Wall clock time and date at job start Mon Mar 30 2020 00:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 119.99783 * 2 1 4 4 C 1.38238 * 119.99547 * 180.29260 * 3 2 1 5 5 C 1.38234 * 119.99999 * 359.70936 * 4 3 2 6 6 C 1.38227 * 120.00014 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00026 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99921 * 179.75066 * 2 1 3 9 9 C 1.50698 * 120.00203 * 359.97438 * 8 2 1 10 10 N 1.46903 * 109.47417 * 269.73381 * 9 8 2 11 11 C 1.46900 * 111.00085 * 66.04172 * 10 9 8 12 12 C 1.46896 * 111.00219 * 189.99963 * 10 9 8 13 13 C 1.53002 * 109.47246 * 169.99473 * 12 10 9 14 14 H 1.09000 * 109.46986 * 60.00111 * 13 12 10 15 15 O 1.42898 * 109.47113 * 300.00070 * 13 12 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 13 12 10 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 13 12 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 13 12 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 H 1.08999 * 109.47055 * 270.25355 * 1 2 3 25 25 H 1.08997 * 109.47530 * 30.25348 * 1 2 3 26 26 H 1.09007 * 109.47226 * 150.25078 * 1 2 3 27 27 H 1.07994 * 120.00535 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.99621 * 179.73065 * 4 3 2 29 29 H 1.08000 * 119.99646 * 179.97438 * 5 4 3 30 30 H 1.08996 * 109.46785 * 270.02286 * 7 6 5 31 31 H 1.09000 * 109.46816 * 30.01727 * 7 6 5 32 32 H 1.09000 * 109.47457 * 150.02140 * 7 6 5 33 33 H 1.08996 * 109.47508 * 149.72648 * 9 8 2 34 34 H 1.09004 * 109.47113 * 29.73049 * 9 8 2 35 35 H 1.09000 * 109.46850 * 183.95502 * 11 10 9 36 36 H 1.09000 * 109.47134 * 303.95834 * 11 10 9 37 37 H 1.08996 * 109.46988 * 63.95862 * 11 10 9 38 38 H 1.09004 * 109.47535 * 49.99620 * 12 10 9 39 39 H 1.09004 * 109.47041 * 289.99659 * 12 10 9 40 40 H 0.96701 * 113.99881 * 299.99463 * 15 13 12 41 41 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0061 5 6 4.2716 -0.0001 -0.0062 6 6 3.5805 -1.1971 -0.0006 7 6 4.3339 -2.5023 -0.0012 8 6 2.1981 -1.1971 0.0052 9 6 1.4447 -2.5022 0.0115 10 7 1.2059 -2.9232 1.3985 11 6 0.2983 -1.9923 2.0824 12 6 0.6880 -4.2969 1.4500 13 6 0.6874 -4.7878 2.8991 14 1 0.0539 -4.1377 3.5027 15 8 2.0213 -4.7621 3.4112 16 6 0.1555 -6.1968 2.9519 17 1 -0.1511 -6.6927 2.0428 18 6 0.0602 -6.8527 4.1610 19 7 0.4331 -6.2487 5.2680 20 14 -0.5985 -8.5995 4.2264 21 1 -0.6003 -9.0755 5.6331 22 1 -1.9844 -8.6263 3.6936 23 1 0.2650 -9.4853 3.4047 24 1 -0.3633 0.0045 1.0276 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5100 27 1 1.6582 2.1324 0.0004 28 1 4.1205 2.1325 -0.0105 29 1 5.3516 0.0000 -0.0113 30 1 4.5114 -2.8188 -1.0290 31 1 5.2885 -2.3710 0.5084 32 1 3.7470 -3.2610 0.5164 33 1 2.0314 -3.2630 -0.5033 34 1 0.4899 -2.3730 -0.4984 35 1 0.1941 -2.2877 3.1264 36 1 0.7057 -0.9827 2.0293 37 1 -0.6783 -2.0160 1.5989 38 1 1.3214 -4.9470 0.8464 39 1 -0.3295 -4.3164 1.0593 40 1 2.6414 -5.3195 2.9214 41 1 0.7755 -5.3417 5.2340 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933764277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:06 Heat of formation + Delta-G solvation = -53.087890 kcal Electronic energy + Delta-G solvation = -20368.070091 eV Core-core repulsion = 17439.520400 eV Total energy + Delta-G solvation = -2928.549692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00693 -38.92178 -36.92788 -34.53902 -34.21876 -33.26872 -30.20583 -29.38026 -27.79153 -27.19738 -26.53169 -24.37963 -22.20814 -21.56760 -21.16606 -19.38181 -17.38611 -17.21638 -16.95963 -16.63492 -15.88927 -15.71169 -15.46855 -15.26957 -14.86214 -14.47683 -14.19652 -14.13586 -13.79322 -13.75597 -13.57840 -13.50785 -13.05756 -12.78606 -12.62350 -12.45262 -12.38910 -12.17610 -12.01289 -11.92494 -11.79060 -11.64203 -11.13658 -10.61331 -10.06717 -9.57609 -9.40558 -9.11125 -8.60192 -6.45203 0.44844 0.49805 1.53701 1.61398 1.80839 2.56074 2.73827 3.17357 3.22965 3.80427 3.87236 4.03607 4.06193 4.12018 4.17662 4.24624 4.30096 4.44596 4.45325 4.54092 4.64503 4.64707 4.74430 4.79528 4.82364 4.85282 4.89214 4.94031 5.01051 5.06812 5.30283 5.40594 5.46566 5.61541 5.66287 5.80531 5.84223 6.04577 6.15445 6.18602 6.22886 6.57333 7.26874 7.53325 8.77228 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033824 B = 0.004548 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.620586 B = 6155.400450 C = 6481.620297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.076 4.076 7 C -0.116 4.116 8 C -0.093 4.093 9 C 0.092 3.908 10 N -0.530 5.530 11 C 0.029 3.971 12 C 0.055 3.945 13 C 0.222 3.778 14 H 0.017 0.983 15 O -0.581 6.581 16 C -0.661 4.661 17 H 0.051 0.949 18 C -0.016 4.016 19 N -0.921 5.921 20 Si 1.116 2.884 21 H -0.286 1.286 22 H -0.271 1.271 23 H -0.268 1.268 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.136 0.864 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.359 0.641 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.075 13.016 -13.993 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.136 4.136 5 C -0.157 4.157 6 C -0.077 4.077 7 C -0.172 4.172 8 C -0.093 4.093 9 C -0.035 4.035 10 N -0.253 5.253 11 C -0.119 4.119 12 C -0.073 4.073 13 C 0.165 3.835 14 H 0.034 0.966 15 O -0.386 6.386 16 C -0.699 4.699 17 H 0.069 0.931 18 C -0.218 4.218 19 N -0.557 5.557 20 Si 0.937 3.063 21 H -0.212 1.212 22 H -0.196 1.196 23 H -0.193 1.193 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.154 0.846 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.205 0.795 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.896 12.211 -12.307 17.770 hybrid contribution -0.282 0.859 -1.534 1.781 sum 3.614 13.071 -13.841 19.377 Atomic orbital electron populations 1.21136 0.90802 1.03213 1.02770 1.19984 0.96621 0.92809 0.99498 1.21240 0.94725 0.97600 1.01873 1.21415 0.94399 0.98629 0.99166 1.21267 1.00626 0.91876 1.01909 1.19984 0.93153 0.96355 0.98204 1.20826 0.99810 0.94155 1.02420 1.19546 0.93551 0.94073 1.02167 1.21089 0.98478 0.94658 0.89278 1.61954 1.47069 1.01613 1.14712 1.22580 0.94007 0.97127 0.98204 1.22577 0.97051 0.88895 0.98751 1.19331 0.80972 0.93790 0.89449 0.96554 1.86429 1.21271 1.70660 1.60217 1.22855 1.49153 1.01774 0.96147 0.93087 1.27289 0.94009 1.08717 0.91812 1.70776 1.39510 1.15276 1.30126 0.82977 0.76742 0.70426 0.76158 1.21197 1.19610 1.19303 0.90793 0.89893 0.91909 0.84232 0.83761 0.84572 0.90295 0.91036 0.92073 0.90101 0.93689 0.94199 0.90047 0.95186 0.91167 0.95737 0.79543 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.15 71.24 0.58 -2.04 16 2 C -0.09 -2.19 4.88 -19.87 -0.10 -2.29 16 3 C -0.14 -2.93 9.70 22.27 0.22 -2.71 16 4 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 5 C -0.14 -3.16 9.70 22.27 0.22 -2.95 16 6 C -0.08 -2.03 5.88 -19.87 -0.12 -2.15 16 7 C -0.12 -2.86 9.20 71.24 0.66 -2.20 16 8 C -0.09 -2.60 4.88 -19.87 -0.10 -2.70 16 9 C 0.09 2.74 4.10 85.56 0.35 3.09 16 10 N -0.53 -19.28 4.58 -927.04 -4.25 -23.53 16 11 C 0.03 1.01 7.53 127.69 0.96 1.97 16 12 C 0.06 2.29 4.56 86.30 0.39 2.69 16 13 C 0.22 11.47 2.30 29.85 0.07 11.53 16 14 H 0.02 0.96 6.42 -2.39 -0.02 0.94 16 15 O -0.58 -30.53 11.88 -148.98 -1.77 -32.30 16 16 C -0.66 -36.99 8.76 25.60 0.22 -36.76 16 17 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 18 C -0.02 -0.94 5.40 84.66 0.46 -0.48 16 19 N -0.92 -57.75 13.53 21.45 0.29 -57.46 16 20 Si 1.12 49.83 29.90 68.60 2.05 51.89 16 21 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H 0.07 1.63 5.80 -2.39 -0.01 1.62 16 25 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 26 H 0.06 1.39 5.94 -2.38 -0.01 1.38 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 32 H 0.06 1.79 6.66 -2.39 -0.02 1.78 16 33 H 0.08 2.34 6.49 -2.39 -0.02 2.33 16 34 H 0.05 1.28 5.92 -2.39 -0.01 1.26 16 35 H 0.04 1.63 6.47 -2.39 -0.02 1.62 16 36 H 0.08 2.60 4.78 -2.39 -0.01 2.59 16 37 H 0.03 0.97 7.56 -2.39 -0.02 0.95 16 38 H 0.07 2.80 7.93 -2.39 -0.02 2.78 16 39 H 0.02 1.02 8.12 -2.38 -0.02 1.00 16 40 H 0.36 17.02 9.04 -74.06 -0.67 16.35 16 41 H 0.27 17.35 6.47 -92.71 -0.60 16.75 16 Total: -1.00 -67.09 320.12 0.89 -66.21 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.53 Total: 32.39 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 4.04 Total: -37.19 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -3.95 Total: -80.99 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.77 Total: -32.30 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.05 Total: 51.89 kcal Total: -67.09 0.89 -66.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933764277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds