Wall clock time and date at job start Mon Mar 30 2020 00:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86805 * 119.99423 * 2 1 4 4 H 1.48501 * 109.47049 * 240.00194 * 3 2 1 5 5 H 1.48496 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46768 * 120.00515 * 3 2 1 7 7 C 1.38943 * 120.00417 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00398 * 186.68152 * 7 2 1 9 9 N 1.37102 * 120.00113 * 6.68756 * 7 2 1 10 10 C 1.34778 * 120.00127 * 43.96726 * 9 7 2 11 11 O 1.21296 * 119.99818 * 5.34475 * 10 9 7 12 12 C 1.50696 * 119.99948 * 185.34395 * 10 9 7 13 13 H 1.08999 * 108.69646 * 327.07998 * 12 10 9 14 14 C 1.51579 * 108.73383 * 85.29601 * 12 10 9 15 15 C 1.52691 * 111.47229 * 188.19302 * 14 12 10 16 16 C 1.53680 * 108.94709 * 268.95520 * 15 14 12 17 17 H 1.09000 * 116.32772 * 288.23103 * 16 15 14 18 18 C 1.53004 * 117.07426 * 140.76403 * 16 15 14 19 19 C 1.52998 * 60.31479 * 254.82718 * 18 16 15 20 20 H 1.08999 * 118.09829 * 251.24105 * 19 18 16 21 21 C 1.53681 * 117.08448 * 105.16084 * 19 18 16 22 22 C 1.51577 * 108.73060 * 208.98075 * 12 10 9 23 23 C 1.46499 * 119.99625 * 223.97652 * 9 7 2 24 24 C 1.52992 * 117.50483 * 12.72532 * 23 9 7 25 25 C 1.52997 * 60.00301 * 252.51557 * 24 23 9 26 26 H 0.96996 * 120.00396 * 4.99046 * 1 2 3 27 27 H 1.09005 * 109.07980 * 67.68106 * 14 12 10 28 28 H 1.09003 * 109.02724 * 308.67232 * 14 12 10 29 29 H 1.08995 * 109.55651 * 149.11618 * 15 14 12 30 30 H 1.08996 * 109.55951 * 28.79477 * 15 14 12 31 31 H 1.09006 * 117.46520 * 147.24523 * 18 16 15 32 32 H 1.08991 * 117.47131 * 2.41066 * 18 16 15 33 33 H 1.08996 * 109.56126 * 339.08857 * 21 19 18 34 34 H 1.09005 * 109.55375 * 99.40681 * 21 19 18 35 35 H 1.08996 * 109.08189 * 51.28634 * 22 12 10 36 36 H 1.08999 * 109.08124 * 292.30781 * 22 12 10 37 37 H 1.09006 * 115.54589 * 158.44133 * 23 9 7 38 38 H 1.09003 * 117.49866 * 0.02562 * 24 23 9 39 39 H 1.09003 * 117.49987 * 145.01878 * 24 23 9 40 40 H 1.09004 * 117.49333 * 252.51140 * 25 24 23 41 41 H 1.08992 * 117.50116 * 107.48924 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2032 -0.0005 8 1 3.0835 -1.2065 0.1083 9 7 1.3305 -2.3865 -0.1393 10 6 0.3537 -2.4992 -1.0611 11 8 0.1398 -1.5880 -1.8326 12 6 -0.4727 -3.7573 -1.1332 13 1 0.1539 -4.6036 -0.8518 14 6 -1.6150 -3.6468 -0.1430 15 6 -2.3754 -4.9650 -0.0174 16 6 -3.5302 -4.9734 -1.0313 17 1 -4.3706 -4.3148 -0.8123 18 6 -3.8176 -6.2940 -1.7486 19 6 -3.1188 -5.1596 -2.5008 20 1 -3.6796 -4.6344 -3.2739 21 6 -1.6100 -5.3110 -2.7505 22 6 -0.9377 -3.9530 -2.5626 23 6 1.6673 -3.5284 0.7144 24 6 2.5609 -3.2640 1.9279 25 6 3.1206 -4.0070 0.7131 26 1 -0.4850 0.8368 -0.0731 27 1 -2.3023 -2.8695 -0.4771 28 1 -1.2142 -3.3723 0.8328 29 1 -2.7753 -5.0608 0.9920 30 1 -1.7015 -5.7961 -0.2250 31 1 -4.8535 -6.5083 -2.0115 32 1 -3.2152 -7.1587 -1.4704 33 1 -1.1926 -6.0260 -2.0416 34 1 -1.4422 -5.6635 -3.7683 35 1 -0.0780 -3.8857 -3.2293 36 1 -1.6472 -3.1658 -2.8174 37 1 0.8886 -4.2841 0.8175 38 1 2.8979 -2.2404 2.0913 39 1 2.3700 -3.8457 2.8297 40 1 3.2979 -5.0776 0.8159 41 1 3.8260 -3.4723 0.0772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615813.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:22 Heat of formation + Delta-G solvation = 15.373760 kcal Electronic energy + Delta-G solvation = -21091.410911 eV Core-core repulsion = 18165.829939 eV Total energy + Delta-G solvation = -2925.580972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55595 -38.09599 -36.04238 -33.84780 -32.56925 -31.50702 -30.68474 -27.04097 -24.69296 -23.71391 -21.68201 -21.52374 -21.20252 -20.57691 -18.74674 -18.57543 -16.52112 -15.98483 -15.84069 -14.77549 -14.40497 -14.38270 -13.72031 -13.63107 -13.28478 -12.73963 -12.60833 -12.41590 -11.90753 -11.71426 -11.63640 -11.55302 -11.07153 -10.92394 -10.77178 -10.74774 -10.60262 -10.25104 -10.15745 -10.01792 -9.98608 -9.93893 -9.65485 -9.52228 -9.38777 -8.65465 -7.78628 -6.90460 -5.96600 -3.82604 3.33355 3.38882 3.40283 3.94266 4.22355 4.34846 4.74322 4.86175 4.89630 5.00724 5.10073 5.34222 5.39543 5.44885 5.55163 5.60771 5.66075 5.75786 5.81593 5.83953 5.86038 5.91986 6.00472 6.03997 6.12262 6.26780 6.28667 6.33565 6.38270 6.40227 6.54336 6.60640 6.71220 6.74439 6.84142 6.97237 7.00648 7.04172 7.66998 8.34910 9.17257 9.27938 9.76159 10.44526 11.07012 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.006645 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.534341 B = 4212.528412 C = 4785.960171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.060 3.940 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.335 4.335 8 H 0.074 0.926 9 N -0.436 5.436 10 C 0.491 3.509 11 O -0.525 6.525 12 C -0.096 4.096 13 H 0.066 0.934 14 C -0.097 4.097 15 C -0.087 4.087 16 C -0.145 4.145 17 H 0.101 0.899 18 C -0.182 4.182 19 C -0.147 4.147 20 H 0.101 0.899 21 C -0.087 4.087 22 C -0.093 4.093 23 C 0.078 3.922 24 C -0.181 4.181 25 C -0.209 4.209 26 H 0.262 0.738 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 -11.816 0.228 12.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.149 4.149 3 Si 0.738 3.262 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.463 4.463 8 H 0.091 0.909 9 N -0.157 5.157 10 C 0.278 3.722 11 O -0.401 6.401 12 C -0.118 4.118 13 H 0.084 0.916 14 C -0.135 4.135 15 C -0.124 4.124 16 C -0.163 4.163 17 H 0.119 0.881 18 C -0.218 4.218 19 C -0.165 4.165 20 H 0.119 0.881 21 C -0.125 4.125 22 C -0.131 4.131 23 C -0.029 4.029 24 C -0.219 4.219 25 C -0.248 4.248 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.083 -11.170 -0.135 11.894 hybrid contribution 0.366 0.839 0.127 0.924 sum -3.718 -10.331 -0.008 10.979 Atomic orbital electron populations 1.69842 1.06065 1.27252 1.43468 1.25251 0.95026 0.99058 0.95595 0.86299 0.79156 0.82355 0.78381 1.20225 1.21217 1.20344 1.18826 0.90773 0.82615 1.54079 0.90875 1.42801 1.34341 1.09062 1.29461 1.19797 0.82902 0.87803 0.81690 1.90498 1.67985 1.40677 1.40909 1.20768 0.96933 0.98066 0.95991 0.91574 1.20997 0.96668 0.96729 0.99085 1.21323 0.95345 0.98374 0.97390 1.22710 1.00351 0.99344 0.93930 0.88055 1.23093 1.00815 0.92710 1.05229 1.22700 0.96392 1.02290 0.95144 0.88069 1.21315 0.92308 0.97973 1.00884 1.20932 1.00338 0.96288 0.95580 1.21726 0.91614 0.93336 0.96238 1.23083 1.05181 1.02064 0.91528 1.23270 0.99766 0.98861 1.02873 0.92744 0.91378 0.91671 0.91994 0.91905 0.89478 0.89183 0.91915 0.92086 0.92289 0.91190 0.87562 0.87630 0.90018 0.89961 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.74 11.04 55.50 0.61 -24.13 16 2 C 0.06 1.70 4.75 -17.47 -0.08 1.62 16 3 Si 0.91 22.01 29.56 -169.99 -5.03 16.99 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.34 -9.23 7.66 -14.93 -0.11 -9.34 16 8 H 0.07 1.96 7.53 -52.48 -0.40 1.57 16 9 N -0.44 -10.95 2.89 -107.73 -0.31 -11.26 16 10 C 0.49 12.44 5.69 -10.99 -0.06 12.38 16 11 O -0.52 -15.60 13.82 5.54 0.08 -15.52 16 12 C -0.10 -1.86 1.29 -93.21 -0.12 -1.98 16 13 H 0.07 1.17 6.11 -51.93 -0.32 0.86 16 14 C -0.10 -1.76 4.63 -27.61 -0.13 -1.89 16 15 C -0.09 -1.22 5.42 -26.54 -0.14 -1.36 16 16 C -0.15 -1.92 5.68 -89.89 -0.51 -2.43 16 17 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 18 C -0.18 -2.06 9.78 -26.73 -0.26 -2.32 16 19 C -0.15 -1.93 5.68 -89.89 -0.51 -2.44 16 20 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 21 C -0.09 -1.21 5.42 -26.54 -0.14 -1.36 16 22 C -0.09 -1.67 4.30 -27.61 -0.12 -1.79 16 23 C 0.08 1.56 5.81 -67.93 -0.39 1.17 16 24 C -0.18 -3.32 9.84 -26.74 -0.26 -3.58 16 25 C -0.21 -3.67 10.16 -26.73 -0.27 -3.94 16 26 H 0.26 7.58 8.32 -40.82 -0.34 7.25 16 27 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16 28 H 0.06 1.28 7.73 -51.93 -0.40 0.88 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.06 0.83 6.17 -51.93 -0.32 0.51 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 36 H 0.07 1.39 7.68 -51.93 -0.40 0.99 16 37 H 0.11 1.91 5.92 -51.93 -0.31 1.60 16 38 H 0.11 2.17 7.03 -51.93 -0.37 1.80 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.72 8.08 -51.93 -0.42 1.30 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -31.65 316.49 -9.59 -41.24 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.59 Total: 5.17 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -3.13 Total: -17.27 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.30 Total: -35.38 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.65 -9.59 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615813.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.616 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds