Wall clock time and date at job start Mon Mar 30 2020 00:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 119.99783 * 2 1 4 4 C 1.38238 * 119.99547 * 180.29260 * 3 2 1 5 5 C 1.38234 * 119.99999 * 359.70936 * 4 3 2 6 6 C 1.38227 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00026 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99921 * 179.75066 * 2 1 3 9 9 C 1.50698 * 120.00203 * 359.97438 * 8 2 1 10 10 N 1.46903 * 109.47417 * 269.73381 * 9 8 2 11 11 C 1.46900 * 111.00085 * 66.04172 * 10 9 8 12 12 C 1.46896 * 111.00219 * 189.99963 * 10 9 8 13 13 C 1.53002 * 109.47246 * 169.99473 * 12 10 9 14 14 H 1.09000 * 109.46986 * 60.00111 * 13 12 10 15 15 O 1.42898 * 109.47113 * 300.00070 * 13 12 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 13 12 10 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 H 1.08999 * 109.47055 * 270.25355 * 1 2 3 25 25 H 1.08997 * 109.47530 * 30.25348 * 1 2 3 26 26 H 1.09007 * 109.47226 * 150.25078 * 1 2 3 27 27 H 1.07994 * 120.00535 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.99621 * 179.73065 * 4 3 2 29 29 H 1.08000 * 119.99646 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.46785 * 270.02286 * 7 6 5 31 31 H 1.09000 * 109.46816 * 30.01727 * 7 6 5 32 32 H 1.09000 * 109.47457 * 150.02140 * 7 6 5 33 33 H 1.08996 * 109.47508 * 149.72648 * 9 8 2 34 34 H 1.09004 * 109.47113 * 29.73049 * 9 8 2 35 35 H 1.09000 * 109.46850 * 183.95502 * 11 10 9 36 36 H 1.09000 * 109.47134 * 303.95834 * 11 10 9 37 37 H 1.08996 * 109.46988 * 63.95862 * 11 10 9 38 38 H 1.09004 * 109.47535 * 49.99620 * 12 10 9 39 39 H 1.09004 * 109.47041 * 289.99659 * 12 10 9 40 40 H 0.96701 * 113.99881 * 299.99463 * 15 13 12 41 41 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0061 5 6 4.2716 -0.0001 -0.0062 6 6 3.5805 -1.1971 -0.0006 7 6 4.3339 -2.5023 -0.0012 8 6 2.1981 -1.1971 0.0052 9 6 1.4447 -2.5022 0.0115 10 7 1.2059 -2.9232 1.3985 11 6 0.2983 -1.9923 2.0824 12 6 0.6880 -4.2969 1.4500 13 6 0.6874 -4.7878 2.8991 14 1 0.0539 -4.1377 3.5027 15 8 2.0213 -4.7621 3.4112 16 6 0.1555 -6.1968 2.9519 17 1 -0.1511 -6.6927 2.0428 18 6 0.0602 -6.8527 4.1610 19 7 0.4331 -6.2487 5.2680 20 14 -0.5985 -8.5995 4.2264 21 1 -0.6003 -9.0755 5.6331 22 1 -1.9844 -8.6263 3.6936 23 1 0.2650 -9.4853 3.4047 24 1 -0.3633 0.0045 1.0276 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5100 27 1 1.6582 2.1324 0.0004 28 1 4.1205 2.1325 -0.0105 29 1 5.3516 0.0000 -0.0113 30 1 4.5114 -2.8188 -1.0290 31 1 5.2885 -2.3710 0.5084 32 1 3.7470 -3.2610 0.5164 33 1 2.0314 -3.2630 -0.5033 34 1 0.4899 -2.3730 -0.4984 35 1 0.1941 -2.2877 3.1264 36 1 0.7057 -0.9827 2.0293 37 1 -0.6783 -2.0160 1.5989 38 1 1.3214 -4.9470 0.8464 39 1 -0.3295 -4.3164 1.0593 40 1 2.6414 -5.3195 2.9214 41 1 0.7755 -5.3417 5.2340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933764277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:07 Heat of formation + Delta-G solvation = -32.452419 kcal Electronic energy + Delta-G solvation = -20367.175270 eV Core-core repulsion = 17439.520400 eV Total energy + Delta-G solvation = -2927.654871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95978 -37.31682 -35.19158 -33.57281 -32.15451 -32.00766 -28.58105 -28.09957 -26.67860 -26.08755 -24.79689 -22.69758 -20.62346 -20.56505 -19.94382 -17.28845 -16.20951 -16.07506 -15.50386 -15.05915 -14.43989 -14.30972 -13.77472 -13.73137 -13.42773 -13.20195 -13.11210 -12.86906 -12.62709 -12.38055 -12.21302 -12.05430 -11.69201 -11.66242 -11.30093 -10.91660 -10.89968 -10.79563 -10.69034 -10.54127 -10.10400 -9.99239 -9.18026 -8.56432 -8.45299 -8.44438 -7.99300 -7.66409 -6.32878 -4.16347 1.43064 1.45939 3.42570 3.43822 3.63199 3.75527 4.47132 4.62344 4.84036 4.84915 4.99852 5.04108 5.21489 5.37766 5.38854 5.51915 5.52690 5.69282 5.70675 5.74343 5.78329 5.79345 5.86672 5.93126 6.03941 6.07437 6.12450 6.24339 6.37339 6.39684 6.46063 6.54861 6.62274 6.68012 6.83187 7.11522 7.40576 7.54725 7.66566 8.05605 8.37737 8.88340 9.26392 9.70291 11.07169 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033824 B = 0.004548 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.620586 B = 6155.400450 C = 6481.620297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.058 4.058 7 C -0.120 4.120 8 C -0.069 4.069 9 C 0.085 3.915 10 N -0.521 5.521 11 C 0.021 3.979 12 C 0.037 3.963 13 C 0.222 3.778 14 H 0.047 0.953 15 O -0.570 6.570 16 C -0.652 4.652 17 H 0.047 0.953 18 C 0.035 3.965 19 N -0.892 5.892 20 Si 1.066 2.934 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.288 1.288 24 H 0.078 0.922 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.018 0.982 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.350 0.650 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.855 12.319 -12.377 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.078 4.078 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.176 4.176 8 C -0.070 4.070 9 C -0.042 4.042 10 N -0.245 5.245 11 C -0.127 4.127 12 C -0.090 4.090 13 C 0.164 3.836 14 H 0.065 0.935 15 O -0.373 6.373 16 C -0.691 4.691 17 H 0.065 0.935 18 C -0.174 4.174 19 N -0.527 5.527 20 Si 0.894 3.106 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.214 1.214 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.194 0.806 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.671 11.496 -10.658 16.101 hybrid contribution -0.267 0.961 -1.993 2.228 sum 3.404 12.456 -12.651 18.078 Atomic orbital electron populations 1.21150 0.91684 1.02405 1.02871 1.19739 0.95773 0.92707 0.99619 1.20903 0.94244 0.97121 1.02632 1.21027 0.94251 0.97738 1.00715 1.20982 0.99506 0.92080 1.02261 1.19753 0.93058 0.95407 0.97679 1.20872 1.00014 0.95049 1.01693 1.19527 0.93119 0.94200 1.00147 1.21127 0.97901 0.93816 0.91341 1.62055 1.47237 1.02800 1.12382 1.22660 0.93275 0.96724 1.00050 1.22967 0.96865 0.87083 1.02074 1.19471 0.81708 0.95170 0.87246 0.93521 1.86476 1.20984 1.70376 1.59496 1.22448 1.49926 1.00629 0.96075 0.93461 1.25751 0.94500 1.05012 0.92088 1.70627 1.37119 1.15869 1.29037 0.83617 0.76097 0.74845 0.76030 1.20740 1.21552 1.21433 0.90346 0.92039 0.91352 0.86540 0.86507 0.86414 0.91801 0.91819 0.89705 0.90314 0.94424 0.91076 0.91499 0.96359 0.91809 0.95513 0.80551 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 8.15 36.01 0.29 -1.15 16 2 C -0.08 -1.03 4.88 -104.63 -0.51 -1.54 16 3 C -0.13 -1.58 9.70 -39.58 -0.38 -1.96 16 4 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 5 C -0.13 -1.62 9.70 -39.59 -0.38 -2.01 16 6 C -0.06 -0.81 5.88 -104.62 -0.62 -1.43 16 7 C -0.12 -1.53 9.20 36.01 0.33 -1.20 16 8 C -0.07 -1.01 4.88 -104.63 -0.51 -1.52 16 9 C 0.09 1.30 4.10 -4.97 -0.02 1.28 16 10 N -0.52 -9.45 4.58 -244.37 -1.12 -10.57 16 11 C 0.02 0.36 7.53 60.06 0.45 0.82 16 12 C 0.04 0.77 4.56 -3.83 -0.02 0.76 16 13 C 0.22 5.58 2.30 -27.88 -0.06 5.51 16 14 H 0.05 1.28 6.42 -51.93 -0.33 0.95 16 15 O -0.57 -14.57 11.88 -35.23 -0.42 -14.99 16 16 C -0.65 -18.12 8.76 -34.44 -0.30 -18.43 16 17 H 0.05 1.29 7.74 -52.49 -0.41 0.89 16 18 C 0.04 1.01 5.40 -17.82 -0.10 0.92 16 19 N -0.89 -27.36 13.53 55.43 0.75 -26.61 16 20 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.08 0.92 5.80 -51.93 -0.30 0.62 16 25 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 26 H 0.07 0.81 5.94 -51.92 -0.31 0.50 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.08 1.25 6.66 -51.93 -0.35 0.90 16 33 H 0.08 1.16 6.49 -51.93 -0.34 0.82 16 34 H 0.04 0.55 5.92 -51.93 -0.31 0.25 16 35 H 0.07 1.40 6.47 -51.93 -0.34 1.06 16 36 H 0.07 1.08 4.78 -51.93 -0.25 0.83 16 37 H 0.02 0.29 7.56 -51.93 -0.39 -0.10 16 38 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 40 H 0.35 8.13 9.04 45.56 0.41 8.55 16 41 H 0.28 8.92 6.47 -40.82 -0.26 8.66 16 LS Contribution 320.12 15.07 4.82 4.82 Total: -1.00 -31.05 320.12 -8.60 -39.66 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.33 Total: 9.53 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.23 Total: -21.74 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.37 Total: -37.18 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.42 Total: -14.99 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.05 -8.60 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933764277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.204 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds