Wall clock time and date at job start Mon Mar 30 2020 00:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 120.00285 * 2 1 4 4 C 1.38213 * 120.00166 * 180.23340 * 3 2 1 5 5 C 1.38261 * 119.99946 * 359.80759 * 4 3 2 6 6 C 1.38215 * 119.99828 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99803 * 179.78988 * 2 1 3 8 8 C 1.50699 * 120.00271 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46706 * 39.72925 * 8 7 2 10 10 C 1.52996 * 109.47427 * 279.72952 * 8 7 2 11 11 N 1.46903 * 109.47260 * 159.72484 * 8 7 2 12 12 C 1.46900 * 111.00196 * 303.96087 * 11 8 7 13 13 C 1.46891 * 111.00027 * 180.02562 * 11 8 7 14 14 C 1.53005 * 109.47259 * 198.49929 * 13 11 8 15 15 H 1.08997 * 109.46884 * 53.79094 * 14 13 11 16 16 O 1.42896 * 109.46792 * 293.79024 * 14 13 11 17 17 C 1.50701 * 109.47018 * 173.78992 * 14 13 11 18 18 H 1.07998 * 120.00139 * 359.97438 * 17 14 13 19 19 C 1.37881 * 119.99426 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00277 * 359.97438 * 19 17 14 21 21 Si 1.86807 * 119.99610 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.46920 * 89.99789 * 21 19 17 23 23 H 1.48496 * 109.46940 * 209.99789 * 21 19 17 24 24 H 1.48495 * 109.47173 * 329.99900 * 21 19 17 25 25 H 1.08997 * 109.47072 * 270.21190 * 1 2 3 26 26 H 1.08997 * 109.47172 * 30.21014 * 1 2 3 27 27 H 1.09002 * 109.47125 * 150.20917 * 1 2 3 28 28 H 1.08003 * 119.99550 * 0.06148 * 3 2 1 29 29 H 1.07997 * 119.99745 * 179.83834 * 4 3 2 30 30 H 1.07997 * 120.00022 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.99393 * 180.02562 * 6 5 4 32 32 H 1.09000 * 109.47168 * 59.99615 * 10 8 7 33 33 H 1.08997 * 109.47135 * 179.97438 * 10 8 7 34 34 H 1.09006 * 109.46865 * 300.00148 * 10 8 7 35 35 H 1.09000 * 109.47100 * 52.17072 * 12 11 8 36 36 H 1.08999 * 109.46447 * 292.17542 * 12 11 8 37 37 H 1.08990 * 109.47200 * 172.17674 * 12 11 8 38 38 H 1.09001 * 109.47243 * 318.50100 * 13 11 8 39 39 H 1.09002 * 109.47375 * 78.50063 * 13 11 8 40 40 H 0.96705 * 114.00392 * 299.99375 * 16 14 13 41 41 H 0.97006 * 119.99925 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0057 6 6 3.5806 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4446 -2.5021 0.0098 9 1 0.5782 -2.4241 -0.6471 10 6 0.9790 -2.8164 1.4329 11 7 2.3247 -3.5776 -0.4663 12 6 2.8669 -3.2648 -1.7953 13 6 1.6221 -4.8676 -0.4752 14 6 2.6446 -6.0050 -0.5204 15 1 3.3576 -5.8851 0.2952 16 8 3.3389 -5.9718 -1.7689 17 6 1.9334 -7.3257 -0.3759 18 1 0.8597 -7.3514 -0.2627 19 6 2.6537 -8.5014 -0.3882 20 7 3.9612 -8.4701 -0.5266 21 14 1.7722 -10.1387 -0.2098 22 1 1.3943 -10.6463 -1.5532 23 1 2.6725 -11.1158 0.4534 24 1 0.5492 -9.9554 0.6122 25 1 -0.3633 0.0038 1.0276 26 1 -0.3633 0.8881 -0.5171 27 1 -0.3633 -0.8919 -0.5106 28 1 1.6583 2.1326 0.0010 29 1 4.1204 2.1326 -0.0075 30 1 5.3517 -0.0001 -0.0091 31 1 4.1206 -2.1323 -0.0014 32 1 0.3259 -2.0184 1.7861 33 1 0.4336 -3.7601 1.4366 34 1 1.8454 -2.8943 2.0897 35 1 3.3217 -2.2744 -1.7782 36 1 2.0614 -3.2821 -2.5295 37 1 3.6196 -4.0057 -2.0642 38 1 1.0175 -4.9582 0.4272 39 1 0.9770 -4.9240 -1.3520 40 1 2.7653 -6.0731 -2.5408 41 1 4.4680 -9.2973 -0.5348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929326052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:06 Heat of formation + Delta-G solvation = -37.613623 kcal Electronic energy + Delta-G solvation = -20349.766124 eV Core-core repulsion = 17421.887447 eV Total energy + Delta-G solvation = -2927.878677 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00204 -38.87374 -36.84524 -34.29024 -34.00675 -32.48245 -30.92106 -30.11658 -27.79043 -27.01950 -25.48439 -24.05273 -22.76935 -21.75097 -20.76694 -18.94574 -17.50980 -17.06502 -16.62956 -16.38231 -16.26327 -15.91328 -15.32784 -15.00696 -14.97150 -14.55564 -14.12641 -14.09040 -13.82337 -13.51552 -13.10754 -13.08456 -12.98830 -12.87261 -12.77668 -12.59749 -12.40692 -12.36418 -12.08922 -11.93477 -11.75500 -11.32697 -11.01043 -10.69234 -10.05586 -9.53452 -9.42000 -9.05399 -8.11018 -6.37087 0.50006 0.56059 1.41240 1.41919 1.52704 2.39554 2.90097 3.08106 3.14704 3.75944 4.04032 4.12335 4.21491 4.24446 4.30391 4.35423 4.42482 4.47380 4.51867 4.68644 4.69952 4.79043 4.82991 4.87324 4.92539 4.95416 5.03296 5.14235 5.21617 5.28728 5.35433 5.40844 5.63558 5.65152 5.69809 5.78360 5.80421 6.05238 6.20090 6.32605 6.38481 6.76447 7.35463 7.57125 8.93176 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036237 B = 0.004496 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.512872 B = 6226.480043 C = 6643.748601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.128 4.128 4 C -0.122 4.122 5 C -0.141 4.141 6 C -0.111 4.111 7 C -0.088 4.088 8 C 0.117 3.883 9 H 0.048 0.952 10 C -0.137 4.137 11 N -0.539 5.539 12 C 0.018 3.982 13 C 0.046 3.954 14 C 0.242 3.758 15 H 0.020 0.980 16 O -0.571 6.571 17 C -0.587 4.587 18 H 0.059 0.941 19 C 0.027 3.973 20 N -0.899 5.899 21 Si 0.959 3.041 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.264 1.264 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.130 0.870 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.014 0.986 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.024 0.976 40 H 0.350 0.650 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 18.737 0.677 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.130 4.130 7 C -0.088 4.088 8 C 0.009 3.991 9 H 0.066 0.934 10 C -0.194 4.194 11 N -0.264 5.264 12 C -0.129 4.129 13 C -0.082 4.082 14 C 0.184 3.816 15 H 0.038 0.962 16 O -0.374 6.374 17 C -0.625 4.625 18 H 0.077 0.923 19 C -0.175 4.175 20 N -0.536 5.536 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.189 1.189 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.162 0.838 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.194 0.806 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.169 18.686 1.407 19.439 hybrid contribution -1.081 -1.334 -0.803 1.895 sum -6.250 17.352 0.604 18.453 Atomic orbital electron populations 1.20887 0.90015 1.03212 1.03065 1.19989 0.97115 0.92281 0.99921 1.21267 0.94464 0.97730 1.01069 1.21417 0.94625 0.98367 0.99620 1.21377 1.00624 0.92496 1.01401 1.21201 0.94294 0.98581 0.98892 1.19699 0.93917 0.93828 1.01391 1.20589 0.92945 0.88503 0.97024 0.93423 1.21846 1.01118 1.01845 0.94624 1.61967 1.36231 1.01764 1.26402 1.22735 0.99704 1.02397 0.88096 1.22793 0.96064 0.89227 1.00083 1.19136 0.89320 0.90153 0.83000 0.96201 1.86511 1.39618 1.95272 1.16022 1.22040 0.94128 0.92980 1.53334 0.92280 1.25879 0.95265 1.02935 0.93448 1.70229 1.07159 1.28121 1.48119 0.85573 0.78573 0.79023 0.78472 1.19862 1.21003 1.18856 0.90124 0.90010 0.92022 0.83759 0.83837 0.85159 0.86725 0.90188 0.92370 0.93159 0.90887 0.96758 0.90441 0.90517 0.95749 0.80586 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 8.94 71.24 0.64 -1.42 16 2 C -0.09 -2.14 5.88 -19.87 -0.12 -2.25 16 3 C -0.13 -2.54 9.70 22.27 0.22 -2.33 16 4 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 5 C -0.14 -3.45 10.05 22.27 0.22 -3.23 16 6 C -0.11 -3.30 7.26 22.27 0.16 -3.14 16 7 C -0.09 -2.48 4.39 -19.87 -0.09 -2.57 16 8 C 0.12 3.57 1.73 44.17 0.08 3.64 16 9 H 0.05 1.41 6.39 -2.39 -0.02 1.40 16 10 C -0.14 -3.89 8.96 71.98 0.64 -3.25 16 11 N -0.54 -19.98 3.74 -901.49 -3.37 -23.35 16 12 C 0.02 0.65 8.22 127.69 1.05 1.70 16 13 C 0.05 1.92 4.59 86.31 0.40 2.31 16 14 C 0.24 12.54 3.04 29.85 0.09 12.63 16 15 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 16 O -0.57 -29.56 9.85 -148.98 -1.47 -31.02 16 17 C -0.59 -32.37 8.76 25.60 0.22 -32.14 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 19 C 0.03 1.53 5.40 84.66 0.46 1.98 16 20 N -0.90 -54.36 12.84 21.45 0.28 -54.09 16 21 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 25 H 0.08 1.26 7.79 -2.39 -0.02 1.24 16 26 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 27 H 0.06 1.19 6.12 -2.39 -0.01 1.17 16 28 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 30 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.11 3.94 6.49 -2.91 -0.02 3.93 16 32 H 0.08 1.82 7.12 -2.39 -0.02 1.80 16 33 H 0.06 1.71 6.06 -2.39 -0.01 1.70 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 2.41 4.96 -2.39 -0.01 2.39 16 36 H 0.01 0.48 8.01 -2.39 -0.02 0.46 16 37 H 0.08 3.15 5.63 -2.39 -0.01 3.13 16 38 H 0.08 3.11 5.56 -2.39 -0.01 3.10 16 39 H 0.02 0.99 7.93 -2.39 -0.02 0.97 16 40 H 0.35 16.23 9.04 -74.05 -0.67 15.56 16 41 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 Total: -1.00 -64.70 319.93 2.02 -62.68 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.35 Total: 30.59 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.20 Total: -30.32 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.09 Total: -77.44 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.47 Total: -31.02 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -64.70 2.02 -62.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929326052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.065 kcal (2) G-P(sol) polarization free energy of solvation -64.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds