Wall clock time and date at job start Mon Mar 30 2020 00:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46913 * 2 1 4 4 O 1.42902 * 109.46901 * 120.00241 * 2 1 3 5 5 C 1.50693 * 109.47191 * 240.00114 * 2 1 3 6 6 C 1.38128 * 120.04060 * 241.09755 * 5 2 1 7 7 C 1.38261 * 120.07701 * 179.97438 * 6 5 2 8 8 C 1.38309 * 120.15306 * 0.04286 * 7 6 5 9 9 C 1.38082 * 120.06964 * 359.97438 * 8 7 6 10 10 C 1.38889 * 120.03920 * 60.81944 * 5 2 1 11 11 N 1.39672 * 120.07379 * 0.02562 * 10 5 2 12 12 C 1.46499 * 120.00194 * 175.87440 * 11 10 5 13 13 C 1.52996 * 109.47299 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.47214 * 179.97438 * 13 12 11 15 15 C 1.50707 * 109.47071 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00050 * 359.97438 * 15 14 13 17 17 C 1.37870 * 119.99815 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00200 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00155 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47531 * 89.99841 * 19 17 15 21 21 H 1.48507 * 109.47168 * 210.00081 * 19 17 15 22 22 H 1.48500 * 109.47149 * 329.99900 * 19 17 15 23 23 H 1.08998 * 109.47339 * 307.62205 * 1 2 3 24 24 H 1.09003 * 109.47186 * 67.62738 * 1 2 3 25 25 H 1.09005 * 109.46872 * 187.62320 * 1 2 3 26 26 H 1.09002 * 109.47399 * 185.27641 * 3 2 1 27 27 H 1.08995 * 109.47777 * 305.28335 * 3 2 1 28 28 H 1.09011 * 109.47343 * 65.28201 * 3 2 1 29 29 H 0.96695 * 114.00028 * 59.99902 * 4 2 1 30 30 H 1.07999 * 119.95717 * 359.97438 * 6 5 2 31 31 H 1.08009 * 119.92180 * 180.02562 * 7 6 5 32 32 H 1.07996 * 119.96409 * 179.97438 * 8 7 6 33 33 H 1.08001 * 120.03384 * 180.02562 * 9 8 7 34 34 H 0.97004 * 120.00095 * 355.86998 * 11 10 5 35 35 H 1.09005 * 109.47117 * 299.99546 * 12 11 10 36 36 H 1.09002 * 109.47792 * 59.99469 * 12 11 10 37 37 H 1.08998 * 109.47236 * 299.99445 * 13 12 11 38 38 H 1.09003 * 109.47516 * 59.99734 * 13 12 11 39 39 H 1.08999 * 109.47335 * 300.00140 * 14 13 12 40 40 H 1.09002 * 109.46803 * 60.00187 * 14 13 12 41 41 H 0.96998 * 120.00862 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0324 -0.7103 -1.2304 6 6 2.8077 -1.8465 -1.1048 7 6 3.2686 -2.4992 -2.2332 8 6 2.9560 -2.0167 -3.4912 9 6 2.1816 -0.8812 -3.6239 10 6 1.7114 -0.2267 -2.4922 11 7 0.9232 0.9189 -2.6230 12 6 0.6606 1.4798 -3.9507 13 6 -0.2220 2.7220 -3.8141 14 6 -0.4957 3.3081 -5.2007 15 6 -1.3656 4.5314 -5.0662 16 1 -1.6911 4.8578 -4.0896 17 6 -1.7469 5.2331 -6.1901 18 7 -2.5064 6.3002 -6.0729 19 14 -1.1857 4.6671 -7.8796 20 1 -2.1804 3.7169 -8.4391 21 1 -1.0627 5.8420 -8.7796 22 1 0.1321 3.9926 -7.7632 23 1 -0.3634 0.6273 0.8139 24 1 -0.3634 0.3912 -0.9503 25 1 -0.3633 -1.0186 0.1363 26 1 3.1259 1.4440 -0.0945 27 1 1.6015 1.9829 -0.8388 28 1 1.7559 1.9283 0.9336 29 1 1.7210 -1.5952 1.2329 30 1 3.0542 -2.2255 -0.1240 31 1 3.8744 -3.3877 -2.1321 32 1 3.3179 -2.5287 -4.3705 33 1 1.9375 -0.5053 -4.6065 34 1 0.5496 1.3432 -1.8347 35 1 1.6043 1.7542 -4.4223 36 1 0.1502 0.7375 -4.5643 37 1 -1.1656 2.4473 -3.3428 38 1 0.2881 3.4646 -3.2004 39 1 0.4480 3.5829 -5.6718 40 1 -1.0057 2.5657 -5.8147 41 1 -2.7744 6.7942 -6.8635 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428671.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:55 Heat of formation + Delta-G solvation = -30.281257 kcal Electronic energy + Delta-G solvation = -19825.064338 eV Core-core repulsion = 16897.503616 eV Total energy + Delta-G solvation = -2927.560722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.37092 -37.37776 -36.27118 -33.89988 -32.63117 -31.53525 -30.06378 -29.03310 -27.46890 -26.60019 -23.40647 -22.90471 -21.25999 -20.86319 -19.94291 -17.78688 -16.99257 -16.67909 -15.80767 -15.36651 -15.04185 -14.50343 -14.36686 -14.13256 -13.92790 -13.82079 -13.37190 -12.74428 -12.69281 -12.34830 -12.18987 -12.05209 -12.00414 -11.90712 -11.61693 -11.29565 -11.07163 -10.98569 -10.72708 -10.20378 -10.16768 -9.97913 -9.77043 -9.71422 -9.27397 -8.77830 -8.59697 -7.28680 -6.09908 -4.08952 1.40880 1.66998 3.26713 3.34606 3.37225 3.56530 3.85715 4.08083 4.39988 4.55587 4.78161 4.91175 4.99023 5.09238 5.23792 5.36885 5.42331 5.45049 5.49861 5.56533 5.63456 5.74237 5.76508 5.78943 5.91604 5.96270 6.06679 6.11513 6.35058 6.38079 6.39764 6.52223 6.65222 6.71490 6.92576 7.16395 7.30466 7.39459 7.49906 7.71851 7.81195 8.46625 8.93971 9.51941 11.03432 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.004190 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.649134 B = 6680.620493 C = 7530.562768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.179 3.821 3 C -0.146 4.146 4 O -0.555 6.555 5 C -0.197 4.197 6 C -0.067 4.067 7 C -0.187 4.187 8 C -0.072 4.072 9 C -0.198 4.198 10 C 0.234 3.766 11 N -0.747 5.747 12 C 0.114 3.886 13 C -0.114 4.114 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.374 0.626 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.401 0.599 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.013 0.987 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.817 -17.095 10.008 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.138 3.862 3 C -0.203 4.203 4 O -0.361 6.361 5 C -0.202 4.202 6 C -0.086 4.086 7 C -0.207 4.207 8 C -0.091 4.091 9 C -0.221 4.221 10 C 0.128 3.872 11 N -0.380 5.380 12 C -0.010 4.010 13 C -0.152 4.152 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 H 0.087 0.913 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.222 0.778 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.243 0.757 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.943 -16.254 9.812 21.432 hybrid contribution -0.223 -0.579 -0.925 1.114 sum 9.720 -16.834 8.887 21.374 Atomic orbital electron populations 1.22702 0.95463 1.03035 1.03369 1.19820 0.92061 0.92205 0.82134 1.21943 1.02506 0.93143 1.02758 1.86545 1.77213 1.28883 1.43456 1.19917 1.06705 1.00350 0.93263 1.20652 0.95515 0.93830 0.98575 1.20795 1.05350 1.02128 0.92473 1.20892 0.96015 0.94951 0.97239 1.20702 1.05098 0.98919 0.97378 1.17622 0.89921 0.86848 0.92777 1.45718 1.54908 1.28011 1.09404 1.21662 0.99496 0.96127 0.83668 1.21676 0.98059 0.94298 1.01127 1.19495 0.96965 0.96401 0.91893 1.21093 1.30529 1.09253 0.95228 0.91037 1.25027 0.94534 0.94657 0.99225 1.69907 1.36246 1.18111 1.29844 0.86771 0.79827 0.78369 0.84268 1.20254 1.21328 1.18992 0.91345 0.90699 0.91938 0.91622 0.90422 0.91480 0.77825 0.86094 0.86765 0.86478 0.85910 0.75670 0.92429 0.92495 0.92238 0.92179 0.96363 0.96829 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 8.50 37.16 0.32 -1.65 16 2 C 0.18 2.00 1.13 -91.78 -0.10 1.90 16 3 C -0.15 -1.70 8.51 37.15 0.32 -1.38 16 4 O -0.55 -5.88 12.02 -35.23 -0.42 -6.30 16 5 C -0.20 -2.42 4.79 -104.43 -0.50 -2.92 16 6 C -0.07 -0.75 9.22 -39.61 -0.37 -1.11 16 7 C -0.19 -2.04 10.04 -39.55 -0.40 -2.44 16 8 C -0.07 -0.83 10.04 -39.61 -0.40 -1.23 16 9 C -0.20 -2.59 9.32 -39.38 -0.37 -2.96 16 10 C 0.23 3.14 6.25 -83.79 -0.52 2.62 16 11 N -0.75 -10.21 4.27 -58.63 -0.25 -10.46 16 12 C 0.11 1.74 4.93 -4.04 -0.02 1.72 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 15 C -0.52 -14.59 9.66 -34.44 -0.33 -14.93 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 19 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 24 H 0.07 0.85 5.17 -51.93 -0.27 0.58 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.92 5.21 -51.93 -0.27 0.65 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.37 2.69 8.03 45.56 0.37 3.05 16 30 H 0.12 1.10 6.57 -52.49 -0.34 0.76 16 31 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.57 6.74 -52.49 -0.35 1.21 16 34 H 0.40 5.18 3.28 -40.82 -0.13 5.05 16 35 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.06 0.86 7.80 -51.93 -0.41 0.45 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 40 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -30.82 322.54 -8.00 -38.82 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.57 Total: 6.29 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.73 Total: -23.11 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.52 Total: -37.23 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.42 Total: -6.30 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.82 -8.00 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428671.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.537 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds