Wall clock time and date at job start Mon Mar 30 2020 00:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38260 * 120.00103 * 2 1 4 4 C 1.38206 * 120.00312 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99730 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99662 * 179.97438 * 5 4 3 7 7 C 1.38206 * 120.00381 * 359.97438 * 5 4 3 8 8 C 1.50703 * 120.00464 * 179.97438 * 7 5 4 9 9 N 1.46901 * 109.46752 * 79.99798 * 8 7 5 10 10 C 1.46900 * 110.99951 * 66.05189 * 9 8 7 11 11 C 1.46906 * 110.99396 * 190.00084 * 9 8 7 12 12 C 1.52998 * 109.46836 * 170.00522 * 11 9 8 13 13 H 1.09004 * 109.47223 * 59.99693 * 12 11 9 14 14 O 1.42910 * 109.47077 * 299.99984 * 12 11 9 15 15 C 1.50696 * 109.47188 * 180.02562 * 12 11 9 16 16 H 1.07995 * 120.00332 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99983 * 180.02562 * 15 12 11 18 18 N 1.31517 * 120.00210 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00019 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46845 * 269.99914 * 19 17 15 21 21 H 1.48503 * 109.47399 * 29.99403 * 19 17 15 22 22 H 1.48498 * 109.47295 * 150.00010 * 19 17 15 23 23 C 1.38209 * 120.00353 * 180.27296 * 2 1 3 24 24 H 1.09002 * 109.46683 * 90.00321 * 1 2 3 25 25 H 1.08998 * 109.47051 * 209.99790 * 1 2 3 26 26 H 1.09001 * 109.47350 * 330.00400 * 1 2 3 27 27 H 1.08003 * 119.99698 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.00391 * 179.97438 * 4 3 2 29 29 H 1.08992 * 109.47063 * 270.01765 * 6 5 4 30 30 H 1.08997 * 109.46936 * 30.01978 * 6 5 4 31 31 H 1.09006 * 109.46710 * 150.01586 * 6 5 4 32 32 H 1.09002 * 109.46685 * 320.00148 * 8 7 5 33 33 H 1.08995 * 109.47310 * 200.00386 * 8 7 5 34 34 H 1.08997 * 109.47106 * 183.94474 * 10 9 8 35 35 H 1.09001 * 109.46989 * 303.95194 * 10 9 8 36 36 H 1.09002 * 109.47006 * 63.94651 * 10 9 8 37 37 H 1.08996 * 109.47057 * 50.00856 * 11 9 8 38 38 H 1.08997 * 109.47577 * 290.00213 * 11 9 8 39 39 H 0.96696 * 113.99416 * 300.00064 * 14 12 11 40 40 H 0.97000 * 119.99462 * 359.97438 * 18 17 15 41 41 H 1.08003 * 119.99922 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 3.5807 -1.1969 -0.0016 8 6 4.3342 -2.5020 -0.0034 9 7 4.7889 -2.8067 1.3599 10 6 3.6488 -3.0626 2.2502 11 6 5.7233 -3.9402 1.3620 12 6 6.3639 -4.0704 2.7454 13 1 5.5869 -4.2385 3.4912 14 8 7.0717 -2.8688 3.0576 15 6 7.3229 -5.2327 2.7475 16 1 7.4615 -5.8202 1.8520 17 6 8.0228 -5.5469 3.8932 18 7 7.8538 -4.8319 4.9840 19 14 9.2112 -6.9882 3.8960 20 1 8.4901 -8.2234 4.2956 21 1 9.7786 -7.1647 2.5351 22 1 10.3093 -6.7225 4.8597 23 6 2.1981 -1.1969 -0.0057 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6583 2.1327 -0.0004 28 1 4.1204 2.1326 -0.0010 29 1 6.1412 0.0009 -1.0306 30 1 6.1424 0.8897 0.5115 31 1 6.1425 -0.8903 0.5102 32 1 5.1968 -2.4226 -0.6649 33 1 3.6792 -3.2993 -0.3547 34 1 4.0094 -3.2163 3.2673 35 1 2.9727 -2.2079 2.2296 36 1 3.1183 -3.9536 1.9143 37 1 6.5003 -3.7720 0.6163 38 1 5.1835 -4.8567 1.1240 39 1 7.7796 -2.6562 2.4342 40 1 7.2370 -4.0833 4.9824 41 1 1.6581 -2.1322 -0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119768554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:23:09 Heat of formation + Delta-G solvation = -59.907244 kcal Electronic energy + Delta-G solvation = -20067.349969 eV Core-core repulsion = 17138.504568 eV Total energy + Delta-G solvation = -2928.845401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80244 -38.98961 -36.96592 -34.70403 -34.21327 -32.57998 -30.19796 -29.96444 -28.37692 -26.76312 -25.58479 -24.38324 -22.85932 -22.06096 -20.70148 -19.37483 -17.20040 -17.03876 -16.68407 -16.57489 -15.98661 -15.82263 -15.60198 -15.19595 -14.84550 -14.59804 -14.17033 -14.05965 -13.89403 -13.75120 -13.52851 -13.36902 -12.87820 -12.76137 -12.67305 -12.62061 -12.48637 -12.27815 -12.03594 -11.91973 -11.80962 -11.67052 -11.15211 -10.61289 -10.06759 -9.72270 -9.29196 -9.14579 -8.60257 -6.45184 0.43698 0.49334 1.53439 1.61885 1.79727 2.55403 2.71251 3.16840 3.21869 3.80453 3.88131 4.03808 4.07326 4.16082 4.17366 4.26916 4.33225 4.39559 4.44892 4.59431 4.65609 4.69412 4.77118 4.83209 4.86134 4.86427 4.88948 4.93301 4.96348 5.21169 5.23983 5.44522 5.48064 5.55612 5.70323 5.81329 5.82850 6.03609 6.14071 6.18098 6.22212 6.57723 7.27308 7.53384 8.77318 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.037210 B = 0.004169 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.300625 B = 6715.038385 C = 6982.165096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.104 4.104 3 C -0.124 4.124 4 C -0.129 4.129 5 C -0.081 4.081 6 C -0.116 4.116 7 C -0.085 4.085 8 C 0.095 3.905 9 N -0.529 5.529 10 C 0.034 3.966 11 C 0.055 3.945 12 C 0.222 3.778 13 H 0.017 0.983 14 O -0.580 6.580 15 C -0.661 4.661 16 H 0.050 0.950 17 C -0.017 4.017 18 N -0.922 5.922 19 Si 1.118 2.882 20 H -0.275 1.275 21 H -0.268 1.268 22 H -0.285 1.285 23 C -0.123 4.123 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.359 0.641 40 H 0.267 0.733 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 9.926 -13.170 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.142 4.142 4 C -0.146 4.146 5 C -0.082 4.082 6 C -0.173 4.173 7 C -0.086 4.086 8 C -0.032 4.032 9 N -0.253 5.253 10 C -0.114 4.114 11 C -0.073 4.073 12 C 0.164 3.836 13 H 0.035 0.965 14 O -0.385 6.385 15 C -0.699 4.699 16 H 0.069 0.931 17 C -0.219 4.219 18 N -0.557 5.557 19 Si 0.940 3.060 20 H -0.201 1.201 21 H -0.193 1.193 22 H -0.211 1.211 23 C -0.142 4.142 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.205 0.795 40 H 0.078 0.922 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.920 9.509 -11.556 18.526 hybrid contribution -1.106 -0.037 -1.396 1.781 sum -12.026 9.472 -12.952 20.052 Atomic orbital electron populations 1.20789 0.89431 1.03341 1.02990 1.20170 0.97394 0.92760 1.00062 1.21290 0.94067 0.98281 1.00536 1.21279 0.94756 0.97684 1.00923 1.19946 0.96678 0.92749 0.98828 1.20824 0.90968 1.03315 1.02182 1.19659 0.93654 0.94254 1.01013 1.21039 0.98413 0.93618 0.90090 1.61936 1.15396 1.39471 1.08465 1.22268 0.92624 0.99711 0.96786 1.22582 0.94976 0.90400 0.99322 1.19331 0.90379 0.82870 0.90978 0.96528 1.86431 1.51043 1.45112 1.55904 1.22875 1.29348 1.17296 1.00385 0.93119 1.27286 0.99736 1.03084 0.91761 1.70748 1.35614 1.19242 1.30128 0.82942 0.74273 0.72370 0.76442 1.20052 1.19303 1.21068 1.21069 0.93209 0.98350 1.01547 0.90258 0.91502 0.90487 0.84009 0.84587 0.90618 0.91440 0.91553 0.89886 0.94251 0.93712 0.90795 0.95613 0.91023 0.95769 0.79518 0.92225 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.94 16 2 C -0.10 -2.24 5.88 -19.87 -0.12 -2.36 16 3 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 4 C -0.13 -2.98 9.70 22.27 0.22 -2.77 16 5 C -0.08 -2.20 5.88 -19.86 -0.12 -2.32 16 6 C -0.12 -3.03 9.26 71.24 0.66 -2.37 16 7 C -0.09 -2.38 4.57 -19.87 -0.09 -2.47 16 8 C 0.10 2.85 4.22 85.56 0.36 3.21 16 9 N -0.53 -19.21 3.96 -927.05 -3.67 -22.88 16 10 C 0.03 1.23 9.09 127.69 1.16 2.39 16 11 C 0.06 2.28 4.56 86.30 0.39 2.68 16 12 C 0.22 11.42 2.30 29.85 0.07 11.49 16 13 H 0.02 0.97 6.42 -2.38 -0.02 0.95 16 14 O -0.58 -30.23 11.88 -148.98 -1.77 -32.00 16 15 C -0.66 -36.95 8.76 25.60 0.22 -36.72 16 16 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 17 C -0.02 -0.96 5.40 84.65 0.46 -0.50 16 18 N -0.92 -57.65 13.53 21.45 0.29 -57.36 16 19 Si 1.12 49.97 29.90 68.60 2.05 52.02 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 C -0.12 -3.07 8.30 22.27 0.18 -2.88 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 26 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 27 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 28 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 31 H 0.07 2.07 6.35 -2.38 -0.02 2.05 16 32 H 0.08 2.39 7.07 -2.39 -0.02 2.37 16 33 H 0.04 1.12 7.98 -2.39 -0.02 1.10 16 34 H 0.04 1.84 6.47 -2.39 -0.02 1.82 16 35 H 0.07 2.42 6.43 -2.39 -0.02 2.40 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 38 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 39 H 0.36 16.85 9.04 -74.06 -0.67 16.18 16 40 H 0.27 17.35 6.47 -92.71 -0.60 16.75 16 41 H 0.12 2.77 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -66.47 331.08 1.74 -64.74 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.51 Total: 31.44 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 4.33 Total: -35.95 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -3.38 Total: -80.24 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.77 Total: -32.00 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.05 Total: 52.02 kcal Total: -66.47 1.74 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119768554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.828 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds