Wall clock time and date at job start Mon Mar 30 2020 00:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 119.99777 * 2 1 4 4 C 1.38217 * 119.99580 * 180.02562 * 3 2 1 5 5 C 1.38258 * 120.00100 * 359.97438 * 4 3 2 6 6 C 1.38207 * 120.00114 * 359.95718 * 5 4 3 7 7 C 1.50699 * 120.00029 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47358 * 204.99469 * 7 6 5 9 9 O 1.42895 * 109.47044 * 325.00183 * 7 6 5 10 10 C 1.53006 * 109.46866 * 84.99874 * 7 6 5 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 7 6 12 12 C 1.46902 * 110.99994 * 293.95302 * 11 10 7 13 13 C 1.46901 * 110.99644 * 170.00094 * 11 10 7 14 14 H 1.08997 * 109.47092 * 60.00167 * 13 11 10 15 15 C 1.52998 * 109.47210 * 300.00136 * 13 11 10 16 16 C 1.50704 * 109.47200 * 179.97438 * 13 11 10 17 17 H 1.08001 * 119.99412 * 0.02562 * 16 13 11 18 18 C 1.37871 * 120.00052 * 179.97438 * 16 13 11 19 19 N 1.31514 * 120.00095 * 0.02562 * 18 16 13 20 20 Si 1.86799 * 120.00093 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46995 * 90.00506 * 20 18 16 22 22 H 1.48502 * 109.47264 * 210.00353 * 20 18 16 23 23 H 1.48502 * 109.46909 * 330.00459 * 20 18 16 24 24 C 1.38212 * 120.00000 * 180.20967 * 2 1 3 25 25 H 1.08999 * 109.47452 * 89.99759 * 1 2 3 26 26 H 1.09001 * 109.47309 * 210.00138 * 1 2 3 27 27 H 1.09002 * 109.47382 * 330.00072 * 1 2 3 28 28 H 1.07999 * 120.00435 * 0.02562 * 3 2 1 29 29 H 1.08008 * 119.99687 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.99575 * 179.97438 * 5 4 3 31 31 H 0.96695 * 114.00385 * 60.00268 * 9 7 6 32 32 H 1.08993 * 109.46955 * 300.00219 * 10 7 6 33 33 H 1.09000 * 109.47050 * 60.00048 * 10 7 6 34 34 H 1.08992 * 109.47140 * 60.00797 * 12 11 10 35 35 H 1.09002 * 109.46408 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47025 * 299.99832 * 12 11 10 37 37 H 1.08997 * 109.47119 * 300.00014 * 15 13 11 38 38 H 1.09003 * 109.47205 * 59.99714 * 15 13 11 39 39 H 1.08996 * 109.47113 * 180.02562 * 15 13 11 40 40 H 0.97004 * 120.00131 * 179.97438 * 19 18 16 41 41 H 1.08007 * 119.99972 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0009 7 6 4.3341 -2.5021 0.0015 8 1 3.7089 -3.2828 -0.4317 9 8 5.5275 -2.3634 -0.7721 10 6 4.6989 -2.8796 1.4386 11 7 5.4329 -4.1522 1.4392 12 6 4.5720 -5.2567 0.9955 13 6 6.0044 -4.4296 2.7637 14 1 5.2030 -4.4880 3.5002 15 6 6.9695 -3.3064 3.1482 16 6 6.7476 -5.7401 2.7258 17 1 6.7913 -6.3096 1.8092 18 6 7.3725 -6.2114 3.8608 19 7 7.3196 -5.5175 4.9767 20 14 8.2942 -7.8354 3.8135 21 1 9.7096 -7.5905 3.4367 22 1 8.2420 -8.4734 5.1535 23 1 7.6638 -8.7334 2.8128 24 6 2.1980 -1.1969 -0.0044 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6583 2.1327 0.0004 29 1 4.1204 2.1327 -0.0010 30 1 5.3516 0.0000 -0.0014 31 1 6.1326 -1.6845 -0.4435 32 1 5.3241 -2.0989 1.8718 33 1 3.7886 -2.9854 2.0288 34 1 4.2183 -5.0578 -0.0161 35 1 5.1402 -6.1868 1.0058 36 1 3.7188 -5.3450 1.6680 37 1 7.7709 -3.2479 2.4117 38 1 6.4316 -2.3587 3.1758 39 1 7.3939 -3.5124 4.1308 40 1 7.7590 -5.8493 5.7754 41 1 1.6580 -2.1323 -0.0082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929830263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:23 Heat of formation + Delta-G solvation = -24.189380 kcal Electronic energy + Delta-G solvation = -19981.955711 eV Core-core repulsion = 17054.659153 eV Total energy + Delta-G solvation = -2927.296558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77202 -37.61790 -35.80670 -32.77115 -32.69731 -31.53608 -29.29327 -27.99918 -26.95756 -25.35066 -24.23356 -22.54637 -21.96277 -20.22892 -19.38481 -17.13639 -16.35692 -15.91252 -15.73203 -15.22121 -14.59639 -14.38125 -13.96793 -13.91362 -13.57391 -13.41108 -13.11949 -12.68906 -12.37473 -12.32328 -12.19182 -11.72361 -11.60199 -11.15323 -11.08616 -11.06180 -10.91885 -10.68997 -10.33270 -10.14240 -10.05920 -9.98242 -9.57739 -8.87429 -8.77985 -8.57268 -8.40290 -7.11449 -5.99736 -4.03933 1.31149 1.35845 3.32364 3.38495 3.41995 3.69581 4.40752 4.60370 4.70886 4.78075 4.86214 5.06250 5.21879 5.27365 5.33731 5.35960 5.42888 5.44692 5.62310 5.65244 5.70006 5.98385 6.03392 6.12826 6.24451 6.27089 6.41668 6.43811 6.52283 6.66227 6.80711 6.84920 6.97440 7.05105 7.16927 7.52420 7.71838 7.84636 7.98034 8.22810 8.33896 8.62143 9.02888 9.61044 11.07188 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.035420 B = 0.004098 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.315724 B = 6830.164493 C = 6922.717979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.101 4.101 7 C 0.150 3.850 8 H 0.102 0.898 9 O -0.540 6.540 10 C 0.026 3.974 11 N -0.526 5.526 12 C 0.035 3.965 13 C 0.211 3.789 14 H -0.004 1.004 15 C -0.132 4.132 16 C -0.502 4.502 17 H 0.064 0.936 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.113 4.113 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.369 0.631 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.008 0.992 37 H 0.035 0.965 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.260 0.740 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 11.971 -8.798 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.102 4.102 7 C 0.091 3.909 8 H 0.120 0.880 9 O -0.345 6.345 10 C -0.103 4.103 11 N -0.250 5.250 12 C -0.114 4.114 13 C 0.105 3.895 14 H 0.014 0.986 15 C -0.190 4.190 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.131 4.131 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.216 0.784 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.244 11.503 -9.270 17.977 hybrid contribution 0.055 -0.403 1.101 1.174 sum -10.188 11.100 -8.169 17.139 Atomic orbital electron populations 1.20783 0.91307 1.02738 1.02188 1.19888 0.95974 0.93160 0.99741 1.20988 0.94300 0.97318 1.01969 1.21085 0.94270 0.97859 0.99991 1.20902 0.99957 0.91974 1.00630 1.20753 0.94409 0.96402 0.98646 1.20874 0.85661 0.91984 0.92421 0.88032 1.86604 1.31231 1.61844 1.54787 1.22776 0.97271 0.95739 0.94495 1.62060 1.32093 0.99826 1.31041 1.22264 0.95178 0.96585 0.97343 1.19257 0.92700 0.94837 0.82670 0.98644 1.21851 0.99142 0.94766 1.03285 1.21167 1.32400 1.04109 0.96348 0.91770 1.24933 0.96447 0.97487 0.95416 1.69896 1.44484 1.38183 1.00845 0.86514 0.80241 0.83628 0.77117 1.20658 1.21387 1.19923 1.20877 0.93444 0.97682 1.01088 0.91286 0.91505 0.91663 0.86367 0.86100 0.86054 0.78379 0.90391 0.95401 0.93719 0.90335 0.97378 0.94582 0.97496 0.89675 0.93032 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.09 -0.99 5.88 -104.63 -0.62 -1.60 16 3 C -0.13 -1.38 9.70 -39.58 -0.38 -1.76 16 4 C -0.11 -1.27 10.05 -39.58 -0.40 -1.67 16 5 C -0.12 -1.46 9.33 -39.59 -0.37 -1.83 16 6 C -0.10 -1.39 5.00 -104.63 -0.52 -1.92 16 7 C 0.15 2.34 3.08 -27.88 -0.09 2.26 16 8 H 0.10 1.59 6.46 -51.93 -0.34 1.26 16 9 O -0.54 -8.83 13.00 -35.23 -0.46 -9.29 16 10 C 0.03 0.48 4.42 -3.82 -0.02 0.46 16 11 N -0.53 -11.46 4.49 -236.28 -1.06 -12.53 16 12 C 0.03 0.70 9.04 60.07 0.54 1.25 16 13 C 0.21 5.40 2.06 -68.86 -0.14 5.25 16 14 H 0.00 -0.11 8.14 -51.93 -0.42 -0.54 16 15 C -0.13 -3.24 8.77 37.16 0.33 -2.92 16 16 C -0.50 -13.86 7.88 -34.44 -0.27 -14.13 16 17 H 0.06 1.78 6.40 -52.49 -0.34 1.44 16 18 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 19 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.11 -1.43 9.34 -39.58 -0.37 -1.80 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 27 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.12 1.34 6.61 -52.49 -0.35 0.99 16 31 H 0.37 5.00 7.39 45.56 0.34 5.34 16 32 H 0.08 1.44 5.83 -51.93 -0.30 1.14 16 33 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.04 0.79 6.47 -51.93 -0.34 0.45 16 35 H 0.08 1.71 6.10 -51.93 -0.32 1.39 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.01 0.14 6.20 -51.93 -0.32 -0.19 16 39 H 0.08 2.29 6.07 -51.93 -0.32 1.97 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -30.32 326.41 -8.66 -38.99 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.63 Total: 3.96 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -2.04 Total: -17.49 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.43 Total: -37.55 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.46 Total: -9.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.32 -8.66 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929830263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.799 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds