Wall clock time and date at job start Mon Mar 30 2020 00:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46959 * 2 1 4 4 C 1.50699 * 109.47446 * 120.00300 * 2 1 3 5 5 C 1.38327 * 119.91228 * 120.00074 * 4 2 1 6 6 C 1.38056 * 120.08831 * 180.02562 * 5 4 2 7 7 C 1.39085 * 119.90826 * 0.02562 * 6 5 4 8 8 N 1.39297 * 120.08517 * 180.02562 * 7 6 5 9 9 C 1.36846 * 120.00001 * 354.13496 * 8 7 6 10 10 H 1.08005 * 120.00343 * 132.38269 * 9 8 7 11 11 C 1.38793 * 120.00006 * 312.37323 * 9 8 7 12 12 N 1.31592 * 119.99932 * 163.51009 * 11 9 8 13 13 Si 1.86802 * 119.99990 * 343.51756 * 11 9 8 14 14 H 1.48489 * 109.47307 * 91.97441 * 13 11 9 15 15 H 1.48505 * 109.46912 * 211.97717 * 13 11 9 16 16 H 1.48499 * 109.47119 * 331.97143 * 13 11 9 17 17 C 1.46496 * 119.99655 * 174.13054 * 8 7 6 18 18 C 1.53009 * 109.47101 * 270.00023 * 17 8 7 19 19 C 1.53000 * 109.46878 * 180.02562 * 18 17 8 20 20 O 1.42901 * 109.46903 * 180.02562 * 19 18 17 21 21 C 1.39078 * 119.82356 * 0.27378 * 7 6 5 22 22 C 1.38060 * 119.90717 * 359.47130 * 21 7 6 23 23 H 1.08993 * 109.47145 * 299.99573 * 1 2 3 24 24 H 1.08995 * 109.46947 * 60.00242 * 1 2 3 25 25 H 1.09007 * 109.46561 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47552 * 240.00516 * 2 1 3 27 27 H 1.09000 * 109.47434 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47523 * 300.00133 * 3 2 1 29 29 H 1.09006 * 109.47071 * 60.00490 * 3 2 1 30 30 H 1.07999 * 119.95535 * 359.97438 * 5 4 2 31 31 H 1.07997 * 120.04466 * 179.97438 * 6 5 4 32 32 H 0.97002 * 120.00098 * 180.02562 * 12 11 9 33 33 H 1.08994 * 109.47204 * 30.00101 * 17 8 7 34 34 H 1.09002 * 109.47187 * 150.00406 * 17 8 7 35 35 H 1.08994 * 109.47155 * 300.00108 * 18 17 8 36 36 H 1.08994 * 109.46940 * 60.00480 * 18 17 8 37 37 H 1.09004 * 109.46942 * 299.99900 * 19 18 17 38 38 H 1.08998 * 109.47723 * 59.99776 * 19 18 17 39 39 H 0.96702 * 113.99955 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.04785 * 179.72612 * 21 7 6 41 41 H 1.07997 * 119.95195 * 180.23117 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8276 -1.8349 1.1013 6 6 3.2894 -2.4889 2.2260 7 6 2.9537 -2.0159 3.4901 8 7 3.4181 -2.6726 4.6274 9 6 4.1039 -3.8505 4.5053 10 1 5.0291 -3.9950 5.0436 11 6 3.6107 -4.8595 3.6899 12 7 4.3981 -5.8433 3.3110 13 14 1.8289 -4.8207 3.1300 14 1 1.7353 -4.1182 1.8251 15 1 1.3265 -6.2102 2.9814 16 1 1.0087 -4.1030 4.1386 17 6 3.1722 -2.1022 5.9542 18 6 4.3273 -1.1725 6.3317 19 6 4.0708 -0.5773 7.7176 20 8 5.1493 0.2915 8.0699 21 6 2.1488 -0.8887 3.6156 22 6 1.6954 -0.2374 2.4859 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8935 -0.5138 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.0868 -2.2022 0.1193 31 1 3.9099 -3.3670 2.1243 32 1 4.0535 -6.5483 2.7408 33 1 2.2406 -1.5367 5.9396 34 1 3.0982 -2.9057 6.6871 35 1 5.2590 -1.7380 6.3462 36 1 4.4013 -0.3691 5.5989 37 1 3.1390 -0.0119 7.7034 38 1 3.9970 -1.3809 8.4503 39 1 5.0536 0.7049 8.9388 40 1 1.8822 -0.5209 4.5954 41 1 1.0735 0.6402 2.5825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932449837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:04 Heat of formation + Delta-G solvation = -46.015322 kcal Electronic energy + Delta-G solvation = -20297.859608 eV Core-core repulsion = 17369.616606 eV Total energy + Delta-G solvation = -2928.243002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76580 -38.56506 -37.68124 -35.33566 -34.64547 -32.59239 -31.59060 -29.38865 -27.85516 -27.42980 -25.20911 -23.32756 -23.03064 -21.96831 -20.67391 -19.79452 -18.33418 -17.37958 -17.18626 -16.51517 -16.40542 -15.70619 -15.29271 -15.05004 -14.80546 -14.67638 -14.47082 -14.32406 -13.98149 -13.73988 -13.55147 -13.35305 -13.22964 -12.92733 -12.73517 -12.36204 -12.11051 -12.03620 -11.93327 -11.85692 -11.76781 -11.40742 -11.27550 -10.88435 -10.85112 -10.33406 -9.49312 -8.52770 -8.09386 -6.06096 0.73213 0.91243 1.31949 1.39014 1.42643 2.25829 2.74720 2.88968 3.22467 3.51455 3.94648 4.01777 4.08760 4.25261 4.30443 4.40689 4.46073 4.48540 4.50893 4.62810 4.73228 4.75439 4.79094 4.90959 4.91569 5.08853 5.09228 5.13905 5.18639 5.24865 5.31878 5.37051 5.47397 5.52376 5.69163 5.73551 5.82825 6.05418 6.09118 6.34100 6.82987 6.95215 7.31755 7.61593 8.64844 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.008180 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.572010 B = 3422.270815 C = 4999.306358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.136 4.136 4 C -0.167 4.167 5 C -0.084 4.084 6 C -0.222 4.222 7 C 0.191 3.809 8 N -0.501 5.501 9 C -0.320 4.320 10 H 0.055 0.945 11 C 0.034 3.966 12 N -0.917 5.917 13 Si 0.926 3.074 14 H -0.243 1.243 15 H -0.299 1.299 16 H -0.269 1.269 17 C 0.122 3.878 18 C -0.126 4.126 19 C 0.087 3.913 20 O -0.597 6.597 21 C -0.230 4.230 22 C -0.063 4.063 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.275 0.725 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.398 0.602 40 H 0.131 0.869 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.572 14.122 0.747 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 C -0.193 4.193 4 C -0.170 4.170 5 C -0.102 4.102 6 C -0.246 4.246 7 C 0.084 3.916 8 N -0.197 5.197 9 C -0.448 4.448 10 H 0.072 0.928 11 C -0.168 4.168 12 N -0.554 5.554 13 Si 0.752 3.248 14 H -0.167 1.167 15 H -0.227 1.227 16 H -0.193 1.193 17 C -0.002 4.002 18 C -0.165 4.165 19 C 0.009 3.991 20 O -0.406 6.406 21 C -0.253 4.253 22 C -0.081 4.081 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.248 0.752 40 H 0.149 0.851 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.234 13.634 0.290 15.930 hybrid contribution -0.154 -0.922 0.350 0.998 sum -8.388 12.712 0.641 15.244 Atomic orbital electron populations 1.21827 0.94033 1.01229 1.02459 1.19948 0.96116 0.96079 0.94086 1.21803 1.00479 0.94669 1.02357 1.19687 1.03721 0.97973 0.95648 1.20871 0.97098 0.95361 0.96917 1.20799 1.07063 1.04246 0.92469 1.18392 0.93817 0.91739 0.87616 1.42419 1.54850 1.20317 1.02091 1.18564 1.04457 0.91153 1.30671 0.92779 1.26053 1.00795 0.94104 0.95885 1.69914 1.36998 1.13668 1.34841 0.86257 0.81230 0.76149 0.81197 1.16709 1.22674 1.19310 1.21420 0.97170 0.96624 0.84943 1.21801 0.99117 0.98554 0.97016 1.22044 0.89505 0.92851 0.94727 1.86455 1.47460 1.64684 1.41994 1.20801 1.05709 0.98843 0.99959 1.20804 0.97773 0.98637 0.90930 0.92128 0.90989 0.94139 0.91489 0.93807 0.91103 0.92205 0.86875 0.88309 0.91595 0.89741 0.91150 0.94277 0.92772 0.91208 0.92361 0.75204 0.85091 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.00 71.98 0.65 -2.41 16 2 C -0.04 -1.13 3.09 -11.54 -0.04 -1.17 16 3 C -0.14 -2.94 9.01 71.98 0.65 -2.29 16 4 C -0.17 -5.71 4.79 -19.82 -0.09 -5.80 16 5 C -0.08 -3.41 9.27 22.25 0.21 -3.20 16 6 C -0.22 -10.69 5.79 22.43 0.13 -10.56 16 7 C 0.19 8.78 4.78 38.36 0.18 8.97 16 8 N -0.50 -24.00 2.15 -511.84 -1.10 -25.10 16 9 C -0.32 -18.06 9.28 84.04 0.78 -17.28 16 10 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 11 C 0.03 1.95 3.83 84.86 0.33 2.28 16 12 N -0.92 -55.26 13.97 21.65 0.30 -54.96 16 13 Si 0.93 46.18 24.63 68.60 1.69 47.87 16 14 H -0.24 -11.83 5.61 99.48 0.56 -11.27 16 15 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 16 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 17 C 0.12 4.60 5.26 86.38 0.45 5.05 16 18 C -0.13 -4.41 5.91 30.60 0.18 -4.23 16 19 C 0.09 2.20 7.05 71.98 0.51 2.71 16 20 O -0.60 -15.40 13.66 -148.98 -2.03 -17.43 16 21 C -0.23 -8.69 9.26 22.43 0.21 -8.49 16 22 C -0.06 -2.08 8.70 22.25 0.19 -1.88 16 23 H 0.06 1.25 7.38 -2.39 -0.02 1.24 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.07 1.72 7.87 -2.38 -0.02 1.71 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.22 7.39 -2.38 -0.02 1.20 16 30 H 0.11 4.24 7.94 -2.91 -0.02 4.22 16 31 H 0.10 5.45 5.32 -2.91 -0.02 5.43 16 32 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 33 H 0.08 2.71 5.97 -2.39 -0.01 2.70 16 34 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.40 5.59 9.12 -74.06 -0.68 4.92 16 40 H 0.13 4.28 6.02 -2.91 -0.02 4.26 16 41 H 0.14 3.60 7.09 -2.91 -0.02 3.58 16 Total: -1.00 -68.47 322.88 3.37 -65.10 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.18 Total: 22.84 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.33 Total: -38.32 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -0.80 Total: -80.06 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -2.03 Total: -17.43 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.69 Total: 47.87 kcal Total: -68.47 3.37 -65.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932449837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.082 kcal (2) G-P(sol) polarization free energy of solvation -68.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds