Wall clock time and date at job start Mon Mar 30 2020 00:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 110.91524 * 2 1 4 4 O 1.21283 * 119.99821 * 244.57231 * 3 2 1 5 5 N 1.34769 * 119.99971 * 64.56686 * 3 2 1 6 6 C 1.46924 * 120.63328 * 175.72488 * 5 3 2 7 7 C 1.53186 * 108.77955 * 233.59096 * 6 5 3 8 8 C 1.53048 * 109.31096 * 305.36017 * 7 6 5 9 9 C 1.50704 * 109.46030 * 181.38472 * 8 7 6 10 10 H 1.07998 * 119.99484 * 0.02562 * 9 8 7 11 11 C 1.37868 * 120.00100 * 180.02562 * 9 8 7 12 12 N 1.31513 * 120.00008 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99982 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47405 * 89.99583 * 13 11 9 15 15 H 1.48501 * 109.47355 * 209.99783 * 13 11 9 16 16 H 1.48509 * 109.47000 * 329.99582 * 13 11 9 17 17 C 1.53043 * 109.53296 * 61.37074 * 8 7 6 18 18 C 1.46927 * 120.63120 * 355.70596 * 5 3 2 19 19 C 1.54630 * 111.07001 * 123.99313 * 2 1 3 20 20 C 1.51103 * 104.72624 * 142.68171 * 19 2 1 21 21 C 1.30525 * 111.10262 * 343.55925 * 20 19 2 22 22 C 1.51104 * 111.10479 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.47044 * 66.99692 * 1 2 3 24 24 H 1.08998 * 109.46905 * 186.99481 * 1 2 3 25 25 H 1.08998 * 109.46910 * 306.99474 * 1 2 3 26 26 H 1.09001 * 109.58499 * 113.79817 * 6 5 3 27 27 H 1.09005 * 109.58357 * 353.38254 * 6 5 3 28 28 H 1.08997 * 109.50162 * 65.31324 * 7 6 5 29 29 H 1.09003 * 109.49902 * 185.41559 * 7 6 5 30 30 H 1.08991 * 109.46107 * 301.34515 * 8 7 6 31 31 H 0.97002 * 119.99964 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.49375 * 178.68528 * 17 8 7 33 33 H 1.08997 * 109.50459 * 58.58381 * 17 8 7 34 34 H 1.08996 * 109.59140 * 246.19803 * 18 5 3 35 35 H 1.09001 * 109.59055 * 6.62747 * 18 5 3 36 36 H 1.09000 * 110.38541 * 261.48663 * 19 2 1 37 37 H 1.08998 * 110.39103 * 23.86992 * 19 2 1 38 38 H 1.08003 * 124.44975 * 163.58523 * 20 19 2 39 39 H 1.08008 * 124.44878 * 180.02562 * 21 20 19 40 40 H 1.09004 * 110.38470 * 257.62451 * 22 21 20 41 41 H 1.08997 * 110.38421 * 135.24944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4077 0.0000 4 8 2.7058 1.8132 -0.9486 5 7 1.8404 2.2161 1.0540 6 6 2.4360 3.5580 1.1108 7 6 3.1978 3.7039 2.4317 8 6 2.2576 3.3840 3.5962 9 6 2.9944 3.5595 4.8991 10 1 4.0291 3.8687 4.8969 11 6 2.3474 3.3254 6.0938 12 7 2.9904 3.4781 7.2308 13 14 0.5578 2.7899 6.0976 14 1 0.4845 1.3074 6.0530 15 1 -0.1034 3.2812 7.3332 16 1 -0.1306 3.3555 4.9095 17 6 1.7695 1.9384 3.4774 18 6 0.9914 1.7724 2.1681 19 6 2.0859 -0.8067 1.1963 20 6 3.3085 -1.5081 0.6517 21 6 3.3080 -1.5079 -0.6535 22 6 2.0853 -0.8059 -1.1970 23 1 -0.3633 0.4016 -0.9460 24 1 -0.3633 -1.0200 0.1251 25 1 -0.3633 0.6184 0.8208 26 1 1.6486 4.3098 1.0580 27 1 3.1244 3.6878 0.2756 28 1 4.0405 3.0128 2.4440 29 1 3.5635 4.7261 2.5298 30 1 1.4027 4.0594 3.5688 31 1 2.5353 3.3130 8.0714 32 1 1.1185 1.7039 4.3196 33 1 2.6256 1.2638 3.4798 34 1 0.0862 2.3786 2.2017 35 1 0.7267 0.7240 2.0308 36 1 2.3636 -0.1366 2.0099 37 1 1.3506 -1.5354 1.5375 38 1 4.0811 -1.9516 1.2623 39 1 4.0802 -1.9513 -1.2648 40 1 1.3494 -1.5342 -1.5379 41 1 2.3626 -0.1357 -2.0107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935317862.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:41 Heat of formation + Delta-G solvation = -32.298561 kcal Electronic energy + Delta-G solvation = -21202.735186 eV Core-core repulsion = 18275.086987 eV Total energy + Delta-G solvation = -2927.648199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.01850 -39.27242 -38.20843 -35.40468 -33.75418 -32.79210 -31.68214 -29.09309 -28.37691 -26.56010 -25.04303 -24.18724 -22.78310 -21.13179 -19.93610 -19.46584 -18.80738 -17.76761 -17.36887 -16.55728 -16.45512 -16.08316 -15.34778 -15.24000 -14.96672 -14.46200 -14.34185 -14.14010 -13.77587 -13.64665 -13.56070 -13.26401 -13.10365 -12.92048 -12.71452 -12.31535 -12.18719 -12.10128 -12.03566 -11.77743 -11.59813 -11.49563 -11.14163 -11.02622 -10.69819 -10.58350 -9.80211 -9.59784 -8.27183 -6.32571 1.32549 1.36777 1.40461 1.50856 1.59672 2.02237 2.35899 3.07721 3.38801 3.48074 3.66835 3.95960 4.05183 4.11112 4.18745 4.25336 4.34661 4.41601 4.45209 4.58196 4.68753 4.72066 4.76228 4.78497 4.81299 4.92154 4.93990 4.95605 5.01638 5.07342 5.14421 5.15840 5.28618 5.38953 5.56693 5.63283 5.67661 5.75097 5.97204 6.32038 6.45185 6.74284 7.14858 7.33005 8.89984 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.006401 C = 0.006081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.635865 B = 4373.154979 C = 4603.577119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.087 4.087 3 C 0.525 3.475 4 O -0.584 6.584 5 N -0.602 5.602 6 C 0.116 3.884 7 C -0.106 4.106 8 C 0.015 3.985 9 C -0.521 4.521 10 H 0.024 0.976 11 C 0.006 3.994 12 N -0.954 5.954 13 Si 0.950 3.050 14 H -0.256 1.256 15 H -0.304 1.304 16 H -0.235 1.235 17 C -0.133 4.133 18 C 0.095 3.905 19 C -0.101 4.101 20 C -0.183 4.183 21 C -0.168 4.168 22 C -0.082 4.082 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -10.833 -14.791 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.090 4.090 3 C 0.315 3.685 4 O -0.465 6.465 5 N -0.333 5.333 6 C -0.007 4.007 7 C -0.144 4.144 8 C -0.004 4.004 9 C -0.559 4.559 10 H 0.043 0.957 11 C -0.190 4.190 12 N -0.595 5.595 13 Si 0.776 3.224 14 H -0.182 1.182 15 H -0.232 1.232 16 H -0.158 1.158 17 C -0.171 4.171 18 C -0.027 4.027 19 C -0.138 4.138 20 C -0.201 4.201 21 C -0.185 4.185 22 C -0.119 4.119 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.125 0.875 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.640 -10.603 -15.112 20.382 hybrid contribution 0.276 0.254 0.901 0.976 sum -8.364 -10.349 -14.212 19.468 Atomic orbital electron populations 1.22088 0.89526 1.04945 1.03516 1.21649 0.98730 0.90122 0.98534 1.20899 0.78720 0.87756 0.81139 1.90602 1.43012 1.76900 1.35951 1.48117 1.49294 1.15907 1.20012 1.21621 0.97779 0.83537 0.97739 1.21699 0.97954 1.00937 0.93840 1.19083 0.95311 0.93257 0.92730 1.21358 0.97950 1.45433 0.91186 0.95731 1.26013 1.03262 0.94990 0.94766 1.70080 1.39396 1.51543 0.98462 0.85825 0.79412 0.79428 0.77758 1.18176 1.23218 1.15795 1.22255 0.99505 0.99283 0.96032 1.22362 0.92971 1.02632 0.84693 1.21783 0.96982 0.98562 0.96486 1.23408 0.98858 1.01226 0.96639 1.23439 0.98749 1.00029 0.96326 1.21372 0.96137 0.97777 0.96578 0.91519 0.88512 0.90720 0.90173 0.90375 0.94248 0.91698 0.94915 0.92653 0.92669 0.92678 0.89887 0.86322 0.91272 0.86883 0.85201 0.84731 0.87470 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.13 71.98 0.59 -1.77 16 2 C -0.09 -2.01 0.58 -51.82 -0.03 -2.04 16 3 C 0.53 16.48 6.54 87.66 0.57 17.05 16 4 O -0.58 -22.26 14.94 -3.04 -0.05 -22.31 16 5 N -0.60 -18.82 2.92 -818.90 -2.39 -21.21 16 6 C 0.12 3.84 6.42 86.36 0.55 4.40 16 7 C -0.11 -4.17 5.30 30.67 0.16 -4.01 16 8 C 0.02 0.66 1.66 -11.51 -0.02 0.64 16 9 C -0.52 -29.11 9.14 25.60 0.23 -28.88 16 10 H 0.02 1.55 7.99 -2.91 -0.02 1.53 16 11 C 0.01 0.34 5.45 84.65 0.46 0.80 16 12 N -0.95 -59.15 13.96 21.44 0.30 -58.85 16 13 Si 0.95 41.83 24.38 68.60 1.67 43.50 16 14 H -0.26 -10.36 6.86 99.48 0.68 -9.67 16 15 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 16 H -0.23 -9.13 6.53 99.48 0.65 -8.48 16 17 C -0.13 -4.95 4.65 30.68 0.14 -4.81 16 18 C 0.10 2.69 4.07 86.36 0.35 3.04 16 19 C -0.10 -2.27 4.66 30.53 0.14 -2.12 16 20 C -0.18 -4.24 10.78 26.26 0.28 -3.95 16 21 C -0.17 -3.73 10.78 26.26 0.28 -3.45 16 22 C -0.08 -1.78 5.79 30.53 0.18 -1.60 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 1.09 7.98 -2.39 -0.02 1.07 16 25 H 0.07 1.21 5.20 -2.39 -0.01 1.19 16 26 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.08 2.69 7.03 -2.38 -0.02 2.67 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.06 2.10 3.24 -2.39 -0.01 2.09 16 33 H 0.05 2.16 7.15 -2.39 -0.02 2.15 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.12 2.68 3.31 -2.39 -0.01 2.67 16 36 H 0.07 1.84 4.90 -2.39 -0.01 1.83 16 37 H 0.11 1.90 7.78 -2.39 -0.02 1.88 16 38 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.11 1.71 7.89 -2.39 -0.02 1.70 16 41 H 0.07 1.80 6.92 -2.39 -0.02 1.78 16 Total: -1.00 -69.58 302.34 4.37 -65.20 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.94 Total: 20.36 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.90 Total: -26.69 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.09 Total: -80.06 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.67 Total: 43.50 kcal Total: -69.58 4.37 -65.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317862.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.904 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds