Wall clock time and date at job start Mon Mar 30 2020 00:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 120.00236 * 2 1 4 4 C 1.38230 * 120.00326 * 179.72466 * 3 2 1 5 5 C 1.50696 * 120.00309 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99880 * 359.97438 * 4 3 2 7 7 C 1.38234 * 120.00264 * 359.95214 * 6 4 3 8 8 C 1.50701 * 120.00279 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47160 * 19.99732 * 8 7 6 10 10 C 1.53002 * 109.47019 * 259.99967 * 8 7 6 11 11 N 1.46898 * 109.47094 * 140.00423 * 8 7 6 12 12 C 1.46907 * 110.99795 * 204.99852 * 11 8 7 13 13 C 1.52999 * 109.46954 * 179.97438 * 12 11 8 14 14 H 1.08996 * 109.47295 * 60.00501 * 13 12 11 15 15 O 1.42898 * 109.47344 * 299.99654 * 13 12 11 16 16 C 1.50704 * 109.46927 * 179.97438 * 13 12 11 17 17 H 1.08005 * 119.99782 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00115 * 180.02562 * 16 13 12 19 19 N 1.31517 * 120.00091 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 119.99946 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.47001 * 90.00092 * 20 18 16 22 22 H 1.48509 * 109.47243 * 209.99848 * 20 18 16 23 23 H 1.48501 * 109.47505 * 329.99927 * 20 18 16 24 24 C 1.38232 * 119.99842 * 0.13879 * 7 6 4 25 25 H 1.09000 * 109.47344 * 89.99948 * 1 2 3 26 26 H 1.09003 * 109.46871 * 209.99878 * 1 2 3 27 27 H 1.09001 * 109.47017 * 329.99216 * 1 2 3 28 28 H 1.08000 * 119.99297 * 359.70257 * 3 2 1 29 29 H 1.08996 * 109.47441 * 89.99986 * 5 4 3 30 30 H 1.09003 * 109.47255 * 210.00399 * 5 4 3 31 31 H 1.09001 * 109.46747 * 329.99788 * 5 4 3 32 32 H 1.08008 * 120.00283 * 179.97438 * 6 4 3 33 33 H 1.08997 * 109.47374 * 180.02562 * 10 8 7 34 34 H 1.09005 * 109.47419 * 300.00093 * 10 8 7 35 35 H 1.09003 * 109.46908 * 60.00211 * 10 8 7 36 36 H 1.00899 * 111.00367 * 81.04384 * 11 8 7 37 37 H 1.08996 * 109.47294 * 300.00189 * 12 11 8 38 38 H 1.09005 * 109.47227 * 59.99947 * 12 11 8 39 39 H 0.96697 * 114.00328 * 300.00527 * 15 13 12 40 40 H 0.96988 * 120.00323 * 179.97438 * 19 18 16 41 41 H 1.08001 * 120.00365 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.3341 2.5022 0.0052 6 6 4.2717 0.0000 0.0120 7 6 3.5806 -1.1972 0.0136 8 6 4.3340 -2.5023 0.0210 9 1 5.3507 -2.3328 0.3758 10 6 4.3775 -3.0741 -1.3975 11 7 3.6566 -3.4537 0.9119 12 6 4.5966 -4.4640 1.4158 13 6 3.8562 -5.4343 2.3383 14 1 3.0577 -5.9261 1.7829 15 8 3.2973 -4.7132 3.4382 16 6 4.8204 -6.4711 2.8547 17 1 5.8576 -6.4406 2.5551 18 6 4.3784 -7.4585 3.7095 19 7 3.1155 -7.4952 4.0748 20 14 5.5737 -8.7431 4.3501 21 1 6.1827 -8.2644 5.6171 22 1 4.8475 -10.0143 4.5993 23 1 6.6410 -8.9719 3.3433 24 6 2.1983 -1.1972 0.0059 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5140 28 1 1.6582 2.1324 -0.0049 29 1 4.5115 2.8198 1.0326 30 1 5.2886 2.3704 -0.5044 31 1 3.7471 3.2603 -0.5133 32 1 5.3518 0.0000 0.0161 33 1 4.9221 -4.0183 -1.3921 34 1 3.3609 -3.2435 -1.7523 35 1 4.8802 -2.3681 -2.0585 36 1 2.8729 -3.8883 0.4482 37 1 5.0233 -5.0137 0.5769 38 1 5.3950 -3.9723 1.9717 39 1 3.9521 -4.2497 3.9781 40 1 2.8045 -8.1900 4.6758 41 1 1.6582 -2.1325 0.0067 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930217688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:28 Heat of formation + Delta-G solvation = -46.521483 kcal Electronic energy + Delta-G solvation = -19562.965248 eV Core-core repulsion = 16634.700297 eV Total energy + Delta-G solvation = -2928.264951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63388 -36.98105 -35.12681 -33.43180 -32.09817 -31.81919 -29.41261 -27.33946 -27.22969 -26.55740 -24.38520 -22.93838 -20.91180 -20.30750 -19.68481 -16.89876 -16.29623 -15.60705 -15.25856 -14.60625 -14.45820 -14.11428 -13.90943 -13.90114 -13.50303 -13.21568 -12.98227 -12.78547 -12.62581 -12.53492 -12.52623 -12.02656 -11.84694 -11.44669 -11.25716 -11.14000 -10.93494 -10.79978 -10.74628 -10.69657 -10.54819 -10.03194 -8.97401 -8.56665 -8.44792 -8.37881 -8.05298 -7.70868 -5.98484 -4.16948 1.52304 1.55711 3.28563 3.35491 3.37816 3.85768 4.37811 4.65429 4.83262 4.92865 4.98610 5.25815 5.28267 5.29421 5.34801 5.39239 5.49255 5.53172 5.59823 5.63081 5.70547 5.78925 5.86908 5.92649 5.94590 6.13422 6.23792 6.27193 6.29524 6.35256 6.53969 6.67491 6.74492 6.82971 6.89087 7.19751 7.62829 7.71758 7.86799 7.96338 8.22967 8.87043 9.48938 9.65422 11.05683 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029530 B = 0.003910 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.947584 B = 7160.196297 C = 7480.036969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.089 4.089 5 C -0.111 4.111 6 C -0.125 4.125 7 C -0.049 4.049 8 C 0.117 3.883 9 H 0.080 0.920 10 C -0.176 4.176 11 N -0.671 5.671 12 C 0.035 3.965 13 C 0.235 3.765 14 H 0.051 0.949 15 O -0.554 6.554 16 C -0.574 4.574 17 H 0.054 0.946 18 C 0.079 3.921 19 N -0.859 5.859 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.099 4.099 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.336 0.664 37 H 0.023 0.977 38 H 0.060 0.940 39 H 0.343 0.657 40 H 0.260 0.740 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 16.260 -10.440 19.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.168 4.168 6 C -0.144 4.144 7 C -0.050 4.050 8 C 0.007 3.993 9 H 0.099 0.901 10 C -0.235 4.235 11 N -0.301 5.301 12 C -0.094 4.094 13 C 0.177 3.823 14 H 0.069 0.931 15 O -0.356 6.356 16 C -0.612 4.612 17 H 0.072 0.928 18 C -0.127 4.127 19 N -0.494 5.494 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.118 4.118 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.186 0.814 40 H 0.070 0.930 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.936 16.303 -10.025 19.161 hybrid contribution 1.405 -1.181 -0.205 1.847 sum 0.469 15.122 -10.230 18.263 Atomic orbital electron populations 1.20774 0.91479 1.02814 1.01910 1.19881 0.95876 0.93158 0.99686 1.20781 0.93437 0.97251 1.03426 1.19771 0.93796 0.94983 1.00308 1.20747 0.99667 0.94229 1.02109 1.20821 0.99339 0.91515 1.02718 1.19829 0.93824 0.94200 0.97101 1.20489 0.97097 0.90453 0.91298 0.90132 1.22482 1.02177 1.01243 0.97584 1.60600 1.10709 1.19860 1.38898 1.22933 0.95304 0.92963 0.98200 1.19289 0.92479 0.86609 0.83944 0.93148 1.86549 1.37074 1.68678 1.43315 1.21646 0.95898 1.12932 1.30738 0.92751 1.25027 0.94892 0.97080 0.95665 1.70081 1.14148 1.32583 1.32611 0.86680 0.81225 0.81132 0.79352 1.20515 1.21135 1.19904 1.20814 0.93677 0.97375 0.99895 0.91568 0.91267 0.91876 0.86741 0.91389 0.91816 0.91921 0.86612 0.92159 0.92429 0.92478 0.84540 0.95912 0.92172 0.81356 0.93015 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.09 -1.11 5.88 -104.62 -0.62 -1.73 16 3 C -0.13 -1.59 9.36 -39.59 -0.37 -1.96 16 4 C -0.09 -1.08 5.88 -104.63 -0.62 -1.69 16 5 C -0.11 -1.01 10.01 36.00 0.36 -0.65 16 6 C -0.13 -1.66 9.32 -39.58 -0.37 -2.03 16 7 C -0.05 -0.71 4.95 -104.63 -0.52 -1.23 16 8 C 0.12 1.75 2.79 -68.86 -0.19 1.55 16 9 H 0.08 1.21 7.66 -51.93 -0.40 0.82 16 10 C -0.18 -2.29 9.14 37.16 0.34 -1.95 16 11 N -0.67 -11.99 5.57 -107.95 -0.60 -12.59 16 12 C 0.03 0.71 5.09 -3.82 -0.02 0.69 16 13 C 0.23 5.97 3.03 -27.88 -0.08 5.88 16 14 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 15 O -0.55 -14.68 12.60 -35.23 -0.44 -15.13 16 16 C -0.57 -15.81 8.76 -34.44 -0.30 -16.12 16 17 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 18 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 19 N -0.86 -25.60 12.84 55.43 0.71 -24.89 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.10 -1.43 8.98 -39.58 -0.36 -1.79 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 27 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.12 1.36 8.04 -52.48 -0.42 0.94 16 33 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 34 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.34 5.94 7.82 -39.29 -0.31 5.63 16 37 H 0.02 0.45 7.43 -51.93 -0.39 0.07 16 38 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 39 H 0.34 8.30 9.04 45.56 0.41 8.71 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.12 1.76 7.25 -52.49 -0.38 1.37 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -30.74 340.37 -8.75 -39.48 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.04 Total: 11.45 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -2.48 Total: -19.69 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.11 Total: -37.48 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.44 Total: -15.13 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.74 -8.75 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930217688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.038 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds