Wall clock time and date at job start Mon Mar 30 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36359 * 119.92055 * 2 1 4 4 C 1.40867 * 119.83665 * 180.29552 * 3 2 1 5 5 C 1.41137 * 120.15238 * 179.73752 * 4 3 2 6 6 H 1.08000 * 120.00134 * 323.47532 * 5 4 3 7 7 C 1.39867 * 119.99507 * 143.47929 * 5 4 3 8 8 N 1.30893 * 120.00243 * 342.59276 * 7 5 4 9 9 Si 1.86806 * 119.99584 * 162.59490 * 7 5 4 10 10 H 1.48500 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47008 * 119.99915 * 9 7 5 12 12 H 1.48495 * 109.47045 * 239.99629 * 9 7 5 13 13 C 1.40895 * 119.68831 * 359.71661 * 4 3 2 14 14 C 1.36329 * 119.83654 * 359.97438 * 13 4 3 15 15 C 1.39548 * 119.91723 * 179.75327 * 2 1 3 16 16 N 1.38855 * 119.84250 * 0.02562 * 15 2 1 17 17 C 1.46500 * 119.99762 * 180.36835 * 16 15 2 18 18 C 1.52999 * 109.47579 * 59.36015 * 17 16 15 19 19 C 1.53001 * 109.47176 * 299.35867 * 17 16 15 20 20 C 1.53003 * 109.47026 * 179.35518 * 17 16 15 21 21 C 1.52999 * 109.47094 * 179.97438 * 20 17 16 22 22 O 1.42905 * 109.46969 * 180.02562 * 21 20 17 23 23 H 1.09004 * 109.47051 * 270.24207 * 1 2 3 24 24 H 1.09004 * 109.47433 * 30.24022 * 1 2 3 25 25 H 1.08993 * 109.47271 * 150.24383 * 1 2 3 26 26 H 1.08005 * 120.07665 * 0.02562 * 3 2 1 27 27 H 0.97006 * 120.00399 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.08172 * 179.97438 * 13 4 3 29 29 H 1.07999 * 119.91683 * 180.02562 * 14 13 4 30 30 H 0.96999 * 120.00614 * 0.36097 * 16 15 2 31 31 H 1.09012 * 109.46687 * 310.35211 * 18 17 16 32 32 H 1.09001 * 109.47343 * 70.34797 * 18 17 16 33 33 H 1.08997 * 109.47659 * 190.35501 * 18 17 16 34 34 H 1.08996 * 109.46981 * 171.64822 * 19 17 16 35 35 H 1.09007 * 109.46530 * 291.64136 * 19 17 16 36 36 H 1.08998 * 109.47129 * 51.64168 * 19 17 16 37 37 H 1.08993 * 109.47401 * 300.00263 * 20 17 16 38 38 H 1.09008 * 109.46682 * 60.00209 * 20 17 16 39 39 H 1.08993 * 109.47659 * 300.00653 * 21 20 17 40 40 H 1.09008 * 109.46739 * 60.00791 * 21 20 17 41 41 H 0.96704 * 113.99648 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1819 0.0000 4 6 3.5958 1.1798 -0.0063 5 6 4.3065 2.3992 -0.0119 6 1 3.9266 3.2431 -0.5686 7 6 5.5029 2.5145 0.7034 8 7 5.7948 1.6431 1.6355 9 14 6.6841 3.9122 0.3284 10 1 6.1257 4.7537 -0.7604 11 1 6.8741 4.7401 1.5466 12 1 7.9919 3.3538 -0.0994 13 6 4.2919 -0.0452 -0.0065 14 6 3.5988 -1.2192 -0.0001 15 6 2.2030 -1.2095 0.0052 16 7 1.5037 -2.4091 0.0098 17 6 2.2309 -3.6808 0.0235 18 6 3.1149 -3.7496 1.2703 19 6 3.1054 -3.7817 -1.2279 20 6 1.2318 -4.8394 0.0422 21 6 1.9912 -6.1676 0.0558 22 8 1.0580 -7.2497 0.0728 23 1 -0.3633 0.0043 1.0277 24 1 -0.3634 0.8878 -0.5176 25 1 -0.3633 -0.8921 -0.5100 26 1 1.6471 2.1172 0.0004 27 1 6.6243 1.7233 2.1319 28 1 5.3718 -0.0542 -0.0117 29 1 4.1310 -2.1589 0.0002 30 1 0.5337 -2.4052 0.0042 31 1 3.6977 -2.8322 1.3535 32 1 2.4877 -3.8630 2.1546 33 1 3.7890 -4.6024 1.1913 34 1 3.7554 -4.6529 -1.1476 35 1 2.4701 -3.8822 -2.1080 36 1 3.7136 -2.8818 -1.3196 37 1 0.6087 -4.7676 0.9337 38 1 0.6020 -4.7905 -0.8461 39 1 2.6140 -6.2392 -0.8358 40 1 2.6212 -6.2167 0.9441 41 1 1.4703 -8.1244 0.0825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167742301.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:50 Heat of formation + Delta-G solvation = -47.828339 kcal Electronic energy + Delta-G solvation = -20180.630632 eV Core-core repulsion = 17252.309012 eV Total energy + Delta-G solvation = -2928.321621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76566 -38.75638 -37.22229 -35.55597 -33.48256 -32.81198 -30.39061 -29.53080 -28.17490 -27.51449 -26.42828 -24.16548 -22.48844 -21.69644 -20.16328 -18.69467 -18.48607 -17.66647 -16.86566 -16.43531 -16.32043 -15.81390 -15.02872 -14.94560 -14.80879 -14.38057 -14.31736 -13.83179 -13.73303 -13.42051 -13.31385 -13.21671 -12.85364 -12.82250 -12.63337 -12.52427 -12.37690 -12.27345 -11.96157 -11.90782 -11.67438 -11.37524 -10.97913 -10.80551 -10.76390 -10.26383 -9.15664 -8.50089 -7.97276 -6.02368 1.14180 1.17006 1.39683 1.53751 1.55745 2.30228 2.73154 2.87878 3.42300 3.77416 3.96411 4.07489 4.14384 4.36983 4.37551 4.43809 4.46946 4.59200 4.69319 4.79368 4.79873 4.91986 4.95134 4.98860 5.03107 5.05086 5.10223 5.13755 5.17031 5.36699 5.47379 5.50257 5.56486 5.74159 5.89614 5.99707 6.24073 6.44427 6.71815 6.90516 6.94182 7.13038 7.18181 7.34704 8.57114 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030816 B = 0.004652 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.411634 B = 6017.045658 C = 6627.546474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.150 4.150 3 C -0.186 4.186 4 C 0.042 3.958 5 C -0.519 4.519 6 H 0.062 0.938 7 C 0.037 3.963 8 N -0.853 5.853 9 Si 0.969 3.031 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.267 1.267 13 C -0.138 4.138 14 C -0.179 4.179 15 C 0.132 3.868 16 N -0.742 5.742 17 C 0.191 3.809 18 C -0.178 4.178 19 C -0.177 4.177 20 C -0.110 4.110 21 C 0.080 3.920 22 O -0.595 6.595 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.279 0.721 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.394 0.606 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 -14.525 -2.507 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C -0.206 4.206 4 C 0.039 3.961 5 C -0.552 4.552 6 H 0.080 0.920 7 C -0.174 4.174 8 N -0.482 5.482 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.196 1.196 12 H -0.192 1.192 13 C -0.158 4.158 14 C -0.200 4.200 15 C 0.032 3.968 16 N -0.377 5.377 17 C 0.104 3.896 18 C -0.236 4.236 19 C -0.235 4.235 20 C -0.148 4.148 21 C 0.002 3.998 22 O -0.404 6.404 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.230 0.770 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.376 -14.224 -2.342 15.385 hybrid contribution 0.896 0.659 0.120 1.119 sum -4.480 -13.565 -2.222 14.457 Atomic orbital electron populations 1.20491 0.90575 1.02061 1.01437 1.19145 0.96132 0.91676 1.08512 1.20736 0.93962 0.96104 1.09788 1.17727 0.91815 0.93566 0.92972 1.19470 1.07182 0.98532 1.29977 0.91968 1.26456 0.98980 0.99345 0.92623 1.69914 1.23860 1.36961 1.17474 0.85363 0.78110 0.78392 0.78969 1.18628 1.19554 1.19227 1.20668 0.97703 0.92654 1.04733 1.20732 0.92809 0.97767 1.08723 1.17188 0.90597 0.85669 1.03305 1.44184 1.07017 1.01251 1.85247 1.19924 0.91811 0.83294 0.94598 1.22588 1.00486 1.02841 0.97732 1.22586 1.00512 1.02864 0.97558 1.21564 0.97787 0.92434 1.03053 1.22197 0.90810 0.85622 1.01203 1.86399 1.37731 1.18436 1.97812 0.92065 0.92100 0.91251 0.89131 0.91121 0.90189 0.85001 0.76977 0.92663 0.92760 0.90113 0.90115 0.92378 0.92433 0.91388 0.91087 0.92018 0.92293 0.75147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.90 9.56 71.24 0.68 -2.22 16 2 C -0.15 -6.50 5.86 -19.99 -0.12 -6.62 16 3 C -0.19 -9.43 9.37 22.47 0.21 -9.22 16 4 C 0.04 2.36 5.41 -21.27 -0.12 2.24 16 5 C -0.52 -29.96 8.97 23.38 0.21 -29.75 16 6 H 0.06 3.53 7.90 -2.91 -0.02 3.51 16 7 C 0.04 1.98 5.07 85.23 0.43 2.42 16 8 N -0.85 -48.03 11.80 21.82 0.26 -47.77 16 9 Si 0.97 41.47 29.59 68.60 2.03 43.50 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 C -0.14 -7.37 8.61 22.48 0.19 -7.18 16 14 C -0.18 -8.07 6.39 22.15 0.14 -7.93 16 15 C 0.13 5.44 6.23 38.67 0.24 5.68 16 16 N -0.74 -23.50 5.13 -299.00 -1.53 -25.04 16 17 C 0.19 4.99 0.83 3.60 0.00 4.99 16 18 C -0.18 -4.88 7.57 71.98 0.55 -4.34 16 19 C -0.18 -4.56 7.65 71.98 0.55 -4.01 16 20 C -0.11 -2.37 4.72 30.59 0.14 -2.22 16 21 C 0.08 1.37 6.36 71.98 0.46 1.83 16 22 O -0.60 -10.44 13.66 -148.98 -2.04 -12.47 16 23 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.06 1.89 8.08 -2.38 -0.02 1.88 16 25 H 0.07 1.91 6.52 -2.39 -0.02 1.90 16 26 H 0.09 4.46 8.06 -2.91 -0.02 4.44 16 27 H 0.28 14.34 8.30 -92.70 -0.77 13.57 16 28 H 0.08 4.52 7.06 -2.91 -0.02 4.50 16 29 H 0.13 5.27 3.64 -2.91 -0.01 5.26 16 30 H 0.39 11.12 6.42 -92.71 -0.60 10.53 16 31 H 0.05 1.91 4.69 -2.38 -0.01 1.90 16 32 H 0.05 1.46 8.11 -2.39 -0.02 1.44 16 33 H 0.08 1.74 6.92 -2.39 -0.02 1.72 16 34 H 0.08 1.63 6.81 -2.39 -0.02 1.61 16 35 H 0.06 1.43 8.13 -2.38 -0.02 1.42 16 36 H 0.06 1.84 4.72 -2.39 -0.01 1.83 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.06 0.93 6.62 -2.39 -0.02 0.91 16 40 H 0.06 0.92 6.67 -2.38 -0.02 0.91 16 41 H 0.40 3.11 9.12 -74.05 -0.68 2.43 16 Total: -1.00 -66.53 316.31 2.08 -64.45 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.22 Total: 33.66 kcal Atomic # 6 Polarization: -59.90 SS G_CDS: 3.58 Total: -56.32 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.28 Total: -72.81 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -2.04 Total: -12.47 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -66.53 2.08 -64.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167742301.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.625 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds