Wall clock time and date at job start Mon Mar 30 2020 00:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.54228 * 113.00926 * 2 1 4 4 N 1.48500 * 104.77765 * 260.39896 * 3 2 1 5 5 C 1.46902 * 111.00186 * 200.58870 * 4 3 2 6 6 C 1.52998 * 109.47144 * 185.25812 * 5 4 3 7 7 H 1.09003 * 109.46867 * 60.00663 * 6 5 4 8 8 O 1.42895 * 109.47478 * 300.00888 * 6 5 4 9 9 C 1.50696 * 109.47074 * 180.02562 * 6 5 4 10 10 H 1.07993 * 120.00465 * 0.02562 * 9 6 5 11 11 C 1.37878 * 119.99947 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99802 * 0.02562 * 11 9 6 13 13 Si 1.86805 * 120.00172 * 179.97438 * 11 9 6 14 14 H 1.48504 * 109.46911 * 60.00164 * 13 11 9 15 15 H 1.48493 * 109.46978 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.46961 * 300.00399 * 13 11 9 17 17 C 1.48483 * 104.19485 * 320.13575 * 4 3 2 18 18 C 1.54238 * 104.78051 * 39.84613 * 17 4 3 19 19 H 1.08996 * 113.00910 * 99.65116 * 18 17 4 20 20 C 1.56101 * 107.91211 * 226.18231 * 18 17 4 21 21 H 1.09000 * 116.23845 * 274.71080 * 20 18 17 22 22 C 1.53353 * 104.15437 * 44.00658 * 20 18 17 23 23 C 1.31785 * 108.42160 * 70.25587 * 22 20 18 24 24 C 1.53342 * 108.41885 * 359.97438 * 23 22 20 25 25 H 1.09000 * 116.28517 * 160.48867 * 24 23 22 26 26 C 1.57216 * 99.84125 * 33.30337 * 24 23 22 27 27 H 1.08992 * 109.47789 * 178.86636 * 1 2 3 28 28 H 1.09009 * 109.46965 * 298.86943 * 1 2 3 29 29 H 1.09005 * 109.47113 * 58.86068 * 1 2 3 30 30 H 1.09002 * 110.38013 * 19.23066 * 3 2 1 31 31 H 1.09003 * 110.37989 * 141.58126 * 3 2 1 32 32 H 1.08995 * 109.47578 * 305.26565 * 5 4 3 33 33 H 1.09003 * 109.46698 * 65.26371 * 5 4 3 34 34 H 0.96701 * 114.00001 * 299.99896 * 8 6 5 35 35 H 0.97006 * 119.99915 * 180.02562 * 12 11 9 36 36 H 1.09002 * 110.38092 * 281.01812 * 17 4 3 37 37 H 1.08998 * 110.47279 * 158.71582 * 17 4 3 38 38 H 1.08007 * 125.78617 * 250.23671 * 22 20 18 39 39 H 1.08008 * 125.79121 * 179.97438 * 23 22 20 40 40 H 1.09005 * 112.52547 * 194.55286 * 26 24 23 41 41 H 1.09004 * 112.52228 * 66.69334 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1328 1.4196 0.0000 4 7 2.5013 1.6746 -1.4158 5 6 3.5046 2.7431 -1.5144 6 6 3.7616 3.0671 -2.9874 7 1 2.8332 3.3962 -3.4543 8 8 4.2424 1.8989 -3.6553 9 6 4.7912 4.1627 -3.0886 10 1 5.2198 4.5855 -2.1921 11 6 5.1861 4.6255 -4.3259 12 7 4.6638 4.1111 -5.4178 13 14 6.4619 5.9842 -4.4514 14 1 7.7269 5.5356 -3.8157 15 1 6.7104 6.2993 -5.8811 16 1 5.9623 7.1980 -3.7570 17 6 3.0547 0.3798 -1.8869 18 6 2.1431 -0.6913 -1.2540 19 1 1.3909 -1.0727 -1.9445 20 6 3.0570 -1.8021 -0.6476 21 1 3.3814 -2.5860 -1.3320 22 6 4.1674 -1.0243 0.0691 23 6 3.6482 -0.4398 1.1301 24 6 2.1560 -0.7873 1.1932 25 1 1.6714 -0.6605 2.1612 26 6 2.1924 -2.2388 0.5903 27 1 -0.3634 -1.0273 -0.0203 28 1 -0.3633 0.4962 0.9000 29 1 -0.3633 0.5315 -0.8796 30 1 1.3932 2.1461 0.3365 31 1 3.0181 1.4560 0.6350 32 1 3.1378 3.6342 -1.0050 33 1 4.4330 2.4140 -1.0475 34 1 5.0677 1.5497 -3.2918 35 1 4.9418 4.4364 -6.2883 36 1 4.0811 0.2572 -1.5409 37 1 3.0119 0.3200 -2.9744 38 1 5.1998 -0.9658 -0.2426 39 1 4.1831 0.1789 1.8355 40 1 1.2035 -2.5968 0.3037 41 1 2.7143 -2.9458 1.2353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933703252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:12 Heat of formation + Delta-G solvation = -19.999995 kcal Electronic energy + Delta-G solvation = -21138.522287 eV Core-core repulsion = 18211.407394 eV Total energy + Delta-G solvation = -2927.114893 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.78852 -38.62253 -36.42994 -34.27787 -33.37777 -31.80289 -30.52465 -28.84967 -27.39977 -26.58233 -25.54580 -22.79063 -21.74583 -21.27711 -20.50262 -19.01050 -18.33602 -17.29652 -16.96596 -16.68223 -16.33628 -16.03128 -15.58375 -14.77081 -14.48500 -14.42165 -14.12351 -13.63398 -13.46776 -13.15491 -13.10722 -12.93457 -12.87767 -12.77143 -12.43318 -12.28824 -12.12332 -12.01052 -11.84018 -11.67003 -11.32822 -11.22166 -11.02687 -10.99209 -10.71739 -10.08675 -9.74950 -9.03991 -8.14524 -6.41304 1.35053 1.38606 1.40695 1.48961 2.37047 3.10810 3.21100 3.44860 3.54880 3.75540 4.03264 4.13986 4.15408 4.19673 4.35221 4.36726 4.43471 4.48158 4.51803 4.61859 4.68892 4.70964 4.79910 4.92189 4.97917 5.02925 5.07996 5.12053 5.20984 5.22785 5.28852 5.34581 5.42145 5.47671 5.60224 5.63197 5.73354 6.00034 6.07181 6.16234 6.28024 6.71432 7.30772 7.51201 8.89745 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036863 B = 0.005072 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.396242 B = 5519.112384 C = 5593.442004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.056 4.056 3 C 0.033 3.967 4 N -0.520 5.520 5 C 0.043 3.957 6 C 0.241 3.759 7 H 0.017 0.983 8 O -0.567 6.567 9 C -0.590 4.590 10 H 0.057 0.943 11 C 0.027 3.973 12 N -0.899 5.899 13 Si 0.961 3.039 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.048 3.952 18 C -0.088 4.088 19 H 0.087 0.913 20 C -0.073 4.073 21 H 0.106 0.894 22 C -0.173 4.173 23 C -0.174 4.174 24 C -0.061 4.061 25 H 0.116 0.884 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.347 0.653 35 H 0.262 0.738 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -12.639 14.410 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.056 4.056 3 C -0.094 4.094 4 N -0.244 5.244 5 C -0.086 4.086 6 C 0.183 3.817 7 H 0.035 0.965 8 O -0.370 6.370 9 C -0.628 4.628 10 H 0.075 0.925 11 C -0.175 4.175 12 N -0.536 5.536 13 Si 0.785 3.215 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.079 4.079 18 C -0.107 4.107 19 H 0.105 0.895 20 C -0.091 4.091 21 H 0.124 0.876 22 C -0.191 4.191 23 C -0.192 4.192 24 C -0.080 4.080 25 H 0.134 0.866 26 C -0.143 4.143 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.191 0.809 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.865 -12.322 13.525 19.214 hybrid contribution 2.112 1.081 0.143 2.377 sum -3.753 -11.242 13.668 18.091 Atomic orbital electron populations 1.21540 0.92007 1.02417 1.01795 1.22416 0.95971 0.92767 0.94493 1.23432 0.99126 0.97246 0.89610 1.65332 1.37058 1.05172 1.16820 1.22737 0.92430 0.94407 0.98986 1.19080 0.92835 0.83151 0.86605 0.96533 1.86554 1.41867 1.45637 1.62935 1.21982 1.25943 1.22060 0.92793 0.92518 1.25900 0.98027 0.98250 0.95357 1.70223 1.43039 1.42257 0.98031 0.85596 0.79374 0.79373 0.77121 1.19187 1.20842 1.19351 1.23252 0.96303 0.88303 1.00076 1.23224 0.96659 0.94682 0.96098 0.89505 1.23008 0.93183 0.96024 0.96889 0.87574 1.24019 0.98597 1.00170 0.96275 1.24036 0.96427 0.99996 0.98764 1.23004 0.92216 0.95160 0.97583 0.86627 1.23970 0.99966 0.95443 0.94876 0.90887 0.91486 0.93662 0.91448 0.93213 0.92090 0.96014 0.80879 0.92952 0.93677 0.91923 0.86442 0.85823 0.89500 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.93 71.98 0.64 -1.87 16 2 C -0.06 -1.35 0.82 -49.75 -0.04 -1.39 16 3 C 0.03 1.01 5.31 86.41 0.46 1.47 16 4 N -0.52 -20.04 5.37 -882.48 -4.74 -24.78 16 5 C 0.04 1.89 4.60 86.30 0.40 2.29 16 6 C 0.24 12.93 3.08 29.85 0.09 13.03 16 7 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 8 O -0.57 -30.03 9.69 -148.98 -1.44 -31.48 16 9 C -0.59 -33.40 8.76 25.60 0.22 -33.17 16 10 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 11 C 0.03 1.56 5.40 84.65 0.46 2.01 16 12 N -0.90 -55.01 12.84 21.45 0.28 -54.73 16 13 Si 0.96 44.08 29.54 68.60 2.03 46.10 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 C 0.05 1.71 4.21 86.42 0.36 2.07 16 18 C -0.09 -2.38 3.63 -8.34 -0.03 -2.41 16 19 H 0.09 2.35 8.00 -2.39 -0.02 2.33 16 20 C -0.07 -1.61 4.98 -8.13 -0.04 -1.65 16 21 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 22 C -0.17 -4.16 7.54 25.80 0.19 -3.97 16 23 C -0.17 -3.95 7.54 25.79 0.19 -3.75 16 24 C -0.06 -1.20 4.54 -8.14 -0.04 -1.24 16 25 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 26 C -0.11 -1.83 6.64 33.55 0.22 -1.61 16 27 H 0.07 1.24 7.55 -2.39 -0.02 1.22 16 28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 2.03 7.92 -2.39 -0.02 2.01 16 31 H 0.05 1.51 5.41 -2.39 -0.01 1.49 16 32 H 0.06 2.66 8.13 -2.39 -0.02 2.65 16 33 H 0.02 0.94 7.88 -2.39 -0.02 0.92 16 34 H 0.35 16.65 8.91 -74.06 -0.66 15.99 16 35 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 36 H 0.05 1.60 5.22 -2.39 -0.01 1.59 16 37 H 0.06 2.64 6.53 -2.39 -0.02 2.62 16 38 H 0.12 2.88 8.01 -2.91 -0.02 2.86 16 39 H 0.12 2.67 8.01 -2.91 -0.02 2.65 16 40 H 0.09 1.31 7.54 -2.38 -0.02 1.30 16 41 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -65.31 308.75 -0.43 -65.74 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.35 Total: 29.33 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.10 Total: -30.18 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -4.46 Total: -79.51 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.44 Total: -31.48 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -65.31 -0.43 -65.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933703252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.742 kcal (2) G-P(sol) polarization free energy of solvation -65.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds