Wall clock time and date at job start Mon Mar 30 2020 00:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53780 * 113.61623 * 2 1 4 4 C 1.53777 * 87.08419 * 219.93973 * 3 2 1 5 5 C 1.52994 * 113.61903 * 139.98135 * 4 3 2 6 6 N 1.46896 * 109.47303 * 176.52670 * 5 4 3 7 7 C 1.46898 * 111.00141 * 169.99989 * 6 5 4 8 8 C 1.50703 * 109.47312 * 291.50948 * 7 6 5 9 9 H 1.08006 * 119.99513 * 355.52819 * 8 7 6 10 10 C 1.37876 * 120.00082 * 175.51989 * 8 7 6 11 11 N 1.31516 * 119.99832 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00198 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47063 * 89.99577 * 12 10 8 14 14 H 1.48497 * 109.47299 * 209.99428 * 12 10 8 15 15 H 1.48504 * 109.47381 * 329.99787 * 12 10 8 16 16 C 1.46897 * 111.00235 * 293.95149 * 6 5 4 17 17 C 1.50705 * 109.47377 * 163.45885 * 16 6 5 18 18 C 1.34504 * 125.78671 * 95.56055 * 17 16 6 19 19 C 1.41387 * 106.84056 * 179.97438 * 18 17 16 20 20 C 1.34515 * 106.84042 * 0.02562 * 19 18 17 21 21 O 1.34300 * 125.78794 * 275.53477 * 17 16 6 22 22 C 1.53782 * 87.17393 * 25.38612 * 4 3 2 23 23 H 1.09001 * 109.47586 * 60.00276 * 1 2 3 24 24 H 1.09005 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47416 * 299.99712 * 1 2 3 26 26 H 1.08999 * 112.85079 * 131.19935 * 2 1 3 27 27 H 1.08997 * 113.61706 * 105.38117 * 3 2 1 28 28 H 1.09010 * 113.61234 * 334.48327 * 3 2 1 29 29 H 1.09006 * 113.61259 * 270.80052 * 4 3 2 30 30 H 1.09005 * 109.47185 * 56.52396 * 5 4 3 31 31 H 1.08994 * 109.47297 * 296.52839 * 5 4 3 32 32 H 1.09008 * 109.47307 * 51.51019 * 7 6 5 33 33 H 1.09006 * 109.47292 * 171.51011 * 7 6 5 34 34 H 0.96993 * 120.00258 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.47055 * 43.46268 * 16 6 5 36 36 H 1.08999 * 109.47532 * 283.46482 * 16 6 5 37 37 H 1.08002 * 126.58310 * 0.24934 * 18 17 16 38 38 H 1.07996 * 126.57976 * 179.97438 * 19 18 17 39 39 H 1.07997 * 125.79214 * 179.97438 * 20 19 18 40 40 H 1.09006 * 113.60746 * 89.16047 * 22 4 3 41 41 H 1.09001 * 113.61601 * 220.06097 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8656 -0.9859 5 6 3.5488 1.8464 -2.1051 6 7 4.6112 1.2717 -2.9410 7 6 4.8148 2.0706 -4.1568 8 6 3.6118 1.9349 -5.0544 9 1 2.8114 1.2612 -4.7863 10 6 3.5331 2.6710 -6.2175 11 7 2.4834 2.5522 -7.0010 12 14 4.9177 3.8358 -6.6814 13 1 5.9209 3.1104 -7.5016 14 1 4.3676 4.9722 -7.4631 15 1 5.5655 4.3507 -5.4483 16 6 5.8627 1.1378 -2.1835 17 6 6.7906 0.1972 -2.9084 18 6 7.7686 0.5571 -3.7587 19 6 8.3846 -0.6355 -4.2029 20 6 7.7457 -1.6529 -3.5977 21 8 6.7815 -1.1425 -2.8144 22 6 2.1498 -0.1863 -1.3969 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.9532 -0.6616 0.7558 27 1 2.5636 1.7030 0.9629 28 1 1.4950 2.1702 -0.4303 29 1 4.0724 0.4419 -0.4997 30 1 3.8956 2.7838 -1.6702 31 1 2.6667 2.0343 -2.7171 32 1 4.9493 3.1177 -3.8853 33 1 5.7015 1.7145 -4.6814 34 1 2.4281 3.0697 -7.8195 35 1 5.6462 0.7417 -1.1913 36 1 6.3367 2.1148 -2.0891 37 1 8.0354 1.5640 -4.0438 38 1 9.2092 -0.7145 -4.8957 39 1 7.9702 -2.7021 -3.7207 40 1 1.4999 0.1379 -2.2097 41 1 2.5706 -1.1785 -1.5601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929774022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:33 Heat of formation + Delta-G solvation = 35.040764 kcal Electronic energy + Delta-G solvation = -20221.972809 eV Core-core repulsion = 17297.244662 eV Total energy + Delta-G solvation = -2924.728147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11955 -39.09254 -36.48729 -32.62913 -32.48745 -30.69724 -29.81768 -27.77233 -26.00611 -25.29183 -23.93412 -21.46844 -21.04230 -20.37487 -19.52428 -19.02170 -17.01817 -16.76204 -15.75836 -15.43387 -14.86593 -14.43370 -14.35123 -13.73081 -13.37982 -13.25566 -13.00751 -12.84137 -12.45783 -12.38016 -12.25048 -12.08274 -11.94030 -11.68349 -11.13019 -11.01900 -10.74297 -10.59375 -10.40785 -10.05271 -9.88706 -9.75168 -9.61106 -9.50397 -9.26040 -8.54646 -8.07846 -7.40430 -6.03544 -4.00050 2.13644 2.99726 3.29064 3.36003 3.37055 3.41542 4.42966 4.64875 4.85844 4.97221 5.07033 5.11981 5.26749 5.29865 5.39261 5.46154 5.57999 5.61746 5.72403 5.80711 5.87292 5.89947 6.03635 6.04944 6.13648 6.17008 6.25759 6.28263 6.29830 6.46515 6.49235 6.59711 6.71561 6.84690 6.88534 6.93381 7.01579 7.54578 7.62248 7.87678 8.01307 8.66639 9.06049 9.58523 11.09634 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.008003 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.336088 B = 3497.976103 C = 5341.626625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C -0.132 4.132 4 C -0.107 4.107 5 C 0.075 3.925 6 N -0.520 5.520 7 C 0.156 3.844 8 C -0.504 4.504 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.900 5.900 12 Si 0.871 3.129 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.122 3.878 17 C 0.023 3.977 18 C -0.216 4.216 19 C -0.212 4.212 20 C -0.053 4.053 21 O -0.169 6.169 22 C -0.116 4.116 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.021 0.979 31 H 0.094 0.906 32 H -0.010 1.010 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.197 0.803 40 H 0.085 0.915 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 -4.521 12.836 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.170 4.170 4 C -0.126 4.126 5 C -0.053 4.053 6 N -0.244 5.244 7 C 0.030 3.970 8 C -0.542 4.542 9 H 0.099 0.901 10 C -0.132 4.132 11 N -0.540 5.540 12 Si 0.698 3.302 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.006 4.006 17 C -0.028 4.028 18 C -0.236 4.236 19 C -0.232 4.232 20 C -0.121 4.121 21 O -0.064 6.064 22 C -0.154 4.154 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.113 0.887 32 H 0.008 0.992 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.213 0.787 40 H 0.104 0.896 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.850 -5.072 12.694 14.505 hybrid contribution 1.253 1.467 -0.543 2.004 sum 6.103 -3.605 12.152 14.068 Atomic orbital electron populations 1.21713 0.95288 1.01258 1.01548 1.22523 0.95203 0.97471 0.98701 1.23014 0.98385 0.96702 0.98884 1.22561 0.96677 0.97328 0.96030 1.22042 0.96401 0.93524 0.93323 1.61883 1.03287 1.53116 1.06128 1.20305 0.98746 0.90101 0.87830 1.20998 1.04074 1.24726 1.04443 0.90060 1.24874 0.95479 0.96699 0.96197 1.69888 1.28795 1.41925 1.13366 0.86927 0.83096 0.81248 0.78919 1.20147 1.21235 1.19262 1.20546 0.89996 0.93913 0.96132 1.22370 0.98275 0.80897 1.01231 1.21534 1.00146 0.99673 1.02244 1.21726 1.04026 0.92497 1.04903 1.23866 0.91888 0.99262 0.97121 1.84006 1.46773 1.20923 1.54702 1.22968 0.97521 0.99185 0.95705 0.92355 0.93065 0.93139 0.90081 0.92279 0.90019 0.89925 0.96078 0.88738 0.99237 0.95210 0.92732 0.89792 0.92568 0.84124 0.84023 0.78674 0.89645 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.71 37.15 0.36 -1.25 16 2 C -0.12 -1.51 4.36 -89.72 -0.39 -1.90 16 3 C -0.13 -1.70 7.20 -25.92 -0.19 -1.89 16 4 C -0.11 -1.62 3.67 -89.81 -0.33 -1.95 16 5 C 0.07 1.38 4.64 -3.83 -0.02 1.36 16 6 N -0.52 -10.73 4.42 -237.51 -1.05 -11.78 16 7 C 0.16 3.78 3.65 -4.98 -0.02 3.76 16 8 C -0.50 -14.29 8.86 -34.44 -0.31 -14.60 16 9 H 0.08 2.51 7.76 -52.48 -0.41 2.11 16 10 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 11 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 12 Si 0.87 21.64 27.56 -169.99 -4.68 16.95 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.27 -6.38 6.42 56.52 0.36 -6.02 16 16 C 0.12 2.12 5.38 -4.97 -0.03 2.09 16 17 C 0.02 0.42 6.30 -35.63 -0.22 0.20 16 18 C -0.22 -3.77 9.64 -39.70 -0.38 -4.15 16 19 C -0.21 -3.27 10.91 -39.70 -0.43 -3.70 16 20 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 21 O -0.17 -2.98 10.65 5.71 0.06 -2.92 16 22 C -0.12 -1.78 7.20 -25.83 -0.19 -1.97 16 23 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.08 8.06 -51.92 -0.42 0.66 16 29 H 0.08 1.20 6.15 -51.93 -0.32 0.88 16 30 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.09 1.99 6.66 -51.93 -0.35 1.65 16 32 H -0.01 -0.24 6.84 -51.92 -0.36 -0.60 16 33 H 0.03 0.74 6.00 -51.93 -0.31 0.43 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.28 5.88 -51.92 -0.31 0.97 16 36 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 37 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 38 H 0.14 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.20 2.02 8.06 -52.49 -0.42 1.59 16 40 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -31.18 328.72 -8.50 -39.68 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.67 Total: 2.51 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.88 Total: -22.53 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.28 Total: -38.64 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.06 Total: -2.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.68 Total: 16.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.18 -8.50 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.718 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds