Wall clock time and date at job start Mon Mar 30 2020 00:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36349 * 120.08607 * 2 1 4 4 C 1.39545 * 120.16455 * 180.02562 * 3 2 1 5 5 N 1.38859 * 119.84702 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00415 * 182.99579 * 5 4 3 7 7 C 1.53004 * 109.46768 * 298.14530 * 6 5 4 8 8 C 1.53008 * 109.47234 * 58.13909 * 6 5 4 9 9 C 1.52998 * 109.47345 * 178.14219 * 6 5 4 10 10 C 1.52997 * 109.46879 * 179.97438 * 9 6 5 11 11 O 1.42909 * 109.46861 * 180.02562 * 10 9 6 12 12 C 1.39591 * 120.31363 * 359.97438 * 4 3 2 13 13 C 1.36318 * 120.16193 * 359.96545 * 12 4 3 14 14 C 1.40873 * 120.07575 * 179.97438 * 2 1 3 15 15 C 1.41133 * 120.15743 * 359.74874 * 14 2 1 16 16 H 1.08002 * 119.99885 * 333.59201 * 15 14 2 17 17 C 1.39868 * 120.00019 * 153.59455 * 15 14 2 18 18 N 1.30904 * 119.99840 * 343.43804 * 17 15 14 19 19 Si 1.86795 * 120.00079 * 163.43805 * 17 15 14 20 20 H 1.48505 * 109.47286 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47426 * 119.99984 * 19 17 15 22 22 H 1.48501 * 109.47413 * 240.00171 * 19 17 15 23 23 H 1.08999 * 109.47161 * 270.02916 * 1 2 3 24 24 H 1.09007 * 109.46757 * 30.02290 * 1 2 3 25 25 H 1.08992 * 109.47038 * 150.02426 * 1 2 3 26 26 H 1.08008 * 119.91871 * 359.97305 * 3 2 1 27 27 H 0.97002 * 119.99309 * 2.99229 * 5 4 3 28 28 H 1.09001 * 109.47389 * 49.59932 * 7 6 5 29 29 H 1.09003 * 109.46903 * 169.60340 * 7 6 5 30 30 H 1.09005 * 109.46800 * 289.59640 * 7 6 5 31 31 H 1.08996 * 109.46562 * 68.59521 * 8 6 5 32 32 H 1.09000 * 109.47186 * 188.59207 * 8 6 5 33 33 H 1.08997 * 109.46848 * 308.59595 * 8 6 5 34 34 H 1.08996 * 109.47259 * 299.99823 * 9 6 5 35 35 H 1.09005 * 109.46631 * 60.00115 * 9 6 5 36 36 H 1.09001 * 109.47184 * 299.99603 * 10 9 6 37 37 H 1.08996 * 109.47412 * 60.00707 * 10 9 6 38 38 H 0.96695 * 113.99742 * 180.02562 * 11 10 9 39 39 H 1.07999 * 119.92181 * 179.97438 * 12 4 3 40 40 H 1.08002 * 120.08560 * 180.02562 * 13 12 4 41 41 H 0.97004 * 119.99820 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.1798 0.0000 4 6 3.5860 1.1817 -0.0005 5 7 4.2754 2.3871 -0.0011 6 6 5.7388 2.3939 -0.0679 7 6 6.3088 1.6834 1.1614 8 6 6.1950 1.6666 -1.3345 9 6 6.2412 3.8387 -0.1006 10 6 7.7695 3.8458 -0.1698 11 8 8.2388 5.1953 -0.1996 12 6 4.2922 -0.0224 -0.0005 13 6 3.6221 -1.2095 0.0007 14 6 2.2130 -1.2191 0.0005 15 6 1.5123 -2.4442 0.0064 16 1 0.5186 -2.4959 0.4264 17 6 2.1049 -3.5913 -0.5315 18 7 3.1450 -3.4828 -1.3188 19 14 1.4120 -5.2780 -0.1263 20 1 0.2440 -5.1291 0.7787 21 1 0.9854 -5.9520 -1.3789 22 1 2.4559 -6.0941 0.5441 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8899 -0.5142 25 1 -0.3633 -0.8901 -0.5134 26 1 1.6506 2.1152 -0.0004 27 1 3.7879 3.2245 0.0428 28 1 5.8117 0.7216 1.2882 29 1 7.3786 1.5244 1.0257 30 1 6.1422 2.2980 2.0461 31 1 5.9194 2.2544 -2.2100 32 1 7.2770 1.5373 -1.3095 33 1 5.7134 0.6902 -1.3861 34 1 5.8351 4.3449 -0.9763 35 1 5.9162 4.3567 0.8018 36 1 8.1753 3.3398 0.7063 37 1 8.0949 3.3277 -1.0719 38 1 9.2013 5.2761 -0.2441 39 1 5.3722 -0.0135 -0.0014 40 1 4.1697 -2.1404 0.0011 41 1 3.5561 -4.2784 -1.6916 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167741251.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:19 Heat of formation + Delta-G solvation = -28.892952 kcal Electronic energy + Delta-G solvation = -20108.486233 eV Core-core repulsion = 17180.985712 eV Total energy + Delta-G solvation = -2927.500521 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.17886 -37.45286 -36.20207 -33.58864 -32.09507 -30.83669 -28.81381 -28.25916 -26.98063 -25.81491 -24.63982 -22.98380 -20.78830 -19.86283 -18.66728 -17.55736 -17.10364 -15.95353 -15.44043 -15.15588 -14.81924 -14.13735 -13.71036 -13.62999 -13.24574 -13.06685 -12.66218 -12.43324 -12.12950 -12.08444 -11.73281 -11.47048 -11.40016 -11.18389 -11.09630 -11.03836 -10.98594 -10.72129 -10.58710 -10.37244 -10.24296 -9.96575 -9.50988 -9.17171 -9.04265 -8.43133 -7.27734 -6.60553 -6.31654 -4.00083 2.91284 3.08341 3.16489 3.21691 3.37349 3.90804 4.07432 4.44594 4.77609 4.93568 5.12968 5.16114 5.38411 5.42571 5.52956 5.77362 5.91214 5.93642 6.03211 6.07549 6.16413 6.22218 6.28062 6.32850 6.48610 6.64362 6.70902 6.74525 6.79263 6.98836 7.07385 7.26021 7.39931 7.46372 7.65881 7.78165 7.85416 8.18106 8.35625 8.53762 8.74444 8.83828 9.09726 9.19438 10.40804 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.004581 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.815466 B = 6111.315541 C = 6720.722201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.157 4.157 3 C -0.160 4.160 4 C 0.103 3.897 5 N -0.752 5.752 6 C 0.195 3.805 7 C -0.180 4.180 8 C -0.180 4.180 9 C -0.117 4.117 10 C 0.077 3.923 11 O -0.578 6.578 12 C -0.181 4.181 13 C -0.123 4.123 14 C 0.077 3.923 15 C -0.463 4.463 16 H 0.074 0.926 17 C 0.075 3.925 18 N -0.810 5.810 19 Si 0.900 3.100 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.275 1.275 23 H 0.040 0.960 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.383 0.617 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.377 0.623 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 8.710 1.619 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.159 4.159 3 C -0.182 4.182 4 C 0.007 3.993 5 N -0.387 5.387 6 C 0.107 3.893 7 C -0.238 4.238 8 C -0.238 4.238 9 C -0.155 4.155 10 C -0.001 4.001 11 O -0.383 6.383 12 C -0.202 4.202 13 C -0.143 4.143 14 C 0.074 3.926 15 C -0.495 4.495 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.437 5.437 19 Si 0.725 3.275 20 H -0.187 1.187 21 H -0.203 1.203 22 H -0.201 1.201 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.216 0.784 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.224 0.776 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.406 8.592 1.494 11.441 hybrid contribution 0.223 -0.639 0.025 0.677 sum 7.629 7.953 1.519 11.124 Atomic orbital electron populations 1.20413 0.93771 1.00455 0.99555 1.19301 0.94111 0.92763 1.09769 1.19665 0.91598 0.96405 1.10522 1.17265 0.90437 0.85137 1.06508 1.43977 1.02726 1.05326 1.86668 1.19711 0.82269 0.92804 0.94519 1.22652 1.00050 1.03326 0.97782 1.22620 1.00237 1.03590 0.97345 1.21674 0.94084 0.96624 1.03132 1.22266 0.94959 0.82685 1.00192 1.86460 1.26780 1.27469 1.97633 1.20531 0.97963 0.91906 1.09827 1.20939 0.94654 0.96096 1.02570 1.17353 0.91662 0.91567 0.91985 1.19385 1.02200 0.92608 1.35270 0.90776 1.25778 0.94422 1.00805 0.92998 1.69861 1.19705 1.30862 1.23308 0.86408 0.79861 0.82214 0.79023 1.18671 1.20345 1.20061 0.94083 0.94566 0.91961 0.89698 0.78439 0.89522 0.92930 0.92991 0.92935 0.92963 0.89332 0.91091 0.91148 0.93202 0.93141 0.77628 0.87405 0.86607 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.39 36.01 0.34 -1.46 16 2 C -0.16 -3.82 5.90 -104.30 -0.62 -4.43 16 3 C -0.16 -3.58 9.46 -39.77 -0.38 -3.95 16 4 C 0.10 2.21 6.24 -83.69 -0.52 1.68 16 5 N -0.75 -13.03 5.23 -45.85 -0.24 -13.27 16 6 C 0.20 2.87 0.83 -131.82 -0.11 2.76 16 7 C -0.18 -2.61 7.59 37.16 0.28 -2.33 16 8 C -0.18 -2.72 7.62 37.16 0.28 -2.44 16 9 C -0.12 -1.49 4.72 -26.73 -0.13 -1.61 16 10 C 0.08 0.83 6.36 37.16 0.24 1.07 16 11 O -0.58 -6.22 13.66 -35.23 -0.48 -6.70 16 12 C -0.18 -4.08 6.39 -39.77 -0.25 -4.33 16 13 C -0.12 -3.15 8.63 -39.26 -0.34 -3.49 16 14 C 0.08 2.05 5.55 -106.79 -0.59 1.45 16 15 C -0.46 -12.36 8.08 -37.87 -0.31 -12.66 16 16 H 0.07 1.92 6.90 -52.49 -0.36 1.56 16 17 C 0.07 1.91 5.14 -17.34 -0.09 1.82 16 18 N -0.81 -21.31 11.01 55.54 0.61 -20.70 16 19 Si 0.90 19.18 29.59 -169.99 -5.03 14.15 16 20 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 25 H 0.06 1.35 6.79 -51.93 -0.35 1.00 16 26 H 0.08 1.72 8.06 -52.48 -0.42 1.29 16 27 H 0.38 6.08 8.47 -40.82 -0.35 5.73 16 28 H 0.09 1.48 4.73 -51.93 -0.25 1.24 16 29 H 0.05 0.64 6.92 -51.93 -0.36 0.28 16 30 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 32 H 0.05 0.66 6.82 -51.93 -0.35 0.31 16 33 H 0.09 1.61 4.70 -51.93 -0.24 1.36 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.50 6.67 -51.93 -0.35 0.15 16 37 H 0.05 0.51 6.63 -51.93 -0.34 0.17 16 38 H 0.38 2.21 9.12 45.56 0.42 2.62 16 39 H 0.11 2.19 3.65 -52.49 -0.19 2.00 16 40 H 0.12 3.10 6.25 -52.49 -0.33 2.77 16 41 H 0.27 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 315.49 15.07 4.75 4.75 Total: -1.00 -28.88 315.49 -7.72 -36.60 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.15 Total: 13.08 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -2.19 Total: -27.92 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.37 Total: -33.97 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.48 Total: -6.70 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.88 -7.72 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167741251.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.709 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds