Wall clock time and date at job start Mon Mar 30 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39676 * 120.07857 * 179.70545 * 7 6 5 9 9 C 1.46492 * 120.00227 * 180.02562 * 8 7 6 10 10 C 1.46507 * 119.99552 * 0.02698 * 8 7 6 11 11 C 1.53002 * 109.47197 * 89.99932 * 10 8 7 12 12 H 1.08997 * 109.46910 * 59.99616 * 11 10 8 13 13 O 1.42904 * 109.46844 * 299.99920 * 11 10 8 14 14 C 1.50698 * 109.46990 * 179.97438 * 11 10 8 15 15 H 1.08004 * 120.00168 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99748 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00451 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00003 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47110 * 90.00012 * 18 16 14 20 20 H 1.48498 * 109.47202 * 210.00318 * 18 16 14 21 21 H 1.48501 * 109.47036 * 330.00076 * 18 16 14 22 22 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 23 23 C 1.38099 * 119.93044 * 359.97438 * 22 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 32 32 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 33 33 H 1.08996 * 109.47088 * 90.00106 * 9 8 7 34 34 H 1.09005 * 109.46697 * 210.00271 * 9 8 7 35 35 H 1.09001 * 109.47436 * 329.99904 * 9 8 7 36 36 H 1.09000 * 109.47060 * 209.99977 * 10 8 7 37 37 H 1.09004 * 109.46719 * 329.99651 * 10 8 7 38 38 H 0.96705 * 113.99720 * 299.99700 * 13 11 10 39 39 H 0.96992 * 120.00324 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.03388 * 179.97438 * 22 7 6 41 41 H 1.07999 * 119.97120 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4199 -2.6734 -4.6302 9 6 4.2617 -3.8647 -4.4959 10 6 3.0659 -2.1728 -5.9609 11 6 4.1207 -1.1661 -6.4243 12 1 5.0945 -1.6539 -6.4668 13 8 4.1744 -0.0746 -5.5035 14 6 3.7569 -0.6517 -7.7933 15 1 2.8629 -1.0075 -8.2839 16 6 4.5652 0.2732 -8.4194 17 7 5.6541 0.7062 -7.8223 18 14 4.1147 0.9104 -10.1166 19 1 3.2604 2.1175 -9.9814 20 1 5.3524 1.2605 -10.8586 21 1 3.3730 -0.1404 -10.8590 22 6 3.2893 -2.4879 -2.2274 23 6 2.8277 -1.8343 -1.1019 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.0676 0.6356 -2.5827 32 1 1.8937 -0.5146 -4.5954 33 1 3.6312 -4.7532 -4.4624 34 1 4.9371 -3.9303 -5.3489 35 1 4.8432 -3.7969 -3.5764 36 1 3.0248 -3.0053 -6.6632 37 1 2.0920 -1.6850 -5.9182 38 1 3.3403 0.4066 -5.4148 39 1 6.2225 1.3571 -8.2626 40 1 3.9099 -3.3660 -2.1263 41 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929840105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:57 Heat of formation + Delta-G solvation = -30.873928 kcal Electronic energy + Delta-G solvation = -20145.580344 eV Core-core repulsion = 17217.993922 eV Total energy + Delta-G solvation = -2927.586422 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42038 -37.14232 -35.21896 -33.78305 -32.14076 -30.60498 -29.24262 -28.26990 -27.02190 -26.08778 -24.22848 -22.16466 -21.85485 -20.30472 -19.25599 -17.36940 -16.65345 -15.38989 -15.00537 -14.76732 -14.52504 -14.36068 -14.07088 -13.60268 -13.39271 -13.28299 -12.99419 -12.65097 -12.58250 -12.36198 -12.21941 -11.81648 -11.60634 -11.21096 -11.06504 -11.02201 -10.97084 -10.76052 -10.66320 -10.44072 -10.17519 -10.06115 -9.55262 -8.86580 -8.61623 -8.41413 -8.19679 -6.53090 -6.02217 -4.23699 1.95591 2.12101 3.25189 3.32485 3.34363 3.75657 4.36048 4.37882 4.95112 5.03134 5.23378 5.35775 5.36819 5.40470 5.57138 5.63536 5.70401 5.76719 5.83311 5.85167 5.91505 5.93899 6.02990 6.09172 6.12862 6.24622 6.30170 6.36014 6.40452 6.48349 6.53891 6.67222 6.85858 6.92677 7.17526 7.37642 7.64798 7.76796 7.85381 8.10196 8.19218 8.80255 9.39305 9.55721 11.00143 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.004995 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.934041 B = 5604.295239 C = 6301.504145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.143 4.143 4 C -0.154 4.154 5 C -0.066 4.066 6 C -0.183 4.183 7 C 0.239 3.761 8 N -0.621 5.621 9 C 0.096 3.904 10 C 0.092 3.908 11 C 0.217 3.783 12 H 0.053 0.947 13 O -0.555 6.555 14 C -0.577 4.577 15 H 0.056 0.944 16 C 0.081 3.919 17 N -0.857 5.857 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.211 4.211 23 C -0.072 4.072 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.341 0.659 39 H 0.261 0.739 40 H 0.114 0.886 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.468 -4.340 12.622 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.156 4.156 5 C -0.085 4.085 6 C -0.205 4.205 7 C 0.135 3.865 8 N -0.329 5.329 9 C -0.047 4.047 10 C -0.031 4.031 11 C 0.158 3.842 12 H 0.071 0.929 13 O -0.358 6.358 14 C -0.616 4.616 15 H 0.074 0.926 16 C -0.125 4.125 17 N -0.492 5.492 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.234 4.234 23 C -0.091 4.091 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.130 0.870 32 H 0.140 0.860 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.185 0.815 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.593 -4.557 12.478 14.830 hybrid contribution -0.584 0.503 -1.247 1.466 sum -7.177 -4.054 11.231 13.931 Atomic orbital electron populations 1.21856 0.95257 1.01546 1.01302 1.19909 0.95146 0.95620 0.95593 1.21860 1.01308 0.95631 1.01283 1.19381 1.03707 0.98454 0.94086 1.20605 0.98102 0.98253 0.91540 1.20699 1.03337 0.97522 0.98920 1.17789 0.91285 0.90966 0.86471 1.46603 1.53641 1.28665 1.04016 1.21526 0.94105 0.86822 1.02270 1.22556 1.00291 0.98884 0.81322 1.19744 0.93807 0.83607 0.87057 0.92905 1.86632 1.36923 1.47073 1.65135 1.21604 1.10213 1.26958 1.02790 0.92564 1.25023 0.94445 0.95770 0.97276 1.70083 1.12785 1.29192 1.37120 0.86674 0.78018 0.79331 0.84355 1.20479 1.21121 1.19817 1.20541 1.07696 1.03949 0.91200 1.20601 0.96609 0.94737 0.97173 0.92856 0.93171 0.92590 0.91443 0.92606 0.92507 0.93210 0.86965 0.85957 0.94258 0.91588 0.91997 0.91512 0.91656 0.81522 0.92951 0.86822 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.00 37.16 0.33 -1.14 16 2 C -0.04 -0.52 3.09 -91.77 -0.28 -0.80 16 3 C -0.14 -1.62 9.01 37.16 0.33 -1.28 16 4 C -0.15 -2.22 4.79 -104.59 -0.50 -2.72 16 5 C -0.07 -1.03 8.70 -39.61 -0.34 -1.37 16 6 C -0.18 -3.21 7.78 -39.38 -0.31 -3.52 16 7 C 0.24 4.32 6.20 -83.79 -0.52 3.80 16 8 N -0.62 -11.40 2.95 -179.62 -0.53 -11.93 16 9 C 0.10 1.47 10.19 59.84 0.61 2.08 16 10 C 0.09 1.85 4.94 -4.04 -0.02 1.83 16 11 C 0.22 5.38 3.09 -27.88 -0.09 5.30 16 12 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 13 O -0.55 -14.33 11.36 -35.23 -0.40 -14.73 16 14 C -0.58 -15.48 8.76 -34.44 -0.30 -15.78 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.27 12.84 55.43 0.71 -24.56 16 18 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.21 -3.42 9.21 -39.38 -0.36 -3.78 16 23 C -0.07 -1.07 9.66 -39.61 -0.38 -1.45 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 27 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.66 7.40 -51.93 -0.38 0.27 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 1.55 7.09 -52.48 -0.37 1.18 16 32 H 0.12 2.21 4.77 -52.48 -0.25 1.96 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 35 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 36 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 37 H 0.07 1.28 6.20 -51.93 -0.32 0.95 16 38 H 0.34 8.05 7.02 45.56 0.32 8.37 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.11 1.66 6.14 -52.48 -0.32 1.33 16 41 H 0.11 1.35 7.94 -52.49 -0.42 0.93 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -30.22 326.85 -8.02 -38.23 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.78 Total: 8.88 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -1.92 Total: -16.69 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.18 Total: -36.49 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.40 Total: -14.73 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.22 -8.02 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929840105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.357 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds