -0.13 -1.50 9.70 -39.58 -0.38 -1.88 16 4 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 5 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 6 C -0.09 -1.33 7.26 -39.58 -0.29 -1.61 16 7 C -0.07 -1.03 4.39 -104.62 -0.46 -1.49 16 8 C 0.11 1.76 1.73 -68.87 -0.12 1.64 16 9 H 0.04 0.65 6.39 -51.93 -0.33 0.32 16 10 C -0.14 -2.05 8.96 37.16 0.33 -1.71 16 11 N -0.53 -9.56 3.74 -236.29 -0.88 -10.44 16 12 C 0.01 0.13 8.22 60.06 0.49 0.62 16 13 C 0.03 0.57 4.59 -3.83 -0.02 0.55 16 14 C 0.24 5.97 3.04 -27.88 -0.08 5.88 16 15 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 16 O -0.56 -13.98 9.85 -35.23 -0.35 -14.33 16 17 C -0.57 -15.59 8.76 -34.44 -0.30 -15.89 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 20 N -0.86 -25.30 12.84 55.43 0.71 -24.59 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H 0.07 0.66 7.79 -51.93 -0.40 0.26 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.07 0.75 6.12 -51.93 -0.32 0.43 16 28 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.14 2.30 6.49 -52.49 -0.34 1.96 16 32 H 0.05 0.66 7.12 -51.93 -0.37 0.29 16 33 H 0.06 0.98 6.06 -51.93 -0.31 0.66 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.97 4.96 -51.93 -0.26 0.71 16 36 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 37 H 0.10 1.99 5.63 -51.93 -0.29 1.70 16 38 H 0.07 1.46 5.56 -51.93 -0.29 1.17 16 39 H 0.02 0.42 7.93 -51.93 -0.41 0.01 16 40 H 0.34 7.67 9.04 45.56 0.41 8.08 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -29.65 319.93 -8.14 -37.79 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.41 Total: 9.01 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.01 Total: -18.32 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.17 Total: -35.03 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.35 Total: -14.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.65 -8.14 -37.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929326052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.865 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds