Wall clock time and date at job start Mon Mar 30 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 116.99694 * 2 1 4 4 C 1.38755 * 120.05875 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94331 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05375 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11625 * 0.04238 * 6 5 4 8 8 C 1.50695 * 119.97464 * 179.97438 * 7 6 5 9 9 N 1.46900 * 109.47464 * 259.97622 * 8 7 6 10 10 C 1.46905 * 110.99695 * 66.04567 * 9 8 7 11 11 C 1.46890 * 111.00496 * 189.99613 * 9 8 7 12 12 H 1.09001 * 109.47471 * 300.00493 * 11 9 8 13 13 C 1.53004 * 109.46717 * 60.00149 * 11 9 8 14 14 C 1.50704 * 109.47677 * 179.97438 * 11 9 8 15 15 H 1.08003 * 119.99428 * 0.02562 * 14 11 9 16 16 C 1.37873 * 120.00132 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00385 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99862 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47324 * 89.99908 * 18 16 14 20 20 H 1.48494 * 109.47144 * 210.00434 * 18 16 14 21 21 H 1.48506 * 109.47046 * 330.00320 * 18 16 14 22 22 C 1.38166 * 120.05257 * 359.95507 * 7 6 5 23 23 C 1.50705 * 120.02903 * 180.29451 * 22 7 6 24 24 H 1.08998 * 109.47042 * 60.00021 * 1 2 3 25 25 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47292 * 300.00273 * 1 2 3 27 27 H 1.07995 * 120.02502 * 0.04490 * 4 3 2 28 28 H 1.07992 * 119.97061 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.94328 * 180.02562 * 6 5 4 30 30 H 1.09005 * 109.47232 * 19.97717 * 8 7 6 31 31 H 1.09002 * 109.46967 * 139.97761 * 8 7 6 32 32 H 1.09005 * 109.47084 * 59.99925 * 10 9 8 33 33 H 1.08995 * 109.47450 * 180.02562 * 10 9 8 34 34 H 1.08998 * 109.47292 * 300.00424 * 10 9 8 35 35 H 1.08998 * 109.47642 * 300.00355 * 13 11 9 36 36 H 1.08997 * 109.47069 * 60.00415 * 13 11 9 37 37 H 1.09006 * 109.47070 * 179.97438 * 13 11 9 38 38 H 0.96991 * 120.00404 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.47390 * 269.73257 * 23 22 7 40 40 H 1.09000 * 109.46441 * 29.72839 * 23 22 7 41 41 H 1.09005 * 109.47010 * 149.72297 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 4.0560 2.5171 -0.0003 8 6 5.5608 2.5982 -0.0003 9 7 6.0628 2.3836 -1.3641 10 6 5.6538 3.4786 -2.2540 11 6 7.5225 2.2194 -1.3681 12 1 7.9901 3.1157 -0.9606 13 6 7.9020 1.0110 -0.5099 14 6 7.9997 2.0013 -2.7809 15 1 7.2896 1.9865 -3.5944 16 6 9.3428 1.8205 -3.0346 17 7 10.2075 1.8380 -2.0439 18 14 9.9344 1.5509 -4.7859 19 1 10.2468 2.8615 -5.4102 20 1 11.1553 0.7058 -4.7713 21 1 8.8710 0.8709 -5.5684 22 6 3.4311 1.2848 0.0002 23 6 4.2537 0.0221 0.0071 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2128 2.3203 -0.0002 28 1 1.3340 4.5113 -0.0019 29 1 3.7922 4.6380 -0.0005 30 1 5.8717 3.5822 0.3506 31 1 5.9659 1.8319 0.6607 32 1 6.0537 4.4205 -1.8785 33 1 6.0382 3.2944 -3.2571 34 1 4.5657 3.5332 -2.2866 35 1 7.5569 1.1681 0.5120 36 1 7.4345 0.1147 -0.9174 37 1 8.9852 0.8888 -0.5132 38 1 11.1522 1.7105 -2.2224 39 1 4.4524 -0.2877 -1.0188 40 1 5.1975 0.2062 0.5204 41 1 3.7061 -0.7654 0.5250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929830142.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:02 Heat of formation + Delta-G solvation = -7.341940 kcal Electronic energy + Delta-G solvation = -20346.181890 eV Core-core repulsion = 17419.615892 eV Total energy + Delta-G solvation = -2926.565999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15958 -37.99425 -36.31478 -33.09201 -32.37041 -30.52509 -28.94392 -27.55267 -27.01126 -26.08052 -24.54108 -23.19679 -21.52895 -20.50321 -19.24624 -17.48496 -16.32532 -16.16506 -15.73423 -15.46163 -15.16609 -14.23530 -14.04563 -13.90520 -13.46166 -13.08679 -12.95090 -12.50379 -12.34286 -12.01555 -11.84396 -11.78718 -11.65601 -11.09433 -11.05218 -10.94386 -10.89052 -10.78675 -10.62981 -10.33425 -10.05920 -9.98610 -9.73557 -8.86802 -8.46779 -8.30102 -7.89093 -7.12287 -5.98743 -4.02867 1.55949 1.67157 3.32167 3.36134 3.38895 3.43310 3.95228 4.44102 4.88716 4.97173 5.07000 5.09937 5.16841 5.31091 5.35912 5.38038 5.53534 5.59529 5.67141 5.99582 6.06799 6.14476 6.18570 6.26969 6.40015 6.45518 6.55295 6.66559 6.70884 6.83295 6.86603 6.92981 7.07724 7.09883 7.18921 7.54864 7.55758 7.75542 7.85840 8.23829 8.35544 8.62870 9.03755 9.62022 11.08046 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.004759 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.147384 B = 5881.561535 C = 6082.650654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.315 6.315 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.094 4.094 6 C -0.148 4.148 7 C -0.028 4.028 8 C 0.083 3.917 9 N -0.526 5.526 10 C 0.037 3.963 11 C 0.212 3.788 12 H -0.003 1.003 13 C -0.133 4.133 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.088 4.088 23 C -0.100 4.100 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.036 0.964 37 H 0.085 0.915 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 0.150 5.519 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.228 6.228 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.112 4.112 6 C -0.167 4.167 7 C -0.029 4.029 8 C -0.045 4.045 9 N -0.251 5.251 10 C -0.112 4.112 11 C 0.106 3.894 12 H 0.015 0.985 13 C -0.191 4.191 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.089 4.089 23 C -0.156 4.156 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.069 0.931 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.027 0.973 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.515 -0.508 5.367 17.373 hybrid contribution 0.377 0.914 -0.662 1.190 sum -16.138 0.405 4.705 16.815 Atomic orbital electron populations 1.22978 0.79163 1.03455 1.00995 1.86071 1.20638 1.27119 1.88992 1.18825 0.91841 0.83907 0.98208 1.21063 0.99351 0.92497 1.10377 1.20767 0.94477 0.96619 0.99312 1.20968 0.93586 0.98018 1.04116 1.19704 0.96116 0.91435 0.95636 1.21153 0.89302 1.00106 0.93905 1.62146 1.15946 1.41930 1.05076 1.22238 0.98381 0.91530 0.99040 1.19264 0.80054 0.93776 0.96321 0.98495 1.21873 1.03786 0.98743 0.94735 1.21150 0.91997 1.48568 0.92246 0.91855 1.24917 0.96777 0.95424 0.97084 1.69887 1.02224 1.50605 1.30604 0.86539 0.78243 0.78018 0.84857 1.20858 1.21294 1.19854 1.19117 0.89970 0.96232 1.03602 1.20606 0.98613 0.93344 1.03084 0.92943 0.88613 0.93058 0.86157 0.86400 0.86390 0.95214 0.89404 0.97279 0.90557 0.93688 0.97343 0.94488 0.89671 0.93031 0.90541 0.91116 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.36 9.54 -19.42 -0.19 -4.54 16 3 C 0.12 1.77 6.66 -39.21 -0.26 1.51 16 4 C -0.21 -2.82 9.04 -39.43 -0.36 -3.18 16 5 C -0.09 -1.23 10.04 -39.60 -0.40 -1.63 16 6 C -0.15 -2.21 8.73 -39.56 -0.35 -2.56 16 7 C -0.03 -0.48 4.57 -104.65 -0.48 -0.95 16 8 C 0.08 1.55 4.30 -4.98 -0.02 1.53 16 9 N -0.53 -11.38 4.61 -237.73 -1.10 -12.48 16 10 C 0.04 0.75 8.99 60.07 0.54 1.29 16 11 C 0.21 5.32 2.06 -68.87 -0.14 5.17 16 12 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 13 C -0.13 -3.21 8.76 37.16 0.33 -2.89 16 14 C -0.50 -13.67 7.88 -34.44 -0.27 -13.94 16 15 H 0.06 1.73 6.41 -52.48 -0.34 1.40 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.89 -25.40 11.32 55.43 0.63 -24.78 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.09 -1.47 5.89 -104.47 -0.62 -2.09 16 23 C -0.10 -1.65 9.38 36.01 0.34 -1.31 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.63 8.03 -52.49 -0.42 1.21 16 30 H 0.03 0.55 7.98 -51.93 -0.41 0.14 16 31 H 0.09 1.65 4.08 -51.93 -0.21 1.44 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 1.65 6.10 -51.93 -0.32 1.34 16 34 H 0.04 0.83 6.65 -51.93 -0.35 0.49 16 35 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 2.26 6.07 -51.93 -0.31 1.94 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.07 1.19 6.12 -51.93 -0.32 0.87 16 41 H 0.06 0.85 7.54 -51.93 -0.39 0.46 16 LS Contribution 321.64 15.07 4.85 4.85 Total: -1.00 -29.33 321.64 -7.81 -37.14 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.19 Total: -0.28 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.79 Total: -16.25 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.47 Total: -37.26 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.19 Total: -4.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.33 -7.81 -37.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929830142.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.799 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds