Wall clock time and date at job start Mon Mar 30 2020 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36362 * 120.07852 * 2 1 4 4 C 1.39543 * 120.15732 * 180.25204 * 3 2 1 5 5 N 1.38863 * 119.84147 * 179.75910 * 4 3 2 6 6 C 1.46500 * 120.00179 * 179.72682 * 5 4 3 7 7 C 1.52998 * 109.47105 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47053 * 65.00228 * 7 6 5 9 9 C 1.42905 * 113.99549 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47469 * 89.99894 * 9 8 7 11 11 C 1.53006 * 109.46642 * 209.99787 * 9 8 7 12 12 C 1.39588 * 120.32123 * 359.48694 * 4 3 2 13 13 C 1.36325 * 120.15248 * 0.22782 * 12 4 3 14 14 C 1.40867 * 120.08408 * 179.71794 * 2 1 3 15 15 C 1.41142 * 120.15230 * 0.02562 * 14 2 1 16 16 H 1.07997 * 119.99957 * 333.63843 * 15 14 2 17 17 C 1.39858 * 119.99825 * 153.64384 * 15 14 2 18 18 N 1.30909 * 119.99920 * 343.80201 * 17 15 14 19 19 Si 1.86801 * 120.00068 * 163.80647 * 17 15 14 20 20 H 1.48492 * 109.47284 * 59.99692 * 19 17 15 21 21 H 1.48506 * 109.47035 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46649 * 299.99309 * 19 17 15 23 23 H 1.08998 * 109.47058 * 270.28089 * 1 2 3 24 24 H 1.09007 * 109.47108 * 30.28467 * 1 2 3 25 25 H 1.08996 * 109.47029 * 150.28151 * 1 2 3 26 26 H 1.07998 * 119.92073 * 0.02562 * 3 2 1 27 27 H 0.97001 * 120.00178 * 359.72533 * 5 4 3 28 28 H 1.08999 * 109.47015 * 60.00232 * 6 5 4 29 29 H 1.08998 * 109.46823 * 300.00183 * 6 5 4 30 30 H 1.08997 * 109.46947 * 184.99977 * 7 6 5 31 31 H 1.08998 * 109.46994 * 304.99707 * 7 6 5 32 32 H 1.09000 * 109.47226 * 329.99254 * 9 8 7 33 33 H 1.09000 * 109.47419 * 59.99478 * 10 9 8 34 34 H 1.09000 * 109.47574 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.47105 * 299.99883 * 10 9 8 36 36 H 1.08991 * 109.47406 * 59.99859 * 11 9 8 37 37 H 1.09000 * 109.47092 * 180.02562 * 11 9 8 38 38 H 1.09000 * 109.46875 * 299.99682 * 11 9 8 39 39 H 1.07991 * 119.92513 * 180.25371 * 12 4 3 40 40 H 1.08007 * 120.07771 * 179.97438 * 13 12 4 41 41 H 0.96999 * 119.99939 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1800 0.0000 4 6 3.5859 1.1819 -0.0053 5 7 4.2752 2.3874 -0.0103 6 6 5.7402 2.3935 -0.0099 7 6 6.2441 3.8381 -0.0154 8 8 5.8630 4.4802 1.2031 9 6 6.2867 5.8415 1.2998 10 6 5.2036 6.7551 0.7229 11 6 6.5256 6.1981 2.7685 12 6 4.2923 -0.0220 0.0001 13 6 3.6221 -1.2091 0.0060 14 6 2.2132 -1.2189 0.0060 15 6 1.5125 -2.4441 0.0115 16 1 0.5168 -2.4949 0.4266 17 6 2.1077 -3.5924 -0.5206 18 7 3.1561 -3.4862 -1.2974 19 14 1.4067 -5.2776 -0.1230 20 1 0.0001 -5.3521 -0.5929 21 1 2.2120 -6.3223 -0.8053 22 1 1.4507 -5.4981 1.3449 23 1 -0.3633 0.0050 1.0276 24 1 -0.3634 0.8875 -0.5183 25 1 -0.3633 -0.8925 -0.5094 26 1 1.6505 2.1153 0.0004 27 1 3.7867 3.2254 -0.0142 28 1 6.1059 1.8774 -0.8975 29 1 6.1053 1.8851 0.8824 30 1 7.3304 3.8436 -0.1046 31 1 5.8076 4.3720 -0.8594 32 1 7.2115 5.9750 0.7385 33 1 4.2788 6.6216 1.2842 34 1 5.5265 7.7935 0.7971 35 1 5.0334 6.5010 -0.3233 36 1 7.2972 5.5473 3.1795 37 1 6.8483 7.2365 2.8424 38 1 5.6008 6.0646 3.3297 39 1 5.3721 -0.0130 0.0001 40 1 4.1699 -2.1400 0.0098 41 1 3.5687 -4.2826 -1.6668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161794809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:27 Heat of formation + Delta-G solvation = -41.297753 kcal Electronic energy + Delta-G solvation = -19357.203437 eV Core-core repulsion = 16429.165004 eV Total energy + Delta-G solvation = -2928.038433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.67725 -37.90169 -35.30452 -33.33137 -32.54806 -30.90956 -29.64163 -27.60581 -27.33844 -25.93541 -23.92723 -22.34008 -21.45154 -20.79122 -19.02566 -17.03816 -17.00796 -16.10352 -15.62100 -14.98811 -14.82112 -14.27174 -14.00403 -13.69297 -13.14948 -13.02830 -12.68064 -12.53233 -12.43874 -12.33967 -12.21066 -11.71525 -11.62388 -11.47754 -11.12818 -11.05263 -10.96025 -10.91049 -10.70485 -10.66562 -10.36537 -9.64508 -9.49141 -9.18613 -9.12013 -8.38444 -7.25712 -6.55943 -6.27801 -3.96309 2.97674 3.13627 3.17573 3.21185 3.42110 3.59092 4.10224 4.39577 4.68579 4.83226 4.85702 4.99223 5.17422 5.27300 5.37689 5.39510 5.51412 5.61709 5.65278 5.81528 5.98425 6.02040 6.02981 6.14261 6.32457 6.35457 6.51778 6.77203 6.80175 6.99836 7.08581 7.21033 7.29668 7.43962 7.69103 7.82584 7.90536 8.21950 8.39397 8.57168 8.79234 8.88151 9.13331 9.23448 10.45014 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.036784 B = 0.003650 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.026991 B = 7668.937939 C = 8088.090838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.157 4.157 3 C -0.159 4.159 4 C 0.100 3.900 5 N -0.756 5.756 6 C 0.141 3.859 7 C 0.053 3.947 8 O -0.374 6.374 9 C 0.079 3.921 10 C -0.175 4.175 11 C -0.149 4.149 12 C -0.171 4.171 13 C -0.119 4.119 14 C 0.076 3.924 15 C -0.464 4.464 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.811 5.811 19 Si 0.902 3.098 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.267 1.267 23 H 0.041 0.959 24 H 0.035 0.965 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.386 0.614 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 14.022 2.471 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C -0.181 4.181 4 C 0.003 3.997 5 N -0.392 5.392 6 C 0.016 3.984 7 C -0.024 4.024 8 O -0.294 6.294 9 C 0.021 3.979 10 C -0.233 4.233 11 C -0.207 4.207 12 C -0.193 4.193 13 C -0.139 4.139 14 C 0.073 3.927 15 C -0.495 4.495 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.439 5.439 19 Si 0.727 3.273 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.192 1.192 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.103 0.897 27 H 0.219 0.781 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.135 0.865 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.549 13.689 2.470 15.375 hybrid contribution -0.185 -0.341 -0.189 0.432 sum 6.364 13.348 2.281 14.963 Atomic orbital electron populations 1.20413 0.93734 1.00463 0.99564 1.19310 0.94125 0.92759 1.09683 1.19645 0.91528 0.96405 1.10567 1.17354 0.90662 0.85122 1.06552 1.43762 1.03003 1.05337 1.87115 1.21024 0.83393 0.93100 1.00901 1.22816 0.98432 0.94067 0.87062 1.88044 1.78796 1.24139 1.38403 1.22058 0.96160 0.82598 0.97062 1.22301 1.00207 0.99285 1.01493 1.21851 1.02750 1.01032 0.95018 1.20073 0.97051 0.92046 1.10089 1.20906 0.94644 0.96011 1.02375 1.17332 0.91601 0.91585 0.92157 1.19314 1.01988 0.92572 1.35639 0.90829 1.25784 0.94462 1.00797 0.93011 1.69846 1.19391 1.30990 1.23651 0.86489 0.79642 0.81561 0.79617 1.19333 1.20677 1.19159 0.94053 0.94554 0.91945 0.89666 0.78130 0.92100 0.92725 0.92615 0.93116 0.92577 0.91638 0.91937 0.92507 0.92048 0.91544 0.91708 0.89526 0.86479 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.39 36.01 0.34 -1.49 16 2 C -0.16 -3.91 5.90 -104.30 -0.62 -4.53 16 3 C -0.16 -3.71 9.46 -39.77 -0.38 -4.09 16 4 C 0.10 2.28 6.67 -83.69 -0.56 1.72 16 5 N -0.76 -13.98 5.65 -58.50 -0.33 -14.31 16 6 C 0.14 2.20 5.28 -4.04 -0.02 2.17 16 7 C 0.05 0.65 5.88 37.16 0.22 0.87 16 8 O -0.37 -4.99 9.93 -35.23 -0.35 -5.34 16 9 C 0.08 0.79 3.34 -26.73 -0.09 0.70 16 10 C -0.18 -1.59 9.53 37.15 0.35 -1.24 16 11 C -0.15 -1.33 9.56 37.16 0.36 -0.97 16 12 C -0.17 -4.12 9.23 -39.77 -0.37 -4.49 16 13 C -0.12 -3.20 8.62 -39.27 -0.34 -3.54 16 14 C 0.08 2.08 5.56 -106.79 -0.59 1.49 16 15 C -0.46 -12.62 8.09 -37.87 -0.31 -12.93 16 16 H 0.07 1.93 6.88 -52.49 -0.36 1.57 16 17 C 0.07 1.93 5.15 -17.34 -0.09 1.84 16 18 N -0.81 -21.80 10.97 55.54 0.61 -21.19 16 19 Si 0.90 19.50 29.59 -169.99 -5.03 14.47 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.06 1.38 6.78 -51.93 -0.35 1.03 16 26 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.39 6.64 8.47 -40.82 -0.35 6.29 16 28 H 0.06 0.94 7.93 -51.93 -0.41 0.52 16 29 H 0.05 0.91 7.93 -51.93 -0.41 0.49 16 30 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 32 H 0.06 0.49 7.79 -51.93 -0.40 0.09 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.91 6.68 -52.49 -0.35 1.55 16 40 H 0.12 3.24 6.23 -52.48 -0.33 2.92 16 41 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 334.93 15.07 5.05 5.05 Total: -1.00 -29.12 334.93 -8.86 -37.98 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.71 Total: 7.82 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -2.09 Total: -24.48 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.28 Total: -35.51 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.35 Total: -5.34 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.12 -8.86 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161794809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.322 kcal (2) G-P(sol) polarization free energy of solvation -29.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds