Wall clock time and date at job start Mon Mar 30 2020 00:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46838 * 40.96397 * 3 2 1 5 5 C 1.37095 * 119.99713 * 263.45736 * 4 3 2 6 6 H 1.08001 * 120.00242 * 200.07593 * 5 4 3 7 7 C 1.38960 * 119.99967 * 20.08466 * 5 4 3 8 8 N 1.31410 * 120.00060 * 12.68375 * 7 5 4 9 9 Si 1.86801 * 119.99709 * 192.68391 * 7 5 4 10 10 H 1.48501 * 109.47302 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46847 * 119.99728 * 9 7 5 12 12 H 1.48498 * 109.47368 * 239.99753 * 9 7 5 13 13 C 1.34769 * 120.00214 * 83.46417 * 4 3 2 14 14 O 1.21294 * 119.99853 * 4.55304 * 13 4 3 15 15 C 1.50698 * 120.00245 * 184.55591 * 13 4 3 16 16 C 1.52998 * 115.55039 * 65.78349 * 15 13 4 17 17 C 1.53005 * 117.49622 * 280.11616 * 15 13 4 18 18 C 1.52996 * 117.49708 * 359.97438 * 17 15 13 19 19 C 1.52998 * 117.49823 * 145.01727 * 17 15 13 20 20 C 1.53001 * 117.49828 * 211.45751 * 15 13 4 21 21 C 1.52997 * 117.49801 * 214.97396 * 20 15 13 22 22 C 1.53001 * 117.50164 * 359.97338 * 20 15 13 23 23 H 4.40639 * 5.51405 * 180.02562 * 4 1 2 24 24 H 1.08994 * 109.47196 * 280.96648 * 3 2 1 25 25 H 1.08994 * 109.47021 * 160.95947 * 3 2 1 26 26 H 0.97000 * 119.99770 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47065 * 58.65105 * 16 15 13 28 28 H 1.09002 * 109.46885 * 178.64971 * 16 15 13 29 29 H 1.08998 * 109.47235 * 298.64761 * 16 15 13 30 30 H 1.09001 * 109.47426 * 70.20347 * 18 17 15 31 31 H 1.09005 * 109.46765 * 190.19930 * 18 17 15 32 32 H 1.08993 * 109.47501 * 310.19442 * 18 17 15 33 33 H 1.09002 * 109.46834 * 67.63639 * 19 17 15 34 34 H 1.09002 * 109.47148 * 187.63454 * 19 17 15 35 35 H 1.08992 * 109.47615 * 307.64172 * 19 17 15 36 36 H 1.09000 * 109.46854 * 68.49110 * 21 20 15 37 37 H 1.08995 * 109.47231 * 188.48776 * 21 20 15 38 38 H 1.09007 * 109.47517 * 308.49060 * 21 20 15 39 39 H 1.09008 * 109.46910 * 56.92664 * 22 20 15 40 40 H 1.08996 * 109.46991 * 176.92483 * 22 20 15 41 41 H 1.08999 * 109.46963 * 296.92820 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -1.0422 -0.9056 5 6 3.4914 -2.2693 -0.4089 6 1 4.1390 -2.9163 -0.9819 7 6 3.0193 -2.6806 0.8316 8 7 2.0454 -2.0198 1.4161 9 14 3.7694 -4.1728 1.6684 10 1 4.8414 -4.7358 0.8086 11 1 4.3442 -3.7697 2.9770 12 1 2.7185 -5.1995 1.8845 13 6 3.2341 -0.7952 -2.2267 14 8 2.9980 0.3146 -2.6556 15 6 3.6383 -1.8977 -3.1712 16 6 2.6453 -3.0547 -3.2985 17 6 5.1282 -2.2312 -3.2713 18 6 6.0936 -1.4193 -2.4054 19 6 5.5110 -3.6960 -3.4917 20 6 4.4274 -1.5032 -4.4212 21 6 4.1636 -2.2962 -5.7027 22 6 4.7452 -0.0194 -4.6170 23 1 -1.0498 -0.0001 -0.0004 24 1 3.0095 -0.1947 1.0088 25 1 3.0090 0.9722 -0.3352 26 1 1.7162 -2.3068 2.2822 27 1 1.6829 -2.6717 -3.6378 28 1 3.0227 -3.7796 -4.0197 29 1 2.5230 -3.5369 -2.3286 30 1 5.9585 -1.6907 -1.3584 31 1 7.1192 -1.6329 -2.7066 32 1 5.8910 -0.3562 -2.5343 33 1 5.1900 -4.0099 -4.4849 34 1 6.5922 -3.8056 -3.4077 35 1 5.0234 -4.3161 -2.7395 36 1 3.1588 -2.0782 -6.0644 37 1 4.8925 -2.0128 -6.4619 38 1 4.2515 -3.3626 -5.4947 39 1 5.2925 0.3524 -3.7506 40 1 5.3536 0.1067 -5.5125 41 1 3.8161 0.5397 -4.7272 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935812398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:19 Heat of formation + Delta-G solvation = 54.634204 kcal Electronic energy + Delta-G solvation = -21614.545191 eV Core-core repulsion = 18690.666680 eV Total energy + Delta-G solvation = -2923.878511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.14220 -37.37023 -34.95899 -31.86708 -31.38362 -30.51012 -29.90494 -28.50990 -26.36152 -25.58846 -25.17250 -24.39657 -20.71687 -18.52927 -17.51244 -17.16025 -16.16285 -15.64135 -15.08721 -14.38833 -14.30092 -14.09962 -13.58026 -13.36852 -13.22420 -12.60245 -12.03610 -11.97132 -11.89823 -11.84524 -11.71677 -11.62611 -11.36940 -11.36140 -11.22387 -11.13511 -11.07092 -10.88446 -10.42464 -10.40258 -9.97685 -9.33812 -9.26954 -8.93614 -8.72566 -8.63465 -8.08959 -7.81951 -6.30682 -3.91212 3.08860 3.20610 3.22973 3.69701 3.98405 4.16111 4.24175 4.32953 4.88890 5.05586 5.14851 5.23794 5.44132 5.54546 5.59102 5.72855 5.93383 5.98636 6.07852 6.11638 6.18348 6.20893 6.31778 6.34869 6.36128 6.40881 6.49228 6.61173 6.64203 6.66315 6.72232 6.83302 6.88808 7.00307 7.03891 7.17920 7.24148 7.46562 7.75471 8.41084 9.02229 9.09732 9.52523 9.92761 10.68342 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.009585 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.998365 B = 2920.660617 C = 3787.395233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.092 4.092 3 C 0.240 3.760 4 N -0.436 5.436 5 C -0.324 4.324 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.862 5.862 9 Si 0.915 3.085 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.502 3.498 14 O -0.598 6.598 15 C -0.101 4.101 16 C -0.108 4.108 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.109 4.109 23 H 0.196 0.804 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.267 0.733 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.038 0.962 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -2.594 -6.308 8.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.093 4.093 3 C 0.118 3.882 4 N -0.153 5.153 5 C -0.452 4.452 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.500 5.500 9 Si 0.742 3.258 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.484 6.484 15 C -0.104 4.104 16 C -0.166 4.166 17 C -0.103 4.103 18 C -0.181 4.181 19 C -0.177 4.177 20 C -0.106 4.106 21 C -0.174 4.174 22 C -0.166 4.166 23 H 0.213 0.787 24 H 0.129 0.871 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.897 -2.070 -6.291 8.236 hybrid contribution -0.145 -0.992 0.745 1.249 sum 4.753 -3.062 -5.545 7.919 Atomic orbital electron populations 1.24164 0.95327 1.05483 1.05162 1.23213 0.94381 0.95638 0.96114 1.18112 0.84037 0.89923 0.96165 1.43602 1.55570 1.12157 1.03938 1.19754 1.28369 0.94195 1.02898 0.87710 1.25312 0.95227 0.98692 0.97996 1.70044 1.23330 1.39951 1.16711 0.86046 0.79034 0.81277 0.79481 1.19211 1.20693 1.20919 1.19160 0.81781 0.87799 0.82199 1.90512 1.56494 1.24401 1.76968 1.21347 0.93238 0.97918 0.97861 1.21248 0.97019 0.95579 1.02717 1.21661 0.93101 0.95599 0.99987 1.21512 0.96670 0.99715 1.00161 1.21482 1.00713 0.93864 1.01673 1.21729 1.03138 0.96041 0.89737 1.21424 1.01115 0.99553 0.95266 1.21393 1.01870 0.93062 1.00240 0.78699 0.87104 0.92098 0.92184 0.93195 0.92897 0.90232 0.90838 0.93250 0.91853 0.91955 0.92773 0.91934 0.92519 0.92780 0.91743 0.91910 0.94262 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.56 19.25 29.55 0.57 -5.99 16 2 C -0.09 -2.30 11.57 -37.12 -0.43 -2.73 16 3 C 0.24 5.87 5.09 -6.82 -0.03 5.83 16 4 N -0.44 -10.65 2.60 -117.93 -0.31 -10.95 16 5 C -0.32 -7.79 7.08 -14.93 -0.11 -7.89 16 6 H 0.11 2.42 5.38 -52.49 -0.28 2.14 16 7 C 0.03 0.78 5.07 -17.46 -0.09 0.69 16 8 N -0.86 -22.00 9.11 55.50 0.51 -21.49 16 9 Si 0.91 19.07 29.57 -169.99 -5.03 14.04 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 13 C 0.50 11.93 5.38 -10.99 -0.06 11.87 16 14 O -0.60 -15.50 13.89 5.55 0.08 -15.42 16 15 C -0.10 -2.00 1.38 -155.66 -0.22 -2.22 16 16 C -0.11 -2.04 8.34 37.16 0.31 -1.73 16 17 C -0.10 -1.78 1.83 -154.47 -0.28 -2.06 16 18 C -0.12 -2.15 8.57 37.16 0.32 -1.84 16 19 C -0.12 -1.77 8.49 37.16 0.32 -1.46 16 20 C -0.11 -1.84 2.70 -154.47 -0.42 -2.25 16 21 C -0.12 -1.66 8.52 37.16 0.32 -1.34 16 22 C -0.11 -1.93 8.00 37.16 0.30 -1.64 16 23 H 0.20 3.73 7.80 -54.10 -0.42 3.31 16 24 H 0.11 2.75 6.30 -51.93 -0.33 2.42 16 25 H 0.06 1.45 7.56 -51.93 -0.39 1.05 16 26 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.83 5.52 -51.93 -0.29 0.54 16 29 H 0.08 1.63 6.53 -51.93 -0.34 1.29 16 30 H 0.07 1.39 6.97 -51.93 -0.36 1.02 16 31 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.06 1.17 5.00 -51.93 -0.26 0.91 16 33 H 0.06 0.82 4.94 -51.93 -0.26 0.56 16 34 H 0.05 0.71 7.96 -51.93 -0.41 0.30 16 35 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.06 0.84 4.28 -51.93 -0.22 0.62 16 39 H 0.06 1.17 4.98 -51.92 -0.26 0.92 16 40 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 41 H 0.07 1.42 7.00 -51.93 -0.36 1.06 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -28.02 314.74 -5.35 -33.37 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -5.84 Total: 8.46 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 0.49 Total: -12.75 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.20 Total: -32.44 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.02 -5.35 -33.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.002 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds