Wall clock time and date at job start Mon Mar 30 2020 00:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50708 * 110.34245 * 2 1 4 4 O 1.21286 * 119.99742 * 122.22695 * 3 2 1 5 5 N 1.34775 * 119.99978 * 302.22604 * 3 2 1 6 6 C 1.46929 * 120.63204 * 354.89077 * 5 3 2 7 7 C 1.53191 * 108.89201 * 233.51715 * 6 5 3 8 8 C 1.53075 * 109.29560 * 305.57684 * 7 6 5 9 9 C 1.50701 * 109.44088 * 181.24147 * 8 7 6 10 10 H 1.08001 * 119.99678 * 239.80178 * 9 8 7 11 11 C 1.37877 * 120.00228 * 59.79399 * 9 8 7 12 12 N 1.31513 * 119.99842 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99924 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47036 * 90.00192 * 13 11 9 15 15 H 1.48496 * 109.47197 * 210.00061 * 13 11 9 16 16 H 1.48499 * 109.47497 * 330.00437 * 13 11 9 17 17 C 1.53039 * 109.65580 * 61.15775 * 8 7 6 18 18 C 1.46924 * 120.63138 * 174.87111 * 5 3 2 19 19 C 1.51106 * 110.39047 * 237.71542 * 2 1 3 20 20 C 1.30720 * 110.99147 * 257.42049 * 19 2 1 21 21 C 1.51102 * 111.13610 * 0.15423 * 20 19 2 22 22 C 1.54631 * 110.39350 * 122.28720 * 2 1 3 23 23 H 1.09001 * 109.47313 * 66.01589 * 1 2 3 24 24 H 1.09002 * 109.46799 * 186.01471 * 1 2 3 25 25 H 1.08992 * 109.47262 * 306.01041 * 1 2 3 26 26 H 1.08996 * 109.58477 * 353.37887 * 6 5 3 27 27 H 1.09001 * 109.58427 * 113.65434 * 6 5 3 28 28 H 1.08996 * 109.49703 * 65.39311 * 7 6 5 29 29 H 1.09001 * 109.49312 * 185.48726 * 7 6 5 30 30 H 1.08997 * 109.34514 * 301.13273 * 8 7 6 31 31 H 0.97000 * 119.99752 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.49451 * 178.75170 * 17 8 7 33 33 H 1.08997 * 109.52571 * 58.66576 * 17 8 7 34 34 H 1.08997 * 109.58896 * 246.20095 * 18 5 3 35 35 H 1.09007 * 109.58383 * 6.48634 * 18 5 3 36 36 H 1.08005 * 124.44243 * 77.47495 * 19 2 1 37 37 H 1.08002 * 124.41470 * 180.02562 * 20 19 2 38 38 H 1.08998 * 110.38624 * 224.64781 * 21 20 19 39 39 H 1.09004 * 110.38367 * 102.27954 * 21 20 19 40 40 H 1.08994 * 111.04246 * 212.32435 * 22 2 1 41 41 H 1.09004 * 111.03623 * 336.26727 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0538 1.4131 0.0000 4 8 2.7898 1.7869 0.8886 5 7 1.7045 2.2613 -0.9874 6 6 0.9058 1.7935 -2.1285 7 6 1.6319 2.1617 -3.4262 8 6 1.9241 3.6643 -3.4335 9 6 2.6112 4.0354 -4.7224 10 1 3.5956 4.4791 -4.7012 11 6 1.9832 3.8083 -5.9287 12 7 0.7844 3.2683 -5.9545 13 14 2.8353 4.2676 -7.5263 14 1 3.6366 3.1144 -8.0092 15 1 1.8164 4.6241 -8.5460 16 1 3.7305 5.4294 -7.2937 17 6 2.8304 4.0182 -2.2523 18 6 2.1147 3.6714 -0.9430 19 6 2.0564 -0.7565 -1.1974 20 6 2.4687 -1.9485 -0.8540 21 6 2.2817 -2.1841 0.6268 22 6 2.0688 -0.7742 1.2253 23 1 -0.3634 0.4177 -0.9389 24 1 -0.3633 -1.0220 0.1077 25 1 -0.3633 0.6041 0.8312 26 1 0.7855 0.7118 -2.0713 27 1 -0.0736 2.2715 -2.1094 28 1 2.5700 1.6102 -3.4872 29 1 1.0033 1.9069 -4.2795 30 1 0.9870 4.2148 -3.3500 31 1 0.3427 3.1082 -6.8032 32 1 3.0548 5.0847 -2.2727 33 1 3.7578 3.4499 -2.3216 34 1 1.2348 4.3045 -0.8286 35 1 2.7901 3.8291 -0.1021 36 1 2.0882 -0.3632 -2.2028 37 1 2.8863 -2.6710 -1.5396 38 1 3.1717 -2.6471 1.0530 39 1 1.4059 -2.8083 0.8043 40 1 3.0109 -0.3503 1.5727 41 1 1.3321 -0.7973 2.0284 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935316935.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:37 Heat of formation + Delta-G solvation = -21.823132 kcal Electronic energy + Delta-G solvation = -20939.405310 eV Core-core repulsion = 18012.211359 eV Total energy + Delta-G solvation = -2927.193950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61375 -37.93890 -36.62598 -33.59151 -31.92145 -30.59642 -29.98764 -28.75455 -26.38609 -25.32853 -23.21615 -22.38618 -21.04769 -19.52670 -19.27756 -18.15816 -16.52352 -16.25892 -15.81131 -15.25917 -14.56159 -14.47025 -14.25254 -13.34400 -13.22592 -12.97049 -12.84224 -12.65898 -12.36570 -12.20023 -11.88191 -11.63995 -11.51701 -11.26769 -11.18392 -11.06738 -10.94866 -10.67061 -10.57846 -10.36301 -10.10986 -9.66632 -9.37957 -9.17446 -8.90202 -8.80967 -8.39002 -7.96112 -6.04573 -4.10480 2.22008 3.06749 3.27143 3.34325 3.37927 3.53146 4.39784 4.50728 4.61626 4.93616 5.05006 5.24853 5.26919 5.35450 5.51566 5.59631 5.68624 5.69686 5.79627 5.85688 5.90674 6.00839 6.08795 6.09927 6.15544 6.17784 6.28068 6.38295 6.46462 6.54409 6.66777 6.87935 6.91513 7.04364 7.15976 7.27346 7.65441 7.90690 7.97478 8.03030 8.39188 8.61078 8.92907 9.54639 11.00905 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028451 B = 0.005487 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.907846 B = 5101.384603 C = 5521.323835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.057 4.057 3 C 0.525 3.475 4 O -0.559 6.559 5 N -0.595 5.595 6 C 0.088 3.912 7 C -0.124 4.124 8 C 0.049 3.951 9 C -0.511 4.511 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.122 4.122 18 C 0.110 3.890 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.100 4.100 22 C -0.105 4.105 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.027 0.973 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 -9.077 9.881 13.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.060 4.060 3 C 0.312 3.688 4 O -0.438 6.438 5 N -0.327 5.327 6 C -0.034 4.034 7 C -0.162 4.162 8 C 0.030 3.970 9 C -0.549 4.549 10 H 0.073 0.927 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.161 4.161 18 C -0.012 4.012 19 C -0.174 4.174 20 C -0.179 4.179 21 C -0.137 4.137 22 C -0.143 4.143 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.531 -8.901 10.213 13.633 hybrid contribution 0.381 0.269 -1.201 1.288 sum -1.151 -8.632 9.012 12.532 Atomic orbital electron populations 1.22014 0.91931 1.02574 1.03450 1.20615 0.97073 0.92632 0.95717 1.20343 0.80269 0.86828 0.81339 1.90603 1.37413 1.77932 1.37879 1.48148 1.52732 1.10054 1.21738 1.22469 0.94432 0.99516 0.86938 1.22038 0.99472 0.99784 0.94953 1.18632 0.94714 0.91995 0.91638 1.21213 1.02782 1.40199 0.90727 0.92738 1.24949 0.94843 0.95130 0.99007 1.69834 1.13450 1.43997 1.25854 0.86621 0.79295 0.78847 0.83406 1.20753 1.21248 1.19965 1.21990 0.99385 1.00268 0.94425 1.21695 0.99161 0.80571 0.99763 1.23410 0.99701 0.95792 0.98471 1.23351 0.99958 0.97576 0.96965 1.21388 1.01605 0.97455 0.93256 1.22467 1.02545 0.93740 0.95554 0.90547 0.91664 0.92150 0.89744 0.92197 0.94323 0.87752 0.95511 0.92996 0.92235 0.92995 0.92314 0.90447 0.84346 0.85520 0.91108 0.90756 0.89390 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.12 37.15 0.30 -1.44 16 2 C -0.06 -0.82 0.56 -155.76 -0.09 -0.91 16 3 C 0.52 9.44 6.55 -10.98 -0.07 9.37 16 4 O -0.56 -11.58 14.90 5.55 0.08 -11.49 16 5 N -0.60 -10.86 2.97 -172.76 -0.51 -11.37 16 6 C 0.09 1.56 4.22 -3.71 -0.02 1.55 16 7 C -0.12 -2.70 5.08 -26.59 -0.14 -2.83 16 8 C 0.05 1.16 2.06 -91.71 -0.19 0.97 16 9 C -0.51 -13.58 8.56 -34.44 -0.29 -13.88 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 12 N -0.89 -24.23 11.30 55.43 0.63 -23.60 16 13 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 18 C 0.11 2.07 6.44 -3.71 -0.02 2.04 16 19 C -0.16 -2.17 8.06 -35.75 -0.29 -2.46 16 20 C -0.16 -1.92 10.78 -35.75 -0.39 -2.30 16 21 C -0.10 -1.07 6.81 -26.83 -0.18 -1.25 16 22 C -0.11 -1.35 6.01 -25.01 -0.15 -1.50 16 23 H 0.08 0.95 5.12 -51.93 -0.27 0.69 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 1.31 2.85 -51.93 -0.15 1.16 16 27 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 36 H 0.14 2.06 6.31 -52.48 -0.33 1.73 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 41 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 311.59 15.07 4.70 4.70 Total: -1.00 -28.81 311.59 -8.27 -37.08 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.39 Total: 2.72 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -1.76 Total: -13.79 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.11 Total: -34.98 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.81 -8.27 -37.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935316935.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.260 kcal (2) G-P(sol) polarization free energy of solvation -28.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds