Wall clock time and date at job start Mon Mar 30 2020 00:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54228 * 113.00926 * 2 1 4 4 N 1.48500 * 104.77765 * 260.39896 * 3 2 1 5 5 C 1.46902 * 111.00186 * 200.58870 * 4 3 2 6 6 C 1.52998 * 109.47144 * 185.25812 * 5 4 3 7 7 H 1.09003 * 109.46867 * 60.00663 * 6 5 4 8 8 O 1.42895 * 109.47478 * 300.00888 * 6 5 4 9 9 C 1.50696 * 109.47074 * 180.02562 * 6 5 4 10 10 H 1.07993 * 120.00465 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99947 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99802 * 0.02562 * 11 9 6 13 13 Si 1.86805 * 120.00172 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.46911 * 60.00164 * 13 11 9 15 15 H 1.48493 * 109.46978 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.46961 * 300.00399 * 13 11 9 17 17 C 1.48483 * 104.19485 * 320.13575 * 4 3 2 18 18 C 1.54238 * 104.78051 * 39.84613 * 17 4 3 19 19 H 1.08996 * 113.00910 * 99.65116 * 18 17 4 20 20 C 1.56101 * 107.91211 * 226.18231 * 18 17 4 21 21 H 1.09000 * 116.23845 * 274.71080 * 20 18 17 22 22 C 1.53353 * 104.15437 * 44.00658 * 20 18 17 23 23 C 1.31785 * 108.42160 * 70.25587 * 22 20 18 24 24 C 1.53342 * 108.41885 * 359.97438 * 23 22 20 25 25 H 1.09000 * 116.28517 * 160.48867 * 24 23 22 26 26 C 1.57216 * 99.84125 * 33.30337 * 24 23 22 27 27 H 1.08992 * 109.47789 * 178.86636 * 1 2 3 28 28 H 1.09009 * 109.46965 * 298.86943 * 1 2 3 29 29 H 1.09005 * 109.47113 * 58.86068 * 1 2 3 30 30 H 1.09002 * 110.38013 * 19.23066 * 3 2 1 31 31 H 1.09003 * 110.37989 * 141.58126 * 3 2 1 32 32 H 1.08995 * 109.47578 * 305.26565 * 5 4 3 33 33 H 1.09003 * 109.46698 * 65.26371 * 5 4 3 34 34 H 0.96701 * 114.00001 * 299.99896 * 8 6 5 35 35 H 0.97006 * 119.99915 * 180.02562 * 12 11 9 36 36 H 1.09002 * 110.38092 * 281.01812 * 17 4 3 37 37 H 1.08998 * 110.47279 * 158.71582 * 17 4 3 38 38 H 1.08007 * 125.78617 * 250.23671 * 22 20 18 39 39 H 1.08008 * 125.79121 * 179.97438 * 23 22 20 40 40 H 1.09005 * 112.52547 * 194.55286 * 26 24 23 41 41 H 1.09004 * 112.52228 * 66.69334 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1328 1.4196 0.0000 4 7 2.5013 1.6746 -1.4158 5 6 3.5046 2.7431 -1.5144 6 6 3.7616 3.0671 -2.9874 7 1 2.8332 3.3962 -3.4543 8 8 4.2424 1.8989 -3.6553 9 6 4.7912 4.1627 -3.0886 10 1 5.2198 4.5855 -2.1921 11 6 5.1861 4.6255 -4.3259 12 7 4.6638 4.1111 -5.4178 13 14 6.4619 5.9842 -4.4514 14 1 7.7269 5.5356 -3.8157 15 1 6.7104 6.2993 -5.8811 16 1 5.9623 7.1980 -3.7570 17 6 3.0547 0.3798 -1.8869 18 6 2.1431 -0.6913 -1.2540 19 1 1.3909 -1.0727 -1.9445 20 6 3.0570 -1.8021 -0.6476 21 1 3.3814 -2.5860 -1.3320 22 6 4.1674 -1.0243 0.0691 23 6 3.6482 -0.4398 1.1301 24 6 2.1560 -0.7873 1.1932 25 1 1.6714 -0.6605 2.1612 26 6 2.1924 -2.2388 0.5903 27 1 -0.3634 -1.0273 -0.0203 28 1 -0.3633 0.4962 0.9000 29 1 -0.3633 0.5315 -0.8796 30 1 1.3932 2.1461 0.3365 31 1 3.0181 1.4560 0.6350 32 1 3.1378 3.6342 -1.0050 33 1 4.4330 2.4140 -1.0475 34 1 5.0677 1.5497 -3.2918 35 1 4.9418 4.4364 -6.2883 36 1 4.0811 0.2572 -1.5409 37 1 3.0119 0.3200 -2.9744 38 1 5.1998 -0.9658 -0.2426 39 1 4.1831 0.1789 1.8355 40 1 1.2035 -2.5968 0.3037 41 1 2.7143 -2.9458 1.2353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933703252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:13 Heat of formation + Delta-G solvation = 0.315950 kcal Electronic energy + Delta-G solvation = -21137.641322 eV Core-core repulsion = 18211.407394 eV Total energy + Delta-G solvation = -2926.233927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.71756 -36.92453 -34.77099 -32.30474 -32.00416 -30.55168 -29.06318 -27.54051 -26.01314 -25.37559 -23.90682 -21.09599 -20.42936 -20.02458 -19.46494 -17.26748 -16.92568 -16.26880 -15.66896 -14.88947 -14.58074 -14.16276 -13.92585 -13.32694 -13.17152 -13.11015 -12.76714 -12.40795 -12.20230 -12.00146 -11.80067 -11.29753 -11.15761 -11.07999 -11.02372 -10.95228 -10.87609 -10.55137 -10.52420 -10.23093 -10.13886 -9.94056 -9.88177 -8.98476 -8.75911 -8.53631 -8.03831 -7.54782 -5.97236 -4.15488 2.32840 3.30071 3.35442 3.37110 4.36609 4.45638 4.47880 4.56641 4.97948 5.01441 5.15168 5.22650 5.29450 5.32968 5.38387 5.49624 5.59933 5.65735 5.72228 5.86479 5.88952 5.96362 6.03620 6.06604 6.14251 6.20052 6.27067 6.27747 6.34925 6.40628 6.45619 6.54513 6.65672 6.80204 6.97333 7.05560 7.55828 7.66707 7.79695 7.99965 8.25315 8.87871 9.42052 9.61671 11.06821 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.005072 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.396242 B = 5519.112384 C = 5593.442004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.061 4.061 3 C 0.034 3.966 4 N -0.502 5.502 5 C 0.023 3.977 6 C 0.238 3.762 7 H 0.061 0.939 8 O -0.559 6.559 9 C -0.573 4.573 10 H 0.052 0.948 11 C 0.081 3.919 12 N -0.858 5.858 13 Si 0.888 3.112 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.043 3.957 18 C -0.088 4.088 19 H 0.087 0.913 20 C -0.074 4.074 21 H 0.098 0.902 22 C -0.157 4.157 23 C -0.171 4.171 24 C -0.068 4.068 25 H 0.094 0.906 26 C -0.118 4.118 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.338 0.662 35 H 0.260 0.740 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 -11.807 12.397 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.061 4.061 3 C -0.094 4.094 4 N -0.225 5.225 5 C -0.105 4.105 6 C 0.180 3.820 7 H 0.079 0.921 8 O -0.361 6.361 9 C -0.612 4.612 10 H 0.071 0.929 11 C -0.126 4.126 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.084 4.084 18 C -0.107 4.107 19 H 0.105 0.895 20 C -0.092 4.092 21 H 0.116 0.884 22 C -0.174 4.174 23 C -0.189 4.189 24 C -0.087 4.087 25 H 0.113 0.887 26 C -0.155 4.155 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.181 0.819 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.887 -11.481 11.491 17.277 hybrid contribution 2.139 0.827 0.793 2.427 sum -3.748 -10.654 12.284 16.687 Atomic orbital electron populations 1.21554 0.93355 1.01166 1.01980 1.22402 0.95001 0.94632 0.94092 1.23339 0.98881 0.95249 0.91918 1.65423 1.37950 1.05060 1.14092 1.23164 0.91573 0.93389 1.02381 1.19317 0.95066 0.83198 0.84398 0.92080 1.86595 1.41258 1.45849 1.62381 1.21603 1.25644 1.21470 0.92444 0.92933 1.25014 0.95897 0.95796 0.95843 1.70076 1.41353 1.40473 0.97465 0.86752 0.82077 0.82599 0.77010 1.20257 1.21184 1.20181 1.23381 0.95331 0.87697 1.01981 1.23244 0.96823 0.94899 0.95728 0.89502 1.22971 0.93544 0.96577 0.96139 0.88416 1.23889 0.98398 0.99380 0.95768 1.23812 0.95602 1.00491 0.99007 1.22950 0.93257 0.94987 0.97487 0.88738 1.24007 0.99531 0.95900 0.96062 0.92931 0.92936 0.91715 0.91525 0.93413 0.91780 0.96164 0.81896 0.92982 0.93558 0.88441 0.85962 0.86202 0.90879 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.93 37.16 0.33 -1.11 16 2 C -0.06 -0.80 0.82 -150.75 -0.12 -0.92 16 3 C 0.03 0.54 5.31 -2.30 -0.01 0.52 16 4 N -0.50 -9.51 5.37 -230.28 -1.24 -10.75 16 5 C 0.02 0.50 4.60 -3.82 -0.02 0.48 16 6 C 0.24 6.14 3.08 -27.89 -0.09 6.05 16 7 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 8 O -0.56 -14.21 9.69 -35.23 -0.34 -14.55 16 9 C -0.57 -15.95 8.76 -34.44 -0.30 -16.25 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 11 C 0.08 2.28 5.40 -17.82 -0.10 2.19 16 12 N -0.86 -25.65 12.84 55.43 0.71 -24.94 16 13 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C 0.04 0.76 4.21 -2.30 -0.01 0.75 16 18 C -0.09 -1.24 3.63 -86.84 -0.32 -1.55 16 19 H 0.09 1.21 8.00 -51.93 -0.42 0.80 16 20 C -0.07 -0.89 4.98 -86.50 -0.43 -1.32 16 21 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 22 C -0.16 -2.00 7.54 -34.86 -0.26 -2.26 16 23 C -0.17 -2.13 7.54 -34.87 -0.26 -2.39 16 24 C -0.07 -0.78 4.54 -86.52 -0.39 -1.17 16 25 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 26 C -0.12 -1.24 6.64 -22.17 -0.15 -1.38 16 27 H 0.05 0.54 7.55 -51.93 -0.39 0.15 16 28 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 31 H 0.05 0.76 5.41 -51.93 -0.28 0.47 16 32 H 0.06 1.38 8.13 -51.93 -0.42 0.95 16 33 H 0.02 0.43 7.88 -51.93 -0.41 0.02 16 34 H 0.34 7.82 8.91 45.56 0.41 8.22 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.05 0.81 5.22 -51.93 -0.27 0.54 16 37 H 0.10 1.96 6.53 -51.93 -0.34 1.62 16 38 H 0.12 1.53 8.01 -52.48 -0.42 1.11 16 39 H 0.12 1.42 8.01 -52.48 -0.42 1.00 16 40 H 0.07 0.71 7.54 -51.93 -0.39 0.32 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -29.87 308.75 -9.21 -39.08 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.84 Total: 8.53 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.13 Total: -18.38 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.52 Total: -35.68 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.34 Total: -14.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.87 -9.21 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933703252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.396 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds