Wall clock time and date at job start Mon Mar 30 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38287 * 119.92498 * 59.72499 * 4 2 1 6 6 C 1.38103 * 120.07544 * 179.72708 * 5 4 2 7 7 C 1.38910 * 119.92428 * 0.54143 * 6 5 4 8 8 N 1.39676 * 120.07857 * 179.70545 * 7 6 5 9 9 C 1.46492 * 120.00227 * 180.02562 * 8 7 6 10 10 C 1.46507 * 119.99552 * 0.02698 * 8 7 6 11 11 C 1.53002 * 109.47197 * 89.99932 * 10 8 7 12 12 H 1.08997 * 109.46910 * 59.99616 * 11 10 8 13 13 O 1.42904 * 109.46844 * 299.99920 * 11 10 8 14 14 C 1.50698 * 109.46990 * 179.97438 * 11 10 8 15 15 H 1.08004 * 120.00168 * 359.97438 * 14 11 10 16 16 C 1.37875 * 119.99748 * 179.97438 * 14 11 10 17 17 N 1.31515 * 120.00451 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00003 * 179.97438 * 16 14 11 19 19 H 1.48496 * 109.47110 * 90.00012 * 18 16 14 20 20 H 1.48498 * 109.47202 * 210.00318 * 18 16 14 21 21 H 1.48501 * 109.47036 * 330.00076 * 18 16 14 22 22 C 1.38909 * 119.84779 * 359.73239 * 7 6 5 23 23 C 1.38099 * 119.93044 * 359.97438 * 22 7 6 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08004 * 119.96348 * 359.97438 * 5 4 2 32 32 H 1.08005 * 120.03631 * 180.27369 * 6 5 4 33 33 H 1.08996 * 109.47088 * 90.00106 * 9 8 7 34 34 H 1.09005 * 109.46697 * 210.00271 * 9 8 7 35 35 H 1.09001 * 109.47436 * 329.99904 * 9 8 7 36 36 H 1.09000 * 109.47060 * 209.99977 * 10 8 7 37 37 H 1.09004 * 109.46719 * 329.99651 * 10 8 7 38 38 H 0.96705 * 113.99720 * 299.99700 * 13 11 10 39 39 H 0.96992 * 120.00324 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.03388 * 179.97438 * 22 7 6 41 41 H 1.07999 * 119.97120 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6926 -0.2399 -2.4857 6 6 2.1558 -0.8852 -3.6154 7 6 2.9546 -2.0146 -3.4898 8 7 3.4199 -2.6734 -4.6302 9 6 4.2617 -3.8647 -4.4959 10 6 3.0659 -2.1728 -5.9609 11 6 4.1207 -1.1661 -6.4243 12 1 5.0945 -1.6539 -6.4668 13 8 4.1744 -0.0746 -5.5035 14 6 3.7569 -0.6517 -7.7933 15 1 2.8629 -1.0075 -8.2839 16 6 4.5652 0.2732 -8.4194 17 7 5.6541 0.7062 -7.8223 18 14 4.1147 0.9104 -10.1166 19 1 3.2604 2.1175 -9.9814 20 1 5.3524 1.2605 -10.8586 21 1 3.3730 -0.1404 -10.8590 22 6 3.2893 -2.4879 -2.2274 23 6 2.8277 -1.8343 -1.1019 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.0676 0.6356 -2.5827 32 1 1.8937 -0.5146 -4.5954 33 1 3.6312 -4.7532 -4.4624 34 1 4.9371 -3.9303 -5.3489 35 1 4.8432 -3.7969 -3.5764 36 1 3.0248 -3.0053 -6.6632 37 1 2.0920 -1.6850 -5.9182 38 1 3.3403 0.4066 -5.4148 39 1 6.2225 1.3571 -8.2626 40 1 3.9099 -3.3660 -2.1263 41 1 3.0871 -2.2019 -0.1200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929840105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:57 Heat of formation + Delta-G solvation = -48.464073 kcal Electronic energy + Delta-G solvation = -20146.343110 eV Core-core repulsion = 17217.993922 eV Total energy + Delta-G solvation = -2928.349188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68559 -38.58414 -36.84305 -35.01171 -34.25317 -31.88371 -30.85912 -29.57259 -27.86493 -27.77528 -25.75302 -23.58440 -23.21006 -21.76634 -20.43230 -19.20602 -18.15647 -16.79206 -16.70156 -16.45839 -15.98637 -15.70703 -15.46897 -15.02837 -14.82067 -14.37751 -14.29279 -14.16438 -13.95590 -13.46439 -13.21964 -13.15705 -12.97618 -12.85190 -12.78770 -12.72403 -12.36358 -12.06944 -11.93010 -11.84523 -11.48405 -11.31892 -11.20649 -10.73033 -10.56395 -10.02678 -9.64210 -8.18606 -7.84421 -6.41673 0.71126 0.88286 1.40166 1.40388 1.51304 2.31797 2.47623 3.11535 3.13047 3.94977 4.02952 4.12110 4.19620 4.24396 4.37714 4.47492 4.48197 4.54000 4.63870 4.74065 4.75592 4.80581 4.89522 4.90298 4.95866 5.06640 5.09323 5.11224 5.22237 5.29165 5.44063 5.50361 5.57168 5.60506 5.67548 5.74765 5.99617 6.01510 6.20116 6.48758 6.73803 6.80249 7.32300 7.53171 8.89697 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023525 B = 0.004995 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.934041 B = 5604.295239 C = 6301.504145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.143 4.143 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.202 4.202 7 C 0.211 3.789 8 N -0.632 5.632 9 C 0.094 3.906 10 C 0.111 3.889 11 C 0.219 3.781 12 H 0.014 0.986 13 O -0.570 6.570 14 C -0.588 4.588 15 H 0.064 0.936 16 C 0.027 3.973 17 N -0.901 5.901 18 Si 0.960 3.040 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.216 4.216 23 C -0.077 4.077 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.348 0.652 39 H 0.260 0.740 40 H 0.128 0.872 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 -4.545 13.774 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.200 4.200 4 C -0.152 4.152 5 C -0.091 4.091 6 C -0.224 4.224 7 C 0.108 3.892 8 N -0.342 5.342 9 C -0.049 4.049 10 C -0.013 4.013 11 C 0.160 3.840 12 H 0.032 0.968 13 O -0.374 6.374 14 C -0.626 4.626 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.538 5.538 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.238 4.238 23 C -0.095 4.095 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.146 0.854 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.944 -4.779 13.650 16.501 hybrid contribution -0.177 0.579 -1.481 1.600 sum -8.121 -4.200 12.169 15.221 Atomic orbital electron populations 1.21831 0.94118 1.01719 1.02038 1.19980 0.96050 0.95540 0.94612 1.21853 1.00586 0.95572 1.02008 1.19777 1.02532 0.98126 0.94755 1.20807 0.98181 0.98545 0.91583 1.20747 1.04416 0.98205 0.99062 1.18065 0.92367 0.91655 0.87070 1.46592 1.54655 1.29642 1.03286 1.21658 0.94203 0.86656 1.02344 1.22096 0.98573 0.97851 0.82770 1.19618 0.93358 0.84279 0.86742 0.96805 1.86570 1.37727 1.47801 1.65278 1.22030 1.10188 1.26645 1.03742 0.91782 1.25902 0.94234 0.96100 1.01317 1.70233 1.14190 1.30214 1.39118 0.85553 0.77691 0.78893 0.79395 1.19882 1.21098 1.18622 1.20804 1.07659 1.04500 0.90863 1.20985 0.95979 0.94526 0.98023 0.92975 0.91264 0.93091 0.90001 0.93721 0.93240 0.91097 0.85733 0.87328 0.91914 0.92496 0.91036 0.90692 0.91272 0.80724 0.93081 0.85411 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.00 71.98 0.65 -1.88 16 2 C -0.04 -0.90 3.09 -11.54 -0.04 -0.93 16 3 C -0.14 -2.91 9.01 71.98 0.65 -2.26 16 4 C -0.15 -4.05 4.79 -19.84 -0.09 -4.15 16 5 C -0.07 -2.21 8.70 22.25 0.19 -2.01 16 6 C -0.20 -7.17 7.78 22.40 0.17 -6.99 16 7 C 0.21 7.59 6.20 38.21 0.24 7.83 16 8 N -0.63 -23.28 2.95 -722.18 -2.13 -25.41 16 9 C 0.09 2.83 10.19 127.77 1.30 4.14 16 10 C 0.11 4.51 4.94 86.38 0.43 4.94 16 11 C 0.22 11.20 3.09 29.85 0.09 11.30 16 12 H 0.01 0.82 8.14 -2.39 -0.02 0.80 16 13 O -0.57 -30.40 11.36 -148.98 -1.69 -32.09 16 14 C -0.59 -31.93 8.76 25.60 0.22 -31.70 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.03 1.51 5.40 84.65 0.46 1.96 16 17 N -0.90 -54.40 12.84 21.45 0.28 -54.12 16 18 Si 0.96 43.14 29.54 68.60 2.03 45.16 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 22 C -0.22 -6.70 9.21 22.40 0.21 -6.50 16 23 C -0.08 -2.09 9.66 22.25 0.21 -1.88 16 24 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.97 7.37 -2.39 -0.02 0.95 16 27 H 0.08 1.49 7.87 -2.39 -0.02 1.47 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.07 7.40 -2.39 -0.02 1.05 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.12 3.36 7.09 -2.91 -0.02 3.34 16 32 H 0.11 4.05 4.77 -2.91 -0.01 4.03 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.78 8.07 -2.38 -0.02 1.76 16 35 H 0.07 1.97 6.20 -2.39 -0.01 1.96 16 36 H 0.07 2.88 8.07 -2.39 -0.02 2.86 16 37 H 0.07 2.74 6.20 -2.38 -0.01 2.72 16 38 H 0.35 17.04 7.02 -74.05 -0.52 16.52 16 39 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.13 3.50 6.14 -2.91 -0.02 3.48 16 41 H 0.14 2.93 7.94 -2.91 -0.02 2.91 16 Total: -1.00 -65.17 326.85 3.67 -61.51 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.49 Total: 33.10 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.69 Total: -28.15 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -1.85 Total: -79.53 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.69 Total: -32.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -65.17 3.67 -61.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929840105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.044 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds