Wall clock time and date at job start Mon Mar 30 2020 00:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38256 * 120.00153 * 2 1 4 4 C 1.38220 * 119.99819 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.38206 * 120.00470 * 359.94961 * 5 4 3 7 7 C 1.50700 * 119.99954 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.46919 * 105.00928 * 7 6 5 9 9 C 1.46904 * 110.99719 * 288.23693 * 8 7 6 10 10 C 1.46898 * 110.99978 * 164.28419 * 8 7 6 11 11 C 1.53003 * 109.47022 * 199.53488 * 10 8 7 12 12 H 1.09002 * 109.47207 * 53.88155 * 11 10 8 13 13 O 1.42902 * 109.47225 * 293.88163 * 11 10 8 14 14 C 1.50694 * 109.47318 * 173.88326 * 11 10 8 15 15 H 1.08001 * 119.99852 * 0.27011 * 14 11 10 16 16 C 1.37881 * 120.00443 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99359 * 359.97438 * 16 14 11 18 18 Si 1.86793 * 120.00248 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47461 * 59.99081 * 18 16 14 20 20 H 1.48498 * 109.47113 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46962 * 299.99485 * 18 16 14 22 22 C 1.38220 * 119.99994 * 180.21250 * 2 1 3 23 23 C 1.50700 * 119.99807 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.47510 * 90.00251 * 1 2 3 25 25 H 1.08999 * 109.47373 * 210.00340 * 1 2 3 26 26 H 1.09004 * 109.47283 * 329.99732 * 1 2 3 27 27 H 1.07994 * 119.99840 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.99667 * 179.97438 * 4 3 2 29 29 H 1.08005 * 119.99589 * 179.97438 * 5 4 3 30 30 H 1.08995 * 109.47505 * 345.01006 * 7 6 5 31 31 H 1.09000 * 109.47188 * 225.00368 * 7 6 5 32 32 H 1.08996 * 109.47015 * 288.30866 * 9 8 7 33 33 H 1.08997 * 109.46754 * 48.31245 * 9 8 7 34 34 H 1.09005 * 109.46539 * 168.30843 * 9 8 7 35 35 H 1.09002 * 109.47080 * 79.53764 * 10 8 7 36 36 H 1.08991 * 109.47201 * 319.53133 * 10 8 7 37 37 H 0.96697 * 113.99876 * 300.00109 * 13 11 10 38 38 H 0.97006 * 119.99807 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.47432 * 274.41857 * 23 22 2 40 40 H 1.09000 * 109.47040 * 34.42070 * 23 22 2 41 41 H 1.09000 * 109.46954 * 154.42122 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 -0.0001 -0.0016 6 6 3.5806 -1.1970 -0.0011 7 6 4.3341 -2.5021 -0.0017 8 7 4.2693 -3.1055 1.3361 9 6 5.1016 -2.3607 2.2904 10 6 4.6560 -4.5220 1.2940 11 6 4.1288 -5.2319 2.5427 12 1 3.0561 -5.0608 2.6323 13 8 4.7916 -4.7167 3.6991 14 6 4.3937 -6.7111 2.4292 15 1 4.8925 -7.1049 1.5559 16 6 4.0039 -7.5611 3.4424 17 7 3.4013 -7.0808 4.5081 18 14 4.3329 -9.3944 3.3020 19 1 5.7945 -9.6273 3.1807 20 1 3.8212 -10.0834 4.5138 21 1 3.6450 -9.9301 2.0998 22 6 2.1980 -1.1970 -0.0044 23 6 1.4445 -2.5021 -0.0099 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6583 2.1326 -0.0004 28 1 4.1204 2.1325 -0.0010 29 1 5.3516 -0.0001 -0.0024 30 1 5.3752 -2.3205 -0.2682 31 1 3.8860 -3.1801 -0.7280 32 1 6.1542 -2.5408 2.0721 33 1 4.8895 -1.2951 2.2030 34 1 4.8785 -2.6937 3.3041 35 1 5.7427 -4.6013 1.2626 36 1 4.2318 -4.9882 0.4048 37 1 5.7513 -4.8347 3.6876 38 1 3.1273 -7.6788 5.2212 39 1 1.1938 -2.7812 1.0135 40 1 0.5289 -2.3905 -0.5907 41 1 2.0657 -3.2785 -0.4564 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930539458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:27 Heat of formation + Delta-G solvation = -32.487789 kcal Electronic energy + Delta-G solvation = -20129.599641 eV Core-core repulsion = 17201.943237 eV Total energy + Delta-G solvation = -2927.656404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.71925 -37.27512 -34.91168 -33.20653 -32.24021 -31.98899 -28.77847 -27.72392 -26.63152 -26.02986 -25.08917 -22.47508 -20.66070 -20.30391 -20.00134 -16.92819 -15.98987 -15.89927 -14.90656 -14.84949 -14.59233 -14.53859 -14.10058 -13.86464 -13.30640 -12.93842 -12.78567 -12.60166 -12.44625 -12.33267 -12.29443 -11.88101 -11.61141 -11.44714 -11.15259 -10.97140 -10.86691 -10.82491 -10.72565 -10.50547 -10.48956 -9.98353 -9.01967 -8.54927 -8.47942 -8.33865 -8.15123 -7.51833 -5.97743 -4.16234 1.49799 1.55592 3.29804 3.35419 3.36820 3.83920 4.38501 4.70647 4.90021 4.93031 5.09605 5.18089 5.28983 5.38763 5.45441 5.51481 5.62854 5.75091 5.76956 5.86491 5.90613 5.93529 6.01854 6.10778 6.15808 6.20141 6.29695 6.33742 6.48824 6.54299 6.62305 6.69519 6.75637 6.92643 6.98066 7.20011 7.58017 7.71847 7.78923 8.00736 8.24355 8.87350 9.42387 9.61369 11.06175 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030795 B = 0.004449 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.031380 B = 6291.628896 C = 6670.400313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.124 4.124 4 C -0.129 4.129 5 C -0.119 4.119 6 C -0.067 4.067 7 C 0.087 3.913 8 N -0.526 5.526 9 C 0.023 3.977 10 C 0.032 3.968 11 C 0.239 3.761 12 H 0.063 0.937 13 O -0.560 6.560 14 C -0.574 4.574 15 H 0.053 0.947 16 C 0.081 3.919 17 N -0.857 5.857 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.056 4.056 23 C -0.111 4.111 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.011 0.989 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.339 0.661 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 13.896 -9.632 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.137 4.137 6 C -0.067 4.067 7 C -0.041 4.041 8 N -0.249 5.249 9 C -0.125 4.125 10 C -0.095 4.095 11 C 0.182 3.818 12 H 0.081 0.919 13 O -0.362 6.362 14 C -0.613 4.613 15 H 0.071 0.929 16 C -0.125 4.125 17 N -0.493 5.493 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.056 4.056 23 C -0.167 4.167 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.182 0.818 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.569 14.022 -9.122 16.924 hybrid contribution 1.730 -1.169 -0.559 2.162 sum -0.839 12.853 -9.681 16.113 Atomic orbital electron populations 1.20785 0.91532 1.02785 1.01892 1.19758 0.95853 0.92700 1.01077 1.20912 0.94201 0.97145 1.01935 1.20973 0.94273 0.97588 1.01870 1.20991 0.99370 0.92146 1.01243 1.19707 0.93302 0.94562 0.99160 1.21117 0.96923 0.93070 0.92952 1.62078 1.54691 1.02989 1.05148 1.22615 0.93272 0.97294 0.99350 1.23153 0.97415 0.86274 1.02697 1.19349 0.93651 0.89603 0.79237 0.91890 1.86572 1.21146 1.82482 1.46037 1.21608 1.41587 0.92910 1.05149 0.92888 1.25011 0.94041 0.98386 0.95092 1.70077 1.37416 1.34759 1.07053 0.86757 0.78638 0.85584 0.77481 1.20258 1.21212 1.20172 1.19634 0.93041 0.94912 0.98013 1.20798 0.98880 0.93981 1.03075 0.91568 0.91111 0.91951 0.86671 0.86632 0.86735 0.95009 0.90266 0.97003 0.93153 0.88465 0.95981 0.91684 0.81756 0.92977 0.90148 0.92502 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.21 36.00 0.33 -0.85 16 2 C -0.09 -1.22 5.88 -104.63 -0.62 -1.84 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.88 16 4 C -0.13 -1.57 10.05 -39.58 -0.40 -1.96 16 5 C -0.12 -1.59 8.86 -39.59 -0.35 -1.94 16 6 C -0.07 -0.99 4.68 -104.63 -0.49 -1.48 16 7 C 0.09 1.35 4.36 -4.98 -0.02 1.33 16 8 N -0.53 -9.60 4.54 -244.37 -1.11 -10.71 16 9 C 0.02 0.40 8.97 60.07 0.54 0.94 16 10 C 0.03 0.65 4.74 -3.82 -0.02 0.64 16 11 C 0.24 6.01 3.04 -27.88 -0.08 5.92 16 12 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 13 O -0.56 -14.12 9.97 -35.23 -0.35 -14.47 16 14 C -0.57 -15.63 8.76 -34.44 -0.30 -15.93 16 15 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 17 N -0.86 -25.33 12.84 55.43 0.71 -24.62 16 18 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.06 -0.81 5.88 -104.62 -0.62 -1.42 16 23 C -0.11 -1.57 8.64 36.01 0.31 -1.26 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.75 6.80 -51.93 -0.35 0.40 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.11 1.38 8.00 -52.48 -0.42 0.96 16 30 H 0.03 0.47 7.86 -51.93 -0.41 0.06 16 31 H 0.08 1.19 6.20 -51.93 -0.32 0.87 16 32 H 0.01 0.19 7.92 -51.93 -0.41 -0.22 16 33 H 0.05 0.83 6.58 -51.93 -0.34 0.49 16 34 H 0.10 1.93 5.90 -51.93 -0.31 1.63 16 35 H 0.02 0.44 7.85 -51.93 -0.41 0.04 16 36 H 0.06 1.30 7.65 -51.93 -0.40 0.90 16 37 H 0.34 7.70 9.04 45.56 0.41 8.11 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.68 6.96 -51.93 -0.36 0.32 16 41 H 0.07 1.02 6.08 -51.93 -0.32 0.71 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -29.97 327.90 -8.73 -38.70 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.71 Total: 7.67 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.19 Total: -17.59 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.40 Total: -35.33 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.35 Total: -14.47 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.97 -8.73 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930539458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.213 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds