Wall clock time and date at job start Mon Mar 30 2020 00:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.50699 * 109.47446 * 120.00300 * 2 1 3 5 5 C 1.38327 * 119.91228 * 120.00074 * 4 2 1 6 6 C 1.38056 * 120.08831 * 180.02562 * 5 4 2 7 7 C 1.39085 * 119.90826 * 0.02562 * 6 5 4 8 8 N 1.39297 * 120.08517 * 180.02562 * 7 6 5 9 9 C 1.36846 * 120.00001 * 354.13496 * 8 7 6 10 10 H 1.08005 * 120.00343 * 132.38269 * 9 8 7 11 11 C 1.38793 * 120.00006 * 312.37323 * 9 8 7 12 12 N 1.31592 * 119.99932 * 163.51009 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 343.51756 * 11 9 8 14 14 H 1.48489 * 109.47307 * 91.97441 * 13 11 9 15 15 H 1.48505 * 109.46912 * 211.97717 * 13 11 9 16 16 H 1.48499 * 109.47119 * 331.97143 * 13 11 9 17 17 C 1.46496 * 119.99655 * 174.13054 * 8 7 6 18 18 C 1.53009 * 109.47101 * 270.00023 * 17 8 7 19 19 C 1.53000 * 109.46878 * 180.02562 * 18 17 8 20 20 O 1.42901 * 109.46903 * 180.02562 * 19 18 17 21 21 C 1.39078 * 119.82356 * 0.27378 * 7 6 5 22 22 C 1.38060 * 119.90717 * 359.47130 * 21 7 6 23 23 H 1.08993 * 109.47145 * 299.99573 * 1 2 3 24 24 H 1.08995 * 109.46947 * 60.00242 * 1 2 3 25 25 H 1.09007 * 109.46561 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47552 * 240.00516 * 2 1 3 27 27 H 1.09000 * 109.47434 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47523 * 300.00133 * 3 2 1 29 29 H 1.09006 * 109.47071 * 60.00490 * 3 2 1 30 30 H 1.07999 * 119.95535 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.04466 * 179.97438 * 6 5 4 32 32 H 0.97002 * 120.00098 * 180.02562 * 12 11 9 33 33 H 1.08994 * 109.47204 * 30.00101 * 17 8 7 34 34 H 1.09002 * 109.47187 * 150.00406 * 17 8 7 35 35 H 1.08994 * 109.47155 * 300.00108 * 18 17 8 36 36 H 1.08994 * 109.46940 * 60.00480 * 18 17 8 37 37 H 1.09004 * 109.46942 * 299.99900 * 19 18 17 38 38 H 1.08998 * 109.47723 * 59.99776 * 19 18 17 39 39 H 0.96702 * 113.99955 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.04785 * 179.72612 * 21 7 6 41 41 H 1.07997 * 119.95195 * 180.23117 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8276 -1.8349 1.1013 6 6 3.2894 -2.4889 2.2260 7 6 2.9537 -2.0159 3.4901 8 7 3.4181 -2.6726 4.6274 9 6 4.1039 -3.8505 4.5053 10 1 5.0291 -3.9950 5.0436 11 6 3.6107 -4.8595 3.6899 12 7 4.3981 -5.8433 3.3110 13 14 1.8289 -4.8207 3.1300 14 1 1.7353 -4.1182 1.8251 15 1 1.3265 -6.2102 2.9814 16 1 1.0087 -4.1030 4.1386 17 6 3.1722 -2.1022 5.9542 18 6 4.3273 -1.1725 6.3317 19 6 4.0708 -0.5773 7.7176 20 8 5.1493 0.2915 8.0699 21 6 2.1488 -0.8887 3.6156 22 6 1.6954 -0.2374 2.4859 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8935 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.0868 -2.2022 0.1193 31 1 3.9099 -3.3670 2.1243 32 1 4.0535 -6.5483 2.7408 33 1 2.2406 -1.5367 5.9396 34 1 3.0982 -2.9057 6.6871 35 1 5.2590 -1.7380 6.3462 36 1 4.4013 -0.3691 5.5989 37 1 3.1390 -0.0119 7.7034 38 1 3.9970 -1.3809 8.4503 39 1 5.0536 0.7049 8.9388 40 1 1.8822 -0.5209 4.5954 41 1 1.0735 0.6402 2.5825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932449837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:04 Heat of formation + Delta-G solvation = -26.751468 kcal Electronic energy + Delta-G solvation = -20297.024265 eV Core-core repulsion = 17369.616606 eV Total energy + Delta-G solvation = -2927.407659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.14033 -37.21606 -36.41214 -33.97007 -32.77591 -31.01715 -29.96254 -27.83050 -26.85289 -25.77324 -23.66948 -21.72913 -21.63163 -20.46560 -19.20085 -17.96120 -17.22419 -15.70337 -15.45966 -15.18838 -14.94256 -14.25356 -13.69469 -13.51130 -13.38959 -13.19575 -13.04536 -12.75072 -12.49250 -12.19994 -12.11213 -12.00802 -11.79669 -11.60851 -10.97595 -10.90482 -10.81385 -10.63715 -10.45416 -10.32724 -10.11442 -9.91580 -9.80062 -9.71463 -9.03572 -8.51565 -7.83036 -6.49119 -6.26493 -3.99638 2.39019 2.52304 3.31354 3.39556 3.45593 4.22671 4.29275 4.67379 4.78158 5.03357 5.22362 5.25900 5.27709 5.42423 5.58242 5.67552 5.71873 5.81579 5.84690 5.88403 5.94501 6.03885 6.07623 6.12503 6.15207 6.26341 6.40091 6.45607 6.53918 6.54912 6.74077 6.76344 6.83474 7.01360 7.36931 7.45490 7.61547 7.71377 7.73062 7.96667 8.17041 8.71381 9.24991 9.54669 10.69426 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.008180 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.572010 B = 3422.270815 C = 4999.306358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.139 4.139 4 C -0.182 4.182 5 C -0.071 4.071 6 C -0.192 4.192 7 C 0.214 3.786 8 N -0.479 5.479 9 C -0.326 4.326 10 H 0.093 0.907 11 C 0.071 3.929 12 N -0.871 5.871 13 Si 0.870 3.130 14 H -0.246 1.246 15 H -0.296 1.296 16 H -0.269 1.269 17 C 0.122 3.878 18 C -0.134 4.134 19 C 0.079 3.921 20 O -0.575 6.575 21 C -0.235 4.235 22 C -0.066 4.066 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.274 0.726 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.373 0.627 40 H 0.108 0.892 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.745 10.834 0.960 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 C -0.197 4.197 4 C -0.185 4.185 5 C -0.090 4.090 6 C -0.215 4.215 7 C 0.105 3.895 8 N -0.172 5.172 9 C -0.453 4.453 10 H 0.111 0.889 11 C -0.136 4.136 12 N -0.506 5.506 13 Si 0.696 3.304 14 H -0.170 1.170 15 H -0.224 1.224 16 H -0.193 1.193 17 C -0.003 4.003 18 C -0.173 4.173 19 C 0.001 3.999 20 O -0.380 6.380 21 C -0.258 4.258 22 C -0.085 4.085 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.219 0.781 40 H 0.126 0.874 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.392 10.298 0.491 11.635 hybrid contribution -1.081 -0.098 0.365 1.145 sum -6.474 10.201 0.856 12.112 Atomic orbital electron populations 1.21851 0.95726 1.01459 1.00773 1.19836 0.94785 0.95251 0.96051 1.21838 1.01092 0.96003 1.00740 1.19183 1.06207 0.99469 0.93638 1.20626 0.96632 0.94508 0.97260 1.20913 1.05682 1.04180 0.90754 1.18126 0.92924 0.90397 0.88093 1.42393 1.53784 1.20712 1.00329 1.18822 1.05385 0.89674 1.31462 0.88933 1.25571 0.98063 0.94397 0.95595 1.69826 1.35522 1.12367 1.32886 0.87151 0.84932 0.76688 0.81635 1.16999 1.22358 1.19336 1.21308 0.95659 0.96305 0.87019 1.21952 1.01194 0.99667 0.94519 1.22172 0.88592 0.92022 0.97136 1.86527 1.47142 1.64470 1.39834 1.20456 1.07176 1.00229 0.97982 1.20358 0.98342 0.98031 0.91790 0.92877 0.93500 0.92926 0.91673 0.92793 0.93557 0.92897 0.87871 0.84671 0.91612 0.92345 0.91059 0.90870 0.91368 0.94005 0.93740 0.78121 0.87423 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.00 37.16 0.33 -1.55 16 2 C -0.04 -0.61 3.09 -91.77 -0.28 -0.89 16 3 C -0.14 -1.82 9.01 37.16 0.33 -1.48 16 4 C -0.18 -3.37 4.79 -104.55 -0.50 -3.87 16 5 C -0.07 -1.47 9.27 -39.62 -0.37 -1.84 16 6 C -0.19 -4.54 5.79 -39.33 -0.23 -4.77 16 7 C 0.21 4.94 4.78 -83.84 -0.40 4.54 16 8 N -0.48 -11.26 2.15 -113.13 -0.24 -11.50 16 9 C -0.33 -8.71 9.28 -15.11 -0.14 -8.85 16 10 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 11 C 0.07 1.92 3.83 -17.45 -0.07 1.86 16 12 N -0.87 -24.84 13.97 55.49 0.77 -24.07 16 13 Si 0.87 21.63 24.63 -169.99 -4.19 17.45 16 14 H -0.25 -6.00 5.61 56.52 0.32 -5.69 16 15 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 C 0.12 2.33 5.26 -4.04 -0.02 2.30 16 18 C -0.13 -2.36 5.91 -26.73 -0.16 -2.52 16 19 C 0.08 1.09 7.05 37.16 0.26 1.35 16 20 O -0.58 -7.98 13.66 -35.23 -0.48 -8.46 16 21 C -0.23 -4.76 9.26 -39.34 -0.36 -5.13 16 22 C -0.07 -1.23 8.70 -39.61 -0.34 -1.57 16 23 H 0.05 0.69 7.38 -51.93 -0.38 0.31 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.06 0.94 7.87 -51.93 -0.41 0.54 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.68 7.39 -51.93 -0.38 0.29 16 30 H 0.10 1.95 7.94 -52.49 -0.42 1.53 16 31 H 0.14 3.52 5.32 -52.49 -0.28 3.24 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.06 1.02 5.97 -51.93 -0.31 0.71 16 34 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 35 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.37 3.12 9.12 45.56 0.42 3.54 16 40 H 0.11 1.97 6.02 -52.49 -0.32 1.66 16 41 H 0.10 1.62 7.09 -52.49 -0.37 1.24 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -29.97 322.88 -7.11 -37.08 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -5.90 Total: 7.06 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.94 Total: -22.42 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.53 Total: -35.57 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.48 Total: -8.46 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.19 Total: 17.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.97 -7.11 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932449837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.328 kcal (2) G-P(sol) polarization free energy of solvation -29.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds