Wall clock time and date at job start Mon Mar 30 2020 00:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53780 * 113.61623 * 2 1 4 4 C 1.53777 * 87.08419 * 219.93973 * 3 2 1 5 5 C 1.52994 * 113.61903 * 139.98135 * 4 3 2 6 6 N 1.46896 * 109.47303 * 176.52670 * 5 4 3 7 7 C 1.46898 * 111.00141 * 169.99989 * 6 5 4 8 8 C 1.50703 * 109.47312 * 291.50948 * 7 6 5 9 9 H 1.08006 * 119.99513 * 355.52819 * 8 7 6 10 10 C 1.37876 * 120.00082 * 175.51989 * 8 7 6 11 11 N 1.31516 * 119.99832 * 179.97438 * 10 8 7 12 12 Si 1.86792 * 120.00198 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47063 * 89.99577 * 12 10 8 14 14 H 1.48497 * 109.47299 * 209.99428 * 12 10 8 15 15 H 1.48504 * 109.47381 * 329.99787 * 12 10 8 16 16 C 1.46897 * 111.00235 * 293.95149 * 6 5 4 17 17 C 1.50705 * 109.47377 * 163.45885 * 16 6 5 18 18 C 1.34504 * 125.78671 * 95.56055 * 17 16 6 19 19 C 1.41387 * 106.84056 * 179.97438 * 18 17 16 20 20 C 1.34515 * 106.84042 * 0.02562 * 19 18 17 21 21 O 1.34300 * 125.78794 * 275.53477 * 17 16 6 22 22 C 1.53782 * 87.17393 * 25.38612 * 4 3 2 23 23 H 1.09001 * 109.47586 * 60.00276 * 1 2 3 24 24 H 1.09005 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47416 * 299.99712 * 1 2 3 26 26 H 1.08999 * 112.85079 * 131.19935 * 2 1 3 27 27 H 1.08997 * 113.61706 * 105.38117 * 3 2 1 28 28 H 1.09010 * 113.61234 * 334.48327 * 3 2 1 29 29 H 1.09006 * 113.61259 * 270.80052 * 4 3 2 30 30 H 1.09005 * 109.47185 * 56.52396 * 5 4 3 31 31 H 1.08994 * 109.47297 * 296.52839 * 5 4 3 32 32 H 1.09008 * 109.47307 * 51.51019 * 7 6 5 33 33 H 1.09006 * 109.47292 * 171.51011 * 7 6 5 34 34 H 0.96993 * 120.00258 * 180.02562 * 11 10 8 35 35 H 1.09010 * 109.47055 * 43.46268 * 16 6 5 36 36 H 1.08999 * 109.47532 * 283.46482 * 16 6 5 37 37 H 1.08002 * 126.58310 * 0.24934 * 18 17 16 38 38 H 1.07996 * 126.57976 * 179.97438 * 19 18 17 39 39 H 1.07997 * 125.79214 * 179.97438 * 20 19 18 40 40 H 1.09006 * 113.60746 * 89.16047 * 22 4 3 41 41 H 1.09001 * 113.61601 * 220.06097 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8656 -0.9859 5 6 3.5488 1.8464 -2.1051 6 7 4.6112 1.2717 -2.9410 7 6 4.8148 2.0706 -4.1568 8 6 3.6118 1.9349 -5.0544 9 1 2.8114 1.2612 -4.7863 10 6 3.5331 2.6710 -6.2175 11 7 2.4834 2.5522 -7.0010 12 14 4.9177 3.8358 -6.6814 13 1 5.9209 3.1104 -7.5016 14 1 4.3676 4.9722 -7.4631 15 1 5.5655 4.3507 -5.4483 16 6 5.8627 1.1378 -2.1835 17 6 6.7906 0.1972 -2.9084 18 6 7.7686 0.5571 -3.7587 19 6 8.3846 -0.6355 -4.2029 20 6 7.7457 -1.6529 -3.5977 21 8 6.7815 -1.1425 -2.8144 22 6 2.1498 -0.1863 -1.3969 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.9532 -0.6616 0.7558 27 1 2.5636 1.7030 0.9629 28 1 1.4950 2.1702 -0.4303 29 1 4.0724 0.4419 -0.4997 30 1 3.8956 2.7838 -1.6702 31 1 2.6667 2.0343 -2.7171 32 1 4.9493 3.1177 -3.8853 33 1 5.7015 1.7145 -4.6814 34 1 2.4281 3.0697 -7.8195 35 1 5.6462 0.7417 -1.1913 36 1 6.3367 2.1148 -2.0891 37 1 8.0354 1.5640 -4.0438 38 1 9.2092 -0.7145 -4.8957 39 1 7.9702 -2.7021 -3.7207 40 1 1.4999 0.1379 -2.2097 41 1 2.5706 -1.1785 -1.5601 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929774022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:32 Heat of formation + Delta-G solvation = 16.232495 kcal Electronic energy + Delta-G solvation = -20222.788396 eV Core-core repulsion = 17297.244662 eV Total energy + Delta-G solvation = -2925.543734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.37202 -40.32795 -38.01089 -34.71217 -33.83451 -31.92823 -31.32328 -29.43554 -27.30255 -26.45388 -25.61615 -22.94015 -22.49027 -21.66285 -20.90680 -20.19978 -19.01098 -18.17374 -17.10635 -16.75782 -16.47331 -15.95705 -15.75796 -15.34092 -14.87846 -14.47926 -14.42482 -14.19231 -13.98717 -13.75135 -13.59887 -13.46270 -13.25414 -12.95249 -12.84516 -12.40248 -12.37028 -12.16360 -11.88873 -11.67257 -11.49457 -11.25141 -10.90937 -10.88376 -10.79062 -10.69595 -9.35245 -9.00942 -8.28570 -6.30664 0.87708 1.31736 1.32799 1.42735 1.75947 2.22215 2.32514 3.04931 3.20386 3.74410 3.82712 3.90691 3.91628 4.06163 4.18550 4.21975 4.37923 4.39775 4.50228 4.60287 4.70283 4.73993 4.85075 4.93774 4.96669 4.97590 5.00690 5.02396 5.04373 5.07655 5.21126 5.24953 5.28272 5.36730 5.54155 5.56612 5.67450 5.77638 5.97001 6.30008 6.37665 6.62014 6.75176 7.32173 8.88229 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.011490 B = 0.008003 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.336088 B = 3497.976103 C = 5341.626625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.123 4.123 4 C -0.104 4.104 5 C 0.079 3.921 6 N -0.538 5.538 7 C 0.170 3.830 8 C -0.509 4.509 9 H 0.035 0.965 10 C 0.009 3.991 11 N -0.948 5.948 12 Si 0.941 3.059 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.248 1.248 16 C 0.125 3.875 17 C -0.006 4.006 18 C -0.229 4.229 19 C -0.227 4.227 20 C -0.047 4.047 21 O -0.186 6.186 22 C -0.128 4.128 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.032 0.968 31 H 0.054 0.946 32 H -0.009 1.009 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.238 0.762 40 H 0.054 0.946 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.336 -4.576 14.592 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.161 4.161 4 C -0.122 4.122 5 C -0.049 4.049 6 N -0.262 5.262 7 C 0.043 3.957 8 C -0.547 4.547 9 H 0.054 0.946 10 C -0.188 4.188 11 N -0.589 5.589 12 Si 0.764 3.236 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.172 1.172 16 C -0.002 4.002 17 C -0.056 4.056 18 C -0.249 4.249 19 C -0.246 4.246 20 C -0.114 4.114 21 O -0.082 6.082 22 C -0.165 4.165 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.009 0.991 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.185 0.815 39 H 0.254 0.746 40 H 0.072 0.928 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.897 -5.131 14.479 16.838 hybrid contribution 0.584 1.363 -1.107 1.851 sum 7.480 -3.768 13.371 15.778 Atomic orbital electron populations 1.21708 0.94558 1.01882 1.01639 1.22486 0.95833 0.97390 0.96685 1.22968 0.97225 0.96732 0.99148 1.22571 0.97569 0.96593 0.95476 1.21975 0.94338 0.95155 0.93397 1.61748 1.05556 1.52662 1.06203 1.19987 0.96248 0.90593 0.88837 1.21207 1.04468 1.23586 1.05438 0.94624 1.25794 0.98260 0.98695 0.96069 1.70048 1.31238 1.43480 1.14134 0.85807 0.79612 0.78844 0.79299 1.19353 1.20616 1.17216 1.20604 0.88335 0.94757 0.96540 1.22497 0.99195 0.81350 1.02587 1.21830 1.00302 1.00681 1.02068 1.22096 1.04971 0.91836 1.05666 1.24760 0.90226 1.01085 0.95306 1.83994 1.47846 1.20841 1.55557 1.22951 0.97906 0.98761 0.96927 0.94032 0.92239 0.91254 0.88009 0.89676 0.90884 0.88412 0.94954 0.92755 0.99127 0.95453 0.92532 0.87564 0.91287 0.83839 0.81526 0.74568 0.92754 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.71 71.98 0.70 -2.36 16 2 C -0.11 -2.48 4.36 -10.21 -0.04 -2.52 16 3 C -0.12 -2.96 7.20 31.12 0.22 -2.73 16 4 C -0.10 -3.06 3.67 -10.27 -0.04 -3.10 16 5 C 0.08 2.95 4.64 86.30 0.40 3.35 16 6 N -0.54 -22.37 4.42 -905.35 -4.00 -26.37 16 7 C 0.17 8.31 3.65 85.56 0.31 8.62 16 8 C -0.51 -30.04 8.86 25.60 0.23 -29.82 16 9 H 0.04 2.36 7.76 -2.91 -0.02 2.34 16 10 C 0.01 0.53 5.47 84.65 0.46 0.99 16 11 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 12 Si 0.94 44.84 27.56 68.60 1.89 46.73 16 13 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 15 H -0.25 -10.98 6.42 99.48 0.64 -10.34 16 16 C 0.12 4.17 5.38 85.56 0.46 4.63 16 17 C -0.01 -0.19 6.30 24.83 0.16 -0.04 16 18 C -0.23 -7.65 9.64 22.19 0.21 -7.44 16 19 C -0.23 -6.47 10.91 22.19 0.24 -6.23 16 20 C -0.05 -1.26 12.09 66.97 0.81 -0.45 16 21 O -0.19 -6.32 10.65 -2.50 -0.03 -6.34 16 22 C -0.13 -4.00 7.20 31.18 0.22 -3.78 16 23 H 0.04 1.03 7.96 -2.39 -0.02 1.01 16 24 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.89 8.06 -2.38 -0.02 1.87 16 29 H 0.10 2.62 6.15 -2.38 -0.01 2.61 16 30 H 0.03 1.12 8.12 -2.38 -0.02 1.10 16 31 H 0.05 2.45 6.66 -2.39 -0.02 2.44 16 32 H -0.01 -0.43 6.84 -2.38 -0.02 -0.44 16 33 H 0.03 1.35 6.00 -2.38 -0.01 1.34 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.11 3.01 5.88 -2.38 -0.01 3.00 16 36 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 37 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.24 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.05 2.02 7.75 -2.38 -0.02 2.00 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -70.23 328.72 3.43 -66.79 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.92 Total: 20.04 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 4.35 Total: -40.87 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -3.70 Total: -86.35 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.03 Total: -6.34 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.89 Total: 46.73 kcal Total: -70.23 3.43 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929774022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.026 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds