Wall clock time and date at job start Mon Mar 30 2020 00:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 110.43740 * 2 1 4 4 O 1.21284 * 119.99506 * 238.00579 * 3 2 1 5 5 N 1.34773 * 120.00404 * 57.99643 * 3 2 1 6 6 C 1.46925 * 120.62545 * 4.79657 * 5 3 2 7 7 C 1.53629 * 108.54123 * 126.36540 * 6 5 3 8 8 C 1.53038 * 109.24233 * 54.85600 * 7 6 5 9 9 C 1.50698 * 109.46270 * 178.49127 * 8 7 6 10 10 H 1.08000 * 120.00227 * 120.06377 * 9 8 7 11 11 C 1.37881 * 119.99764 * 300.06530 * 9 8 7 12 12 N 1.31514 * 119.99818 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00055 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46937 * 60.00019 * 13 11 9 15 15 H 1.48499 * 109.47186 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46839 * 300.00130 * 13 11 9 17 17 C 1.53043 * 109.53582 * 298.51127 * 8 7 6 18 18 C 1.46916 * 120.63198 * 185.07199 * 5 3 2 19 19 C 1.51106 * 110.38317 * 122.34490 * 2 1 3 20 20 C 1.30532 * 111.10638 * 102.37204 * 19 2 1 21 21 C 1.51099 * 111.09907 * 0.02562 * 20 19 2 22 22 C 1.54633 * 104.73231 * 16.43194 * 21 20 19 23 23 H 1.08998 * 109.47185 * 304.03031 * 1 2 3 24 24 H 1.09000 * 109.46555 * 64.03154 * 1 2 3 25 25 H 1.09000 * 109.47556 * 184.02894 * 1 2 3 26 26 H 1.09004 * 109.58840 * 246.19397 * 6 5 3 27 27 H 1.08997 * 109.59026 * 6.62248 * 6 5 3 28 28 H 1.08993 * 109.63401 * 294.85910 * 7 6 5 29 29 H 1.09002 * 109.45889 * 174.73571 * 7 6 5 30 30 H 1.09002 * 109.46224 * 58.52844 * 8 7 6 31 31 H 0.97006 * 119.99818 * 180.02562 * 12 11 9 32 32 H 1.09005 * 109.49596 * 301.41040 * 17 8 7 33 33 H 1.09004 * 109.52236 * 181.33504 * 17 8 7 34 34 H 1.09003 * 109.59056 * 353.37302 * 18 5 3 35 35 H 1.09000 * 109.58786 * 113.80318 * 18 5 3 36 36 H 1.07999 * 124.44554 * 282.64391 * 19 2 1 37 37 H 1.07997 * 124.44899 * 179.97438 * 20 19 2 38 38 H 1.09002 * 110.38987 * 135.24829 * 21 20 19 39 39 H 1.09002 * 110.38504 * 257.62041 * 21 20 19 40 40 H 1.08997 * 111.03455 * 93.40053 * 22 21 20 41 41 H 1.08998 * 111.03984 * 217.34122 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0562 1.4121 0.0000 4 8 2.7895 1.7859 -0.8908 5 7 1.7120 2.2596 0.9897 6 6 0.9109 1.7932 2.1297 7 6 1.6497 2.1560 3.4269 8 6 1.9424 3.6581 3.4375 9 6 2.6343 4.0258 4.7248 10 1 3.6196 4.4674 4.7012 11 6 2.0094 3.7983 5.9326 12 7 0.8098 3.2601 5.9612 13 14 2.8673 4.2534 7.5284 14 1 3.1504 5.7111 7.5398 15 1 1.9910 3.9099 8.6769 16 1 4.1427 3.5005 7.6368 17 6 2.8459 4.0118 2.2540 18 6 2.1254 3.6687 0.9463 19 6 2.0563 -0.7578 1.1967 20 6 2.4646 -1.9498 0.8558 21 6 2.2792 -2.1854 -0.6252 22 6 2.0696 -0.7754 -1.2245 23 1 -0.3633 0.5751 0.8516 24 1 -0.3632 0.4500 -0.9239 25 1 -0.3634 -1.0251 0.0722 26 1 -0.0649 2.2788 2.1137 27 1 0.7845 0.7123 2.0696 28 1 2.5869 1.6023 3.4817 29 1 1.0259 1.9009 4.2836 30 1 1.0064 4.2110 3.3577 31 1 0.3700 3.1004 6.8110 32 1 3.7720 3.4407 2.3198 33 1 3.0735 5.0776 2.2752 34 1 2.8007 3.8257 0.1051 35 1 1.2467 4.3041 0.8357 36 1 2.0863 -0.3663 2.2028 37 1 2.8810 -2.6724 1.5419 38 1 3.1690 -2.6501 -1.0501 39 1 1.4026 -2.8081 -0.8038 40 1 3.0129 -0.3533 -1.5707 41 1 1.3340 -0.7974 -2.0285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935316936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:40 Heat of formation + Delta-G solvation = -21.414140 kcal Electronic energy + Delta-G solvation = -20940.024892 eV Core-core repulsion = 18012.848677 eV Total energy + Delta-G solvation = -2927.176215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61894 -37.94342 -36.62212 -33.59562 -31.92382 -30.59255 -29.96626 -28.75439 -26.38159 -25.32952 -23.21402 -22.39462 -21.04610 -19.52645 -19.27219 -18.16303 -16.51514 -16.25683 -15.81029 -15.26062 -14.56373 -14.46116 -14.24791 -13.32422 -13.24274 -12.97453 -12.84095 -12.65490 -12.35534 -12.21347 -11.88370 -11.64156 -11.51051 -11.25609 -11.17037 -11.06608 -10.93324 -10.68252 -10.59738 -10.36328 -10.10716 -9.67006 -9.38105 -9.17204 -8.90749 -8.81847 -8.38715 -7.95919 -6.04331 -4.10363 2.22817 3.06653 3.28889 3.33546 3.36823 3.53185 4.39827 4.51006 4.61557 4.93680 5.05356 5.25058 5.26345 5.35450 5.51753 5.63322 5.67481 5.69251 5.79482 5.86539 5.91035 6.00709 6.08500 6.09236 6.15235 6.17750 6.27828 6.37272 6.46341 6.54610 6.66832 6.88205 6.91645 7.04310 7.15871 7.27505 7.65301 7.90950 7.97439 8.03044 8.39297 8.61154 8.92755 9.54678 11.01075 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.028423 B = 0.005490 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.873641 B = 5099.090294 C = 5519.536543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C 0.525 3.475 4 O -0.559 6.559 5 N -0.596 5.596 6 C 0.088 3.912 7 C -0.124 4.124 8 C 0.049 3.951 9 C -0.512 4.512 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.890 3.110 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C -0.123 4.123 18 C 0.110 3.890 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.100 4.100 22 C -0.105 4.105 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.104 0.896 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.139 0.861 37 H 0.127 0.873 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.831 -9.043 -9.868 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C 0.312 3.688 4 O -0.438 6.438 5 N -0.327 5.327 6 C -0.034 4.034 7 C -0.162 4.162 8 C 0.031 3.969 9 C -0.550 4.550 10 H 0.072 0.928 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.204 1.204 17 C -0.161 4.161 18 C -0.012 4.012 19 C -0.173 4.173 20 C -0.179 4.179 21 C -0.137 4.137 22 C -0.143 4.143 23 H 0.095 0.905 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.600 -8.876 -10.196 13.613 hybrid contribution 0.393 0.277 1.194 1.287 sum -1.208 -8.599 -9.002 12.507 Atomic orbital electron populations 1.22035 0.91906 1.02894 1.03259 1.20615 0.97070 0.92637 0.95714 1.20337 0.80284 0.86813 0.81341 1.90602 1.37576 1.77890 1.37758 1.48151 1.52684 1.10178 1.21692 1.22552 0.94378 0.99512 0.86940 1.22108 0.99352 0.99781 0.94972 1.18623 0.94727 0.91993 0.91596 1.21175 1.02705 1.40408 0.90725 0.92789 1.24949 0.94858 0.95098 0.98989 1.69825 1.13493 1.43917 1.25904 0.86682 0.79475 0.78992 0.83002 1.20305 1.21300 1.20355 1.22000 0.99372 1.00265 0.94463 1.21694 0.99114 0.80585 0.99786 1.23357 0.99711 0.95768 0.98490 1.23300 1.00014 0.97569 0.96989 1.21389 1.01608 0.97461 0.93258 1.22477 1.02549 0.93731 0.95550 0.90537 0.92131 0.91592 0.92130 0.89738 0.94273 0.87799 0.95503 0.92933 0.92998 0.92247 0.90439 0.92300 0.84377 0.85513 0.91122 0.90758 0.89397 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.14 37.16 0.30 -1.45 16 2 C -0.06 -0.82 0.56 -155.75 -0.09 -0.91 16 3 C 0.52 9.44 6.55 -10.99 -0.07 9.37 16 4 O -0.56 -11.58 14.90 5.55 0.08 -11.50 16 5 N -0.60 -10.86 2.96 -172.51 -0.51 -11.37 16 6 C 0.09 1.56 4.13 -3.48 -0.01 1.54 16 7 C -0.12 -2.69 5.08 -26.38 -0.13 -2.82 16 8 C 0.05 1.16 2.06 -91.73 -0.19 0.98 16 9 C -0.51 -13.60 8.56 -34.44 -0.29 -13.90 16 10 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 12 N -0.89 -24.23 11.30 55.43 0.63 -23.60 16 13 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C -0.12 -2.55 5.30 -26.61 -0.14 -2.70 16 18 C 0.11 2.07 6.44 -3.72 -0.02 2.04 16 19 C -0.16 -2.17 8.04 -35.70 -0.29 -2.45 16 20 C -0.16 -1.92 10.78 -35.70 -0.38 -2.31 16 21 C -0.10 -1.07 6.81 -26.83 -0.18 -1.26 16 22 C -0.11 -1.36 6.01 -25.00 -0.15 -1.51 16 23 H 0.08 0.97 4.99 -51.93 -0.26 0.71 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.06 8.04 -51.93 -0.42 0.65 16 27 H 0.08 1.31 3.01 -51.93 -0.16 1.15 16 28 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.14 2.06 6.29 -52.49 -0.33 1.73 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 41 H 0.07 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 311.44 15.07 4.69 4.69 Total: -1.00 -28.78 311.44 -8.26 -37.04 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.38 Total: 2.78 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.75 Total: -13.81 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.12 Total: -34.98 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.78 -8.26 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935316936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.628 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds