Wall clock time and date at job start Sun Mar 29 2020 23:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48500 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47334 * 299.99931 * 3 2 1 6 6 H 1.48501 * 109.47070 * 60.00070 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00086 * 163.29150 * 7 2 1 9 9 C 1.50702 * 120.00115 * 343.29836 * 7 2 1 10 10 C 1.52990 * 115.54738 * 324.26080 * 9 7 2 11 11 N 1.46902 * 109.47634 * 298.01746 * 10 9 7 12 12 C 1.46895 * 111.00565 * 175.54168 * 11 10 9 13 13 C 1.55660 * 120.70568 * 9.11837 * 12 11 10 14 14 C 1.53003 * 60.15940 * 248.46442 * 13 12 11 15 15 H 1.09003 * 119.83448 * 112.76616 * 14 13 12 16 16 C 1.54554 * 118.00913 * 268.98620 * 14 13 12 17 17 O 1.44630 * 104.97972 * 87.95229 * 16 14 13 18 18 C 1.43346 * 105.21886 * 320.74367 * 17 16 14 19 19 C 1.52821 * 115.68253 * 269.58110 * 18 17 16 20 20 C 1.53956 * 86.78791 * 267.12753 * 19 18 17 21 21 C 1.52794 * 115.72789 * 168.60292 * 18 17 16 22 22 C 1.52992 * 117.49772 * 109.93173 * 9 7 2 23 23 C 1.52999 * 117.49765 * 178.59264 * 9 7 2 24 24 H 0.96999 * 120.00386 * 5.03251 * 1 2 3 25 25 H 1.08999 * 109.47171 * 178.01829 * 10 9 7 26 26 H 1.09005 * 109.47365 * 58.01896 * 10 9 7 27 27 H 1.00901 * 110.99671 * 51.58553 * 11 10 9 28 28 H 1.08999 * 117.23775 * 140.89158 * 13 12 11 29 29 H 1.09005 * 117.96095 * 355.71252 * 13 12 11 30 30 H 1.08998 * 110.33693 * 206.82954 * 16 14 13 31 31 H 1.09002 * 110.33984 * 329.07978 * 16 14 13 32 32 H 1.09000 * 113.66833 * 21.60209 * 19 18 17 33 33 H 1.09002 * 113.66005 * 152.65520 * 19 18 17 34 34 H 1.08996 * 113.58525 * 220.70241 * 20 19 18 35 35 H 1.08991 * 113.58421 * 89.88282 * 20 19 18 36 36 H 1.08999 * 113.66074 * 207.30730 * 21 18 17 37 37 H 1.08993 * 113.66547 * 338.35464 * 21 18 17 38 38 H 1.09004 * 117.49888 * 214.99994 * 22 9 7 39 39 H 1.09000 * 117.50358 * 0.02629 * 22 9 7 40 40 H 1.08997 * 117.50036 * 359.97438 * 23 9 7 41 41 H 1.08999 * 117.49828 * 144.97631 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0503 -1.2139 -0.2684 9 6 1.2987 -2.4715 0.3762 10 6 0.2405 -2.3425 1.4736 11 7 0.8768 -1.8853 2.7162 12 6 -0.1247 -1.6484 3.7644 13 6 -1.6063 -2.0801 3.5602 14 6 -1.2464 -0.5939 3.6104 15 1 -1.3520 0.0202 2.7160 16 6 -1.2849 0.1163 4.9825 17 8 0.0318 -0.0862 5.5454 18 6 0.3883 -1.4296 5.1950 19 6 -0.0076 -2.5051 6.2060 20 6 1.3949 -2.3260 6.8153 21 6 1.8476 -1.8130 5.4361 22 6 1.0426 -3.4903 -0.7360 23 6 2.1098 -3.7678 0.3257 24 1 -0.4850 0.8368 -0.0737 25 1 -0.2291 -3.3117 1.6411 26 1 -0.5160 -1.6205 1.1658 27 1 1.4335 -1.0595 2.5547 28 1 -2.1267 -2.5000 4.4210 29 1 -1.8889 -2.4958 2.5930 30 1 -1.4820 1.1805 4.8529 31 1 -2.0437 -0.3352 5.6217 32 1 -0.8158 -2.2031 6.8721 33 1 -0.1688 -3.4866 5.7600 34 1 1.8662 -3.2642 7.1079 35 1 1.4369 -1.5684 7.5977 36 1 2.2084 -2.5998 4.7736 37 1 2.5218 -0.9582 5.4872 38 1 0.1201 -4.0689 -0.6859 39 1 1.3849 -3.2370 -1.7394 40 1 3.1537 -3.6967 0.0204 41 1 1.8897 -4.5286 1.0745 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933386399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:48:03 Heat of formation + Delta-G solvation = 44.161030 kcal Electronic energy + Delta-G solvation = -21247.861602 eV Core-core repulsion = 18323.528940 eV Total energy + Delta-G solvation = -2924.332662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.74170 -37.10610 -36.18094 -34.74312 -32.24745 -31.27721 -26.94769 -25.77537 -25.54065 -25.13947 -23.59792 -21.12955 -21.01373 -19.64891 -18.97445 -18.53353 -16.47706 -15.84681 -15.51664 -15.17176 -14.75889 -14.27705 -13.94741 -13.88403 -13.68481 -12.95645 -12.63053 -12.51044 -12.13160 -11.95402 -11.58337 -11.41026 -11.04420 -10.93122 -10.84056 -10.60440 -10.51199 -10.41646 -10.37984 -10.22199 -9.90027 -9.54420 -9.32090 -9.16144 -9.07944 -8.67318 -8.11300 -7.26231 -6.09154 -4.11949 3.21624 3.32702 3.36907 3.85975 4.10283 4.31558 4.60101 4.72860 4.92370 4.95160 5.03903 5.12835 5.29041 5.34570 5.42636 5.53957 5.68176 5.83166 5.88682 5.96597 5.98118 6.05282 6.07347 6.15379 6.30484 6.33020 6.44187 6.53653 6.58187 6.64290 6.66291 6.78948 6.86191 6.97186 7.12826 7.23090 7.38775 7.52930 7.91417 8.11461 8.38976 8.42949 8.84339 9.44694 10.87290 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.007951 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.649018 B = 3520.616127 C = 4026.910928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.071 3.929 3 Si 0.883 3.117 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.486 4.486 8 H 0.061 0.939 9 C 0.056 3.944 10 C 0.090 3.910 11 N -0.625 5.625 12 C 0.044 3.956 13 C -0.129 4.129 14 C -0.244 4.244 15 H 0.124 0.876 16 C 0.079 3.921 17 O -0.353 6.353 18 C 0.119 3.881 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.111 4.111 22 C -0.204 4.204 23 C -0.201 4.201 24 H 0.260 0.740 25 H 0.030 0.970 26 H 0.087 0.913 27 H 0.355 0.645 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.733 -2.962 10.296 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.710 3.290 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.524 4.524 8 H 0.079 0.921 9 C 0.055 3.945 10 C -0.038 4.038 11 N -0.255 5.255 12 C -0.051 4.051 13 C -0.167 4.167 14 C -0.266 4.266 15 H 0.142 0.858 16 C 0.002 3.998 17 O -0.271 6.271 18 C 0.079 3.921 19 C -0.185 4.185 20 C -0.176 4.176 21 C -0.149 4.149 22 C -0.243 4.243 23 C -0.239 4.239 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.105 0.895 27 H 0.177 0.823 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.558 -3.282 10.679 11.461 hybrid contribution -0.263 1.650 -0.737 1.826 sum -2.822 -1.632 9.942 10.463 Atomic orbital electron populations 1.69878 1.05930 1.26535 1.48864 1.24943 0.94709 0.98955 0.94544 0.86664 0.80722 0.83810 0.77772 1.19492 1.21160 1.20619 1.20586 0.96209 0.89835 1.45763 0.92091 1.18908 0.94687 0.88243 0.92644 1.21657 0.97387 0.98002 0.86742 1.60116 1.19936 1.38065 1.07421 1.23610 0.86095 1.01795 0.93604 1.23579 0.94677 0.95442 1.02974 1.24663 1.10150 0.92240 0.99512 0.85758 1.22798 0.84887 1.00461 0.91607 1.88979 1.33203 1.28726 1.76236 1.21932 0.97344 0.82923 0.89924 1.23230 0.97593 0.99460 0.98181 1.22872 0.96458 1.01007 0.97312 1.22785 0.94077 1.01724 0.96265 1.22936 0.98258 1.07546 0.95541 1.22804 0.95770 1.03099 1.02196 0.92963 0.95155 0.89512 0.82266 0.89387 0.87541 0.89274 0.92759 0.91626 0.89058 0.91502 0.90479 0.87232 0.91118 0.92009 0.90623 0.91044 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.90 10.94 55.43 0.61 -22.29 16 2 C 0.07 1.84 4.79 -17.82 -0.09 1.76 16 3 Si 0.88 20.45 29.57 -169.99 -5.03 15.43 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.49 -12.74 8.29 -34.44 -0.29 -13.02 16 8 H 0.06 1.63 7.87 -52.48 -0.41 1.22 16 9 C 0.06 1.34 1.99 -155.67 -0.31 1.03 16 10 C 0.09 2.02 3.82 -3.83 -0.01 2.01 16 11 N -0.63 -13.01 5.83 -97.34 -0.57 -13.57 16 12 C 0.04 0.79 3.32 -129.00 -0.43 0.36 16 13 C -0.13 -2.12 8.95 -25.31 -0.23 -2.34 16 14 C -0.24 -4.33 6.71 -88.90 -0.60 -4.93 16 15 H 0.12 2.51 8.14 -51.93 -0.42 2.09 16 16 C 0.08 1.24 7.44 37.97 0.28 1.52 16 17 O -0.35 -6.22 11.43 -35.23 -0.40 -6.62 16 18 C 0.12 1.96 1.05 -90.54 -0.10 1.87 16 19 C -0.15 -2.00 7.00 -26.32 -0.18 -2.19 16 20 C -0.14 -1.80 8.09 -25.74 -0.21 -2.01 16 21 C -0.11 -1.72 7.22 -26.34 -0.19 -1.91 16 22 C -0.20 -4.63 9.94 -26.70 -0.27 -4.90 16 23 C -0.20 -4.40 9.95 -26.69 -0.27 -4.67 16 24 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 25 H 0.03 0.66 7.47 -51.93 -0.39 0.27 16 26 H 0.09 2.13 4.96 -51.93 -0.26 1.87 16 27 H 0.36 8.23 7.70 -39.29 -0.30 7.93 16 28 H 0.09 1.24 7.81 -51.93 -0.41 0.83 16 29 H 0.11 1.84 6.49 -51.93 -0.34 1.50 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.77 7.70 -51.93 -0.40 1.37 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -26.12 323.68 -10.10 -36.22 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -6.71 Total: 13.37 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.87 Total: -27.42 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.04 Total: -35.86 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.40 Total: -6.62 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.12 -10.10 -36.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933386399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.381 kcal (2) G-P(sol) polarization free energy of solvation -26.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds