Wall clock time and date at job start Mon Mar 30 2020 00:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46881 * 2 1 4 4 C 1.38145 * 120.02926 * 264.99828 * 3 2 1 5 5 C 1.38260 * 120.05362 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.94529 * 179.72795 * 5 4 3 7 7 N 1.46497 * 109.47408 * 89.99634 * 6 5 4 8 8 C 1.46498 * 120.00066 * 270.00599 * 7 6 5 9 9 C 1.36939 * 120.00020 * 89.99768 * 7 6 5 10 10 H 1.08006 * 119.99514 * 22.38217 * 9 7 6 11 11 C 1.38813 * 120.00331 * 202.37445 * 9 7 6 12 12 N 1.31610 * 119.99856 * 11.33882 * 11 9 7 13 13 Si 1.86795 * 119.99845 * 191.34038 * 11 9 7 14 14 H 1.48497 * 109.47417 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47331 * 120.00026 * 13 11 9 16 16 H 1.48494 * 109.47185 * 239.99822 * 13 11 9 17 17 C 1.38272 * 120.11125 * 359.97438 * 5 4 3 18 18 C 1.38139 * 120.05905 * 0.02562 * 17 5 4 19 19 C 1.50691 * 120.03144 * 180.02562 * 18 17 5 20 20 C 1.53008 * 109.47262 * 264.97684 * 19 18 17 21 21 C 1.38730 * 120.02484 * 85.02820 * 3 2 1 22 22 O 1.35909 * 120.05594 * 359.95021 * 21 3 2 23 23 H 1.09000 * 109.46939 * 299.99562 * 1 2 3 24 24 H 1.08996 * 109.46991 * 59.99851 * 1 2 3 25 25 H 1.09000 * 109.46717 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46939 * 240.00438 * 2 1 3 27 27 H 1.08994 * 109.47563 * 120.00636 * 2 1 3 28 28 H 1.07995 * 119.97062 * 0.04920 * 4 3 2 29 29 H 1.09002 * 109.46990 * 209.99741 * 6 5 4 30 30 H 1.08994 * 109.46754 * 329.99686 * 6 5 4 31 31 H 1.08998 * 109.47339 * 94.20544 * 8 7 6 32 32 H 1.09008 * 109.46984 * 214.20159 * 8 7 6 33 33 H 1.08998 * 109.47267 * 334.19515 * 8 7 6 34 34 H 0.96998 * 119.99945 * 180.02562 * 12 11 9 35 35 H 1.08001 * 119.96864 * 180.02562 * 17 5 4 36 36 H 1.09000 * 109.47361 * 24.97612 * 19 18 17 37 37 H 1.08995 * 109.47556 * 144.97765 * 19 18 17 38 38 H 1.09000 * 109.46874 * 300.00227 * 20 19 18 39 39 H 1.09001 * 109.46756 * 60.00057 * 20 19 18 40 40 H 1.08996 * 109.46896 * 179.97438 * 20 19 18 41 41 H 0.96699 * 113.99751 * 90.00532 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3610 2.0379 -1.1915 5 6 2.8224 3.3413 -1.1920 6 6 3.1861 4.0100 -2.4926 7 7 2.0074 4.6855 -3.0408 8 6 1.1059 3.9673 -3.9450 9 6 1.7483 5.9883 -2.7079 10 1 2.5476 6.6261 -2.3604 11 6 0.4583 6.4892 -2.8172 12 7 -0.5507 5.6695 -3.0224 13 14 0.1546 8.3267 -2.6730 14 1 1.4450 9.0254 -2.4458 15 1 -0.4640 8.8261 -3.9273 16 1 -0.7587 8.5894 -1.5320 17 6 2.9555 4.0305 -0.0007 18 6 2.6281 3.4180 1.1934 19 6 2.7728 4.1699 2.4912 20 6 4.1300 3.8467 3.1194 21 6 2.1655 2.1101 1.1966 22 8 1.8424 1.5053 2.3701 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.2572 1.5019 -2.1232 29 1 3.9751 4.7413 -2.3170 30 1 3.5372 3.2598 -3.2011 31 1 0.2851 3.5355 -3.3724 32 1 0.7069 4.6600 -4.6861 33 1 1.6549 3.1722 -4.4495 34 1 -1.4521 6.0196 -3.0991 35 1 3.3157 5.0487 -0.0039 36 1 2.7068 5.2410 2.3000 37 1 1.9767 3.8731 3.1739 38 1 4.1960 2.7757 3.3106 39 1 4.9262 4.1436 2.4367 40 1 4.2348 4.3910 4.0579 41 1 2.5784 1.0364 2.7866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144148222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:57 Heat of formation + Delta-G solvation = -36.043137 kcal Electronic energy + Delta-G solvation = -20433.136571 eV Core-core repulsion = 17505.325996 eV Total energy + Delta-G solvation = -2927.810576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06918 -38.22647 -36.82317 -35.88015 -34.16087 -32.88117 -30.44741 -29.91330 -27.96606 -26.98782 -24.96383 -24.56577 -23.37303 -21.25555 -21.08232 -19.07564 -18.75125 -17.20313 -16.93296 -16.41494 -15.93593 -15.52865 -15.17237 -15.01864 -14.94914 -14.62027 -14.29073 -13.99202 -13.71749 -13.56291 -13.27939 -13.02751 -12.91046 -12.79065 -12.59610 -12.47490 -12.28875 -12.17779 -12.04579 -11.96742 -11.85571 -11.71752 -11.63395 -11.02385 -10.66372 -9.42643 -9.19736 -8.78986 -7.83561 -5.30247 0.46685 0.53260 1.43472 1.44349 1.54560 2.48545 2.78631 3.32348 3.41436 3.83940 3.85403 3.87960 4.05491 4.27748 4.38584 4.47536 4.50525 4.52383 4.57993 4.62031 4.72676 4.82423 4.85605 4.96593 5.01657 5.04457 5.06503 5.10744 5.23433 5.29176 5.31981 5.40181 5.42830 5.60514 5.65820 5.68818 5.72625 5.91926 6.11167 6.31835 6.96610 7.14188 7.85247 8.29161 9.20079 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006668 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.386387 B = 4197.976807 C = 4920.486745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 C -0.114 4.114 4 C -0.114 4.114 5 C -0.098 4.098 6 C 0.180 3.820 7 N -0.607 5.607 8 C 0.180 3.820 9 C -0.254 4.254 10 H 0.072 0.928 11 C -0.054 4.054 12 N -0.937 5.937 13 Si 0.964 3.036 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.297 1.297 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.079 4.079 20 C -0.133 4.133 21 C 0.089 3.911 22 O -0.494 6.494 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.068 0.932 31 H -0.002 1.002 32 H 0.019 0.981 33 H 0.031 0.969 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -10.365 9.573 16.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.115 4.115 4 C -0.133 4.133 5 C -0.101 4.101 6 C 0.055 3.945 7 N -0.328 5.328 8 C 0.035 3.965 9 C -0.384 4.384 10 H 0.090 0.910 11 C -0.249 4.249 12 N -0.584 5.584 13 Si 0.793 3.207 14 H -0.188 1.188 15 H -0.217 1.217 16 H -0.224 1.224 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.191 4.191 21 C 0.044 3.956 22 O -0.306 6.306 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.016 0.984 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.209 -10.080 9.398 16.041 hybrid contribution -0.418 1.068 -0.064 1.149 sum 7.791 -9.012 9.334 15.134 Atomic orbital electron populations 1.21668 0.95296 1.02091 1.00724 1.20370 0.95670 0.90977 1.03463 1.20391 1.00605 0.98026 0.92468 1.20847 1.00336 0.94711 0.97420 1.21035 0.98181 0.93974 0.96956 1.20057 0.89270 0.94921 0.90280 1.44271 1.27517 1.10082 1.50961 1.20527 0.91309 0.93226 0.91423 1.19555 0.92625 0.87095 1.39123 0.90991 1.25788 0.95481 1.01774 1.01841 1.70252 0.98465 1.34030 1.55684 0.85233 0.77930 0.80842 0.76693 1.18754 1.21664 1.22392 1.20808 1.01224 0.99065 0.91750 1.20366 0.99978 0.95044 0.96136 1.20416 0.99683 0.98672 0.92842 1.21634 0.94735 1.02171 1.00511 1.17974 1.00972 0.91194 0.85480 1.84779 1.40107 1.71361 1.34316 0.93888 0.94787 0.90296 0.90295 0.89453 0.86161 0.92468 0.91372 0.98401 0.96183 0.95044 0.94505 0.87203 0.92148 0.90938 0.91866 0.93068 0.90954 0.74488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.89 71.98 0.71 -3.08 16 2 C -0.07 -1.71 5.79 29.85 0.17 -1.53 16 3 C -0.11 -3.70 5.15 -19.77 -0.10 -3.80 16 4 C -0.11 -4.15 9.33 22.25 0.21 -3.95 16 5 C -0.10 -3.92 5.46 -19.85 -0.11 -4.03 16 6 C 0.18 7.44 5.83 85.63 0.50 7.94 16 7 N -0.61 -30.91 2.91 -731.31 -2.13 -33.03 16 8 C 0.18 9.14 9.01 127.77 1.15 10.29 16 9 C -0.25 -14.10 9.67 84.03 0.81 -13.28 16 10 H 0.07 3.87 7.84 -2.91 -0.02 3.85 16 11 C -0.05 -3.10 5.13 84.86 0.44 -2.66 16 12 N -0.94 -57.13 10.59 21.65 0.23 -56.90 16 13 Si 0.96 46.17 29.57 68.60 2.03 48.19 16 14 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 17 C -0.11 -4.24 9.33 22.25 0.21 -4.04 16 18 C -0.11 -3.90 5.15 -19.77 -0.10 -4.00 16 19 C -0.08 -2.19 5.79 29.85 0.17 -2.02 16 20 C -0.13 -2.75 9.90 71.98 0.71 -2.04 16 21 C 0.09 2.82 6.65 22.51 0.15 2.97 16 22 O -0.49 -12.72 11.78 -92.53 -1.09 -13.81 16 23 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 27 H 0.09 1.80 7.69 -2.39 -0.02 1.78 16 28 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 29 H 0.06 2.27 7.97 -2.39 -0.02 2.25 16 30 H 0.07 2.47 7.81 -2.39 -0.02 2.45 16 31 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 32 H 0.02 1.08 7.19 -2.38 -0.02 1.06 16 33 H 0.03 1.34 7.84 -2.39 -0.02 1.32 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 37 H 0.07 2.00 7.69 -2.39 -0.02 1.99 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.40 6.14 9.06 -74.06 -0.67 5.46 16 Total: -1.00 -67.90 338.13 4.29 -63.61 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.33 Total: 15.16 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.92 Total: -23.22 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -1.90 Total: -89.93 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.09 Total: -13.81 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -67.90 4.29 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144148222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.564 kcal (2) G-P(sol) polarization free energy of solvation -67.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds