Wall clock time and date at job start Mon Mar 30 2020 00:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46842 * 239.99729 * 3 2 1 5 5 H 1.48496 * 109.47100 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47199 * 119.99761 * 3 2 1 7 7 C 1.38945 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00083 * 160.49322 * 7 2 1 9 9 N 1.37094 * 120.00027 * 340.49137 * 7 2 1 10 10 C 1.34783 * 120.00289 * 317.61804 * 9 7 2 11 11 O 1.21297 * 119.99330 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00406 * 179.97438 * 10 9 7 13 13 H 1.09004 * 112.88382 * 51.85504 * 12 10 9 14 14 C 1.53962 * 113.66729 * 280.50463 * 12 10 9 15 15 C 1.53228 * 86.24682 * 218.96265 * 14 12 10 16 16 H 1.09003 * 111.34598 * 275.49365 * 15 14 12 17 17 C 1.50505 * 115.71239 * 147.24581 * 15 14 12 18 18 C 1.51638 * 114.39285 * 290.08713 * 17 15 14 19 19 C 1.52593 * 111.07281 * 313.09143 * 18 17 15 20 20 C 1.52973 * 108.83800 * 63.69736 * 19 18 17 21 21 C 1.52536 * 87.68073 * 26.88876 * 15 14 12 22 22 H 1.09000 * 113.95196 * 218.48762 * 21 15 14 23 23 C 1.46499 * 120.00109 * 137.62288 * 9 7 2 24 24 C 1.53005 * 117.50003 * 65.27353 * 23 9 7 25 25 C 1.53007 * 60.02943 * 252.47562 * 24 23 9 26 26 H 0.97004 * 119.99947 * 355.40721 * 1 2 3 27 27 H 1.09000 * 113.74481 * 333.29508 * 14 12 10 28 28 H 1.08994 * 113.75251 * 104.51843 * 14 12 10 29 29 H 1.09004 * 108.50472 * 51.36444 * 17 15 14 30 30 H 1.09005 * 108.49992 * 168.97563 * 17 15 14 31 31 H 1.08995 * 109.15218 * 73.50036 * 18 17 15 32 32 H 1.09003 * 109.15684 * 192.67611 * 18 17 15 33 33 H 1.09007 * 109.57263 * 183.50156 * 19 18 17 34 34 H 1.09005 * 109.57488 * 303.75558 * 19 18 17 35 35 H 1.08997 * 109.51877 * 56.25856 * 20 19 18 36 36 H 1.09003 * 109.52048 * 176.36782 * 20 19 18 37 37 H 1.09000 * 115.55142 * 210.94229 * 23 9 7 38 38 H 1.09001 * 117.49659 * 359.97066 * 24 23 9 39 39 H 1.08995 * 117.50180 * 144.97772 * 24 23 9 40 40 H 1.08996 * 117.49926 * 107.50157 * 25 24 23 41 41 H 1.08997 * 117.49669 * 252.51951 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0424 -1.2303 -0.3118 9 7 1.3824 -2.3563 0.3975 10 6 0.5767 -2.3479 1.4780 11 8 0.4056 -1.3200 2.0988 12 6 -0.1124 -3.6152 1.9141 13 1 0.5746 -4.4539 2.0273 14 6 -1.3676 -3.9516 1.0886 15 6 -1.9943 -4.4024 2.4122 16 1 -1.7236 -5.4313 2.6493 17 6 -3.4785 -4.1872 2.5387 18 6 -3.8926 -2.7333 2.6575 19 6 -3.0304 -1.9991 3.6803 20 6 -1.5825 -1.9855 3.1868 21 6 -1.0613 -3.4223 3.1162 22 1 -0.6619 -3.7922 4.0605 23 6 1.5887 -3.5977 -0.3526 24 6 2.9962 -4.1977 -0.3522 25 6 2.4517 -3.5265 -1.6148 26 1 -0.4850 0.8374 0.0673 27 1 -1.8507 -3.0790 0.6489 28 1 -1.2189 -4.7606 0.3734 29 1 -3.9660 -4.6152 1.6627 30 1 -3.8309 -4.7182 3.4230 31 1 -3.7851 -2.2503 1.6864 32 1 -4.9364 -2.6829 2.9675 33 1 -3.3880 -0.9754 3.7916 34 1 -3.0864 -2.5120 4.6405 35 1 -1.5397 -1.5335 2.1959 36 1 -0.9678 -1.4079 3.8773 37 1 0.7466 -4.2897 -0.3571 38 1 3.7687 -3.6686 0.2058 39 1 3.0800 -5.2844 -0.3562 40 1 2.8661 -2.5560 -1.8874 41 1 2.1771 -4.1718 -2.4492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930615821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:18 Heat of formation + Delta-G solvation = 17.093670 kcal Electronic energy + Delta-G solvation = -21461.599124 eV Core-core repulsion = 18536.092733 eV Total energy + Delta-G solvation = -2925.506391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.41147 -37.87908 -35.85992 -33.78431 -32.71501 -30.80123 -30.42034 -26.70491 -24.95006 -23.98277 -22.05628 -21.72180 -21.33593 -20.62282 -18.79710 -17.31282 -16.37980 -15.94396 -15.40672 -14.73520 -14.39956 -14.21831 -14.09705 -13.58949 -13.24417 -13.11451 -12.60822 -12.04541 -11.98010 -11.65839 -11.33181 -11.11607 -11.05247 -10.89698 -10.82196 -10.76931 -10.66735 -10.43767 -10.21416 -9.94056 -9.81403 -9.78202 -9.55987 -9.42819 -9.13421 -8.60407 -7.57611 -6.96199 -6.03153 -3.79222 3.34778 3.41351 3.45244 4.18229 4.34169 4.78533 4.87917 4.96209 4.99878 5.21777 5.32390 5.45454 5.50071 5.56929 5.65457 5.65901 5.82215 5.84924 5.86987 6.02131 6.06805 6.17519 6.23298 6.24680 6.26615 6.29143 6.32946 6.42133 6.53019 6.58048 6.63993 6.70722 6.75274 6.81090 6.95827 7.04231 7.19383 7.54794 7.67465 8.33843 9.15074 9.26008 9.76162 10.40909 11.03420 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.008493 C = 0.006480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.425604 B = 3296.103148 C = 4320.043536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.346 4.346 8 H 0.074 0.926 9 N -0.429 5.429 10 C 0.494 3.506 11 O -0.523 6.523 12 C -0.131 4.131 13 H 0.089 0.911 14 C -0.114 4.114 15 C -0.105 4.105 16 H 0.074 0.926 17 C -0.098 4.098 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.089 4.089 21 C -0.074 4.074 22 H 0.064 0.936 23 C 0.079 3.921 24 C -0.210 4.210 25 C -0.177 4.177 26 H 0.262 0.738 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -9.075 2.296 10.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.135 4.135 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.473 4.473 8 H 0.092 0.908 9 N -0.150 5.150 10 C 0.282 3.718 11 O -0.401 6.401 12 C -0.153 4.153 13 H 0.108 0.892 14 C -0.152 4.152 15 C -0.124 4.124 16 H 0.092 0.908 17 C -0.136 4.136 18 C -0.152 4.152 19 C -0.160 4.160 20 C -0.126 4.126 21 C -0.092 4.092 22 H 0.083 0.917 23 C -0.027 4.027 24 C -0.249 4.249 25 C -0.214 4.214 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.323 -8.398 2.558 9.786 hybrid contribution 0.518 0.576 -0.132 0.786 sum -3.805 -7.822 2.426 9.030 Atomic orbital electron populations 1.69871 1.06333 1.27516 1.42610 1.25081 0.94700 0.98978 0.94713 0.86408 0.79440 0.82659 0.78302 1.20559 1.21316 1.20199 1.18803 0.94599 0.84759 1.49091 0.90822 1.42836 1.43805 1.05750 1.22566 1.19574 0.82482 0.88705 0.81072 1.90517 1.61423 1.33618 1.54545 1.22870 0.95953 0.98318 0.98144 0.89235 1.22815 0.95946 1.01033 0.95431 1.21640 0.94175 0.98807 0.97744 0.90786 1.20494 0.95471 0.96809 1.00822 1.21122 0.98263 0.95636 1.00212 1.21543 0.97556 0.99164 0.97756 1.21548 0.92346 0.93970 1.04747 1.22085 0.94936 0.96332 0.95892 0.91739 1.21697 0.92219 0.91420 0.97380 1.23313 1.00108 0.98619 1.02909 1.23069 1.04827 1.02524 0.91015 0.92742 0.89245 0.92269 0.92580 0.93134 0.92066 0.93074 0.92740 0.93274 0.88347 0.91781 0.87950 0.89203 0.89950 0.87610 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.01 11.66 55.50 0.65 -23.37 16 2 C 0.08 2.11 4.34 -17.47 -0.08 2.03 16 3 Si 0.90 22.01 29.60 -169.99 -5.03 16.98 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.35 -9.41 8.01 -14.94 -0.12 -9.53 16 8 H 0.07 1.96 7.18 -52.48 -0.38 1.59 16 9 N -0.43 -10.63 2.85 -107.69 -0.31 -10.94 16 10 C 0.49 12.16 6.01 -10.98 -0.07 12.09 16 11 O -0.52 -14.58 10.37 5.54 0.06 -14.52 16 12 C -0.13 -2.53 2.81 -90.62 -0.25 -2.78 16 13 H 0.09 1.58 7.98 -51.93 -0.41 1.17 16 14 C -0.11 -1.98 6.12 -26.11 -0.16 -2.14 16 15 C -0.11 -1.59 3.63 -92.05 -0.33 -1.92 16 16 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 17 C -0.10 -1.35 5.50 -28.67 -0.16 -1.51 16 18 C -0.11 -1.69 5.75 -27.63 -0.16 -1.85 16 19 C -0.12 -1.98 5.90 -26.95 -0.16 -2.14 16 20 C -0.09 -1.75 3.66 -26.74 -0.10 -1.85 16 21 C -0.07 -1.31 4.20 -90.14 -0.38 -1.68 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 23 C 0.08 1.60 5.79 -67.89 -0.39 1.21 16 24 C -0.21 -3.67 10.35 -26.73 -0.28 -3.95 16 25 C -0.18 -3.25 9.80 -26.69 -0.26 -3.51 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.09 1.80 7.37 -51.93 -0.38 1.42 16 28 H 0.06 0.91 7.56 -51.93 -0.39 0.52 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.10 2.35 5.40 -51.93 -0.28 2.07 16 36 H 0.06 1.38 7.56 -51.93 -0.39 0.99 16 37 H 0.10 1.88 6.13 -51.93 -0.32 1.57 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.11 2.15 6.69 -51.93 -0.35 1.81 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -29.97 311.19 -9.52 -39.49 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.68 Total: 5.20 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.89 Total: -17.54 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.34 Total: -34.30 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.06 Total: -14.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.97 -9.52 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930615821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.581 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds