Wall clock time and date at job start Mon Mar 30 2020 00:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 110.91524 * 2 1 4 4 O 1.21283 * 119.99821 * 244.57231 * 3 2 1 5 5 N 1.34769 * 119.99971 * 64.56686 * 3 2 1 6 6 C 1.46924 * 120.63328 * 175.72488 * 5 3 2 7 7 C 1.53186 * 108.77955 * 233.59096 * 6 5 3 8 8 C 1.53048 * 109.31096 * 305.36017 * 7 6 5 9 9 C 1.50704 * 109.46030 * 181.38472 * 8 7 6 10 10 H 1.07998 * 119.99484 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00100 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00008 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99982 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47405 * 89.99583 * 13 11 9 15 15 H 1.48501 * 109.47355 * 209.99783 * 13 11 9 16 16 H 1.48509 * 109.47000 * 329.99582 * 13 11 9 17 17 C 1.53043 * 109.53296 * 61.37074 * 8 7 6 18 18 C 1.46927 * 120.63120 * 355.70596 * 5 3 2 19 19 C 1.54630 * 111.07001 * 123.99313 * 2 1 3 20 20 C 1.51103 * 104.72624 * 142.68171 * 19 2 1 21 21 C 1.30525 * 111.10262 * 343.55925 * 20 19 2 22 22 C 1.51104 * 111.10479 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47044 * 66.99692 * 1 2 3 24 24 H 1.08998 * 109.46905 * 186.99481 * 1 2 3 25 25 H 1.08998 * 109.46910 * 306.99474 * 1 2 3 26 26 H 1.09001 * 109.58499 * 113.79817 * 6 5 3 27 27 H 1.09005 * 109.58357 * 353.38254 * 6 5 3 28 28 H 1.08997 * 109.50162 * 65.31324 * 7 6 5 29 29 H 1.09003 * 109.49902 * 185.41559 * 7 6 5 30 30 H 1.08991 * 109.46107 * 301.34515 * 8 7 6 31 31 H 0.97002 * 119.99964 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.49375 * 178.68528 * 17 8 7 33 33 H 1.08997 * 109.50459 * 58.58381 * 17 8 7 34 34 H 1.08996 * 109.59140 * 246.19803 * 18 5 3 35 35 H 1.09001 * 109.59055 * 6.62747 * 18 5 3 36 36 H 1.09000 * 110.38541 * 261.48663 * 19 2 1 37 37 H 1.08998 * 110.39103 * 23.86992 * 19 2 1 38 38 H 1.08003 * 124.44975 * 163.58523 * 20 19 2 39 39 H 1.08008 * 124.44878 * 180.02562 * 21 20 19 40 40 H 1.09004 * 110.38470 * 257.62451 * 22 21 20 41 41 H 1.08997 * 110.38421 * 135.24944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4077 0.0000 4 8 2.7058 1.8132 -0.9486 5 7 1.8404 2.2161 1.0540 6 6 2.4360 3.5580 1.1108 7 6 3.1978 3.7039 2.4317 8 6 2.2576 3.3840 3.5962 9 6 2.9944 3.5595 4.8991 10 1 4.0291 3.8687 4.8969 11 6 2.3474 3.3254 6.0938 12 7 2.9904 3.4781 7.2308 13 14 0.5578 2.7899 6.0976 14 1 0.4845 1.3074 6.0530 15 1 -0.1034 3.2812 7.3332 16 1 -0.1306 3.3555 4.9095 17 6 1.7695 1.9384 3.4774 18 6 0.9914 1.7724 2.1681 19 6 2.0859 -0.8067 1.1963 20 6 3.3085 -1.5081 0.6517 21 6 3.3080 -1.5079 -0.6535 22 6 2.0853 -0.8059 -1.1970 23 1 -0.3633 0.4016 -0.9460 24 1 -0.3633 -1.0200 0.1251 25 1 -0.3633 0.6184 0.8208 26 1 1.6486 4.3098 1.0580 27 1 3.1244 3.6878 0.2756 28 1 4.0405 3.0128 2.4440 29 1 3.5635 4.7261 2.5298 30 1 1.4027 4.0594 3.5688 31 1 2.5353 3.3130 8.0714 32 1 1.1185 1.7039 4.3196 33 1 2.6256 1.2638 3.4798 34 1 0.0862 2.3786 2.2017 35 1 0.7267 0.7240 2.0308 36 1 2.3636 -0.1366 2.0099 37 1 1.3506 -1.5354 1.5375 38 1 4.0811 -1.9516 1.2623 39 1 4.0802 -1.9513 -1.2648 40 1 1.3494 -1.5342 -1.5379 41 1 2.3626 -0.1357 -2.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935317862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:42 Heat of formation + Delta-G solvation = -13.409818 kcal Electronic energy + Delta-G solvation = -21201.916108 eV Core-core repulsion = 18275.086987 eV Total energy + Delta-G solvation = -2926.829121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.82998 -38.01145 -36.83334 -33.69409 -32.27948 -31.23625 -30.38035 -28.12977 -26.68341 -25.61454 -23.49686 -22.69132 -21.38554 -19.73021 -18.86061 -18.20152 -16.76689 -16.58859 -16.10832 -15.40086 -14.88951 -14.66239 -14.03786 -13.69909 -13.38316 -13.23449 -12.93626 -12.73690 -12.63098 -12.40347 -12.17279 -12.09647 -11.90851 -11.68931 -11.28215 -11.13296 -11.02609 -10.76927 -10.61362 -10.20140 -10.14276 -9.77958 -9.47713 -9.30778 -9.09598 -8.85224 -8.59647 -8.18287 -6.12185 -4.11539 2.29659 2.85707 3.17646 3.26894 3.29094 3.34992 4.33985 4.38604 4.54590 4.62599 4.97272 5.13499 5.23598 5.30227 5.37799 5.50466 5.56911 5.61499 5.66060 5.69756 5.71350 5.79432 5.83775 5.88719 5.97560 5.98242 6.07677 6.10785 6.17850 6.28764 6.53374 6.62326 6.63173 6.74723 6.88452 6.91464 7.15906 7.45334 7.69231 7.75356 8.43673 8.47530 8.92368 9.49638 11.01241 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.006401 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.635865 B = 4373.154979 C = 4603.577119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C 0.531 3.469 4 O -0.550 6.550 5 N -0.598 5.598 6 C 0.109 3.891 7 C -0.113 4.113 8 C 0.015 3.985 9 C -0.513 4.513 10 H 0.073 0.927 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.885 3.115 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.265 1.265 17 C -0.136 4.136 18 C 0.088 3.912 19 C -0.101 4.101 20 C -0.168 4.168 21 C -0.163 4.163 22 C -0.083 4.083 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.079 0.921 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -9.005 -13.240 17.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C 0.319 3.681 4 O -0.428 6.428 5 N -0.330 5.330 6 C -0.013 4.013 7 C -0.151 4.151 8 C -0.004 4.004 9 C -0.551 4.551 10 H 0.092 0.908 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.715 3.285 14 H -0.205 1.205 15 H -0.225 1.225 16 H -0.190 1.190 17 C -0.174 4.174 18 C -0.034 4.034 19 C -0.138 4.138 20 C -0.185 4.185 21 C -0.180 4.180 22 C -0.120 4.120 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.097 0.903 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.538 -8.767 -13.535 17.050 hybrid contribution -0.877 -0.378 0.420 1.043 sum -6.415 -9.145 -13.115 17.227 Atomic orbital electron populations 1.22051 0.92023 1.03039 1.03183 1.21557 0.96863 0.92737 0.97966 1.20165 0.79508 0.86527 0.81924 1.90617 1.41558 1.75972 1.34671 1.48035 1.49235 1.16173 1.19583 1.21768 0.97479 0.82233 0.99847 1.21827 0.98650 1.01647 0.92988 1.19124 0.95393 0.91148 0.94713 1.21046 0.99551 1.46119 0.88345 0.90848 1.25043 0.97755 0.94966 0.95557 1.69900 1.36910 1.49501 0.97540 0.86882 0.85979 0.78568 0.77048 1.20496 1.22451 1.18986 1.22416 0.99398 1.01889 0.93723 1.22300 0.93493 1.00230 0.87385 1.21737 0.96208 0.98445 0.97387 1.23243 0.98379 1.00658 0.96262 1.23213 0.98373 1.00287 0.96176 1.21334 0.95421 0.97695 0.97533 0.91879 0.91290 0.90894 0.92074 0.89944 0.92332 0.91336 0.95404 0.92653 0.92390 0.91537 0.91813 0.89357 0.89309 0.89629 0.85696 0.85899 0.90296 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.13 37.16 0.30 -1.24 16 2 C -0.09 -1.16 0.58 -153.95 -0.09 -1.25 16 3 C 0.53 8.86 6.54 -10.99 -0.07 8.79 16 4 O -0.55 -10.72 14.94 5.55 0.08 -10.64 16 5 N -0.60 -10.03 2.92 -172.77 -0.50 -10.54 16 6 C 0.11 1.88 6.42 -3.71 -0.02 1.85 16 7 C -0.11 -2.20 5.30 -26.61 -0.14 -2.34 16 8 C 0.02 0.33 1.66 -91.72 -0.15 0.18 16 9 C -0.51 -13.87 9.14 -34.44 -0.31 -14.18 16 10 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 12 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 13 Si 0.88 20.80 24.38 -169.99 -4.14 16.65 16 14 H -0.28 -6.25 6.86 56.52 0.39 -5.86 16 15 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.26 -5.85 6.53 56.52 0.37 -5.48 16 17 C -0.14 -2.69 4.65 -26.61 -0.12 -2.81 16 18 C 0.09 1.41 4.07 -3.71 -0.02 1.39 16 19 C -0.10 -1.29 4.66 -26.83 -0.12 -1.41 16 20 C -0.17 -2.11 10.78 -35.70 -0.38 -2.49 16 21 C -0.16 -1.98 10.78 -35.70 -0.38 -2.37 16 22 C -0.08 -1.01 5.79 -26.83 -0.16 -1.17 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.59 7.98 -51.93 -0.41 0.18 16 25 H 0.07 0.78 5.20 -51.93 -0.27 0.51 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 33 H 0.07 1.33 7.15 -51.93 -0.37 0.96 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.20 3.31 -51.93 -0.17 1.03 16 36 H 0.09 1.29 4.90 -51.93 -0.25 1.04 16 37 H 0.09 0.92 7.78 -51.93 -0.40 0.51 16 38 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 41 H 0.09 1.22 6.92 -51.93 -0.36 0.86 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -30.79 302.34 -7.13 -37.92 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.12 Total: 3.47 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.78 Total: -15.24 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.27 Total: -36.72 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.79 -7.13 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.512 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds