Wall clock time and date at job start Sun Mar 29 2020 23:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99838 * 2 1 4 4 H 1.48502 * 109.46727 * 274.87881 * 3 2 1 5 5 H 1.48493 * 109.47022 * 34.87781 * 3 2 1 6 6 H 1.48496 * 109.47104 * 154.88019 * 3 2 1 7 7 C 1.37875 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99868 * 355.19331 * 7 2 1 9 9 C 1.50704 * 119.99972 * 175.19323 * 7 2 1 10 10 N 1.46902 * 110.01891 * 65.53830 * 9 7 2 11 11 C 1.46902 * 111.00048 * 65.19998 * 10 9 7 12 12 C 1.53303 * 109.50163 * 149.57383 * 11 10 9 13 13 C 1.53787 * 108.58637 * 170.91638 * 12 11 10 14 14 H 1.08998 * 112.21210 * 170.45290 * 13 12 11 15 15 C 1.51852 * 107.95195 * 46.17350 * 13 12 11 16 16 C 1.31560 * 107.66609 * 270.77702 * 15 13 12 17 17 C 1.51853 * 107.67276 * 359.60606 * 16 15 13 18 18 H 1.08997 * 112.95731 * 214.33095 * 17 16 15 19 19 C 1.53297 * 109.50646 * 269.37123 * 11 10 9 20 20 O 1.44913 * 104.01480 * 336.41613 * 17 16 15 21 21 C 1.54265 * 110.03040 * 186.92831 * 9 7 2 22 22 C 1.54971 * 104.16240 * 95.75508 * 21 9 7 23 23 C 1.54889 * 102.77572 * 37.88434 * 22 21 9 24 24 C 1.53873 * 110.03265 * 304.14444 * 9 7 2 25 25 H 0.96993 * 120.00376 * 359.97438 * 1 2 3 26 26 H 1.00900 * 110.99720 * 189.15751 * 10 9 7 27 27 H 1.09001 * 109.50342 * 29.49920 * 11 10 9 28 28 H 1.09003 * 109.61264 * 51.19419 * 12 11 10 29 29 H 1.08995 * 109.76613 * 290.73611 * 12 11 10 30 30 H 1.07996 * 126.16534 * 90.50449 * 15 13 12 31 31 H 1.07998 * 126.16042 * 179.73775 * 16 15 13 32 32 H 1.08993 * 109.61647 * 308.81775 * 19 11 10 33 33 H 1.09003 * 109.61552 * 69.17432 * 19 11 10 34 34 H 1.09005 * 110.48932 * 214.39681 * 21 9 7 35 35 H 1.09003 * 110.48751 * 337.04557 * 21 9 7 36 36 H 1.09001 * 110.71458 * 279.57327 * 22 21 9 37 37 H 1.08993 * 110.92678 * 156.29657 * 22 21 9 38 38 H 1.08991 * 110.48660 * 203.40722 * 23 22 21 39 39 H 1.09005 * 110.59794 * 80.81846 * 23 22 21 40 40 H 1.09006 * 110.03099 * 359.95157 * 24 9 7 41 41 H 1.09001 * 110.03371 * 121.33386 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3934 2.1060 -1.3950 5 1 1.5019 2.6207 0.8006 6 1 3.5944 1.4127 0.5943 7 6 2.0045 -1.1940 0.0005 8 1 1.4674 -2.1276 0.0793 9 6 3.5076 -1.1963 -0.1088 10 7 4.0994 -0.5728 1.0824 11 6 3.8245 -1.3698 2.2854 12 6 4.9734 -1.1991 3.2860 13 6 4.5642 -1.8501 4.6178 14 1 5.3962 -1.9112 5.3194 15 6 3.9692 -3.2127 4.3094 16 6 2.6782 -3.0501 4.1157 17 6 2.3669 -1.5750 4.2981 18 1 1.3865 -1.3989 4.7406 19 6 2.5179 -0.8916 2.9287 20 8 3.4448 -1.0900 5.1365 21 6 4.0242 -2.6419 -0.2605 22 6 4.1847 -2.8287 -1.7905 23 6 4.7134 -1.4474 -2.2505 24 6 3.9452 -0.4370 -1.3736 25 1 -0.4850 0.8399 0.0004 26 1 5.0911 -0.4309 0.9613 27 1 3.7331 -2.4211 2.0123 28 1 5.1680 -0.1380 3.4420 29 1 5.8713 -1.6834 2.9025 30 1 4.5093 -4.1463 4.2542 31 1 1.9674 -3.8261 3.8730 32 1 2.5495 0.1898 3.0609 33 1 1.6763 -1.1577 2.2891 34 1 4.9852 -2.7582 0.2407 35 1 3.2974 -3.3504 0.1369 36 1 3.2235 -3.0486 -2.2550 37 1 4.9081 -3.6129 -2.0131 38 1 4.4896 -1.2851 -3.3048 39 1 5.7860 -1.3687 -2.0727 40 1 3.0704 -0.0677 -1.9088 41 1 4.5960 0.3946 -1.1036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172240370.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:20 Heat of formation + Delta-G solvation = -0.294014 kcal Electronic energy + Delta-G solvation = -21826.225912 eV Core-core repulsion = 18899.965534 eV Total energy + Delta-G solvation = -2926.260378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87262 -38.17498 -34.24946 -32.33433 -31.93070 -30.60543 -29.78188 -28.03223 -26.71548 -23.82549 -23.07855 -22.42495 -20.13760 -19.47190 -18.92930 -18.67963 -16.78898 -16.26648 -15.10730 -14.99851 -14.53189 -14.21830 -14.10731 -13.75611 -12.86638 -12.84559 -12.53646 -12.39539 -12.36450 -12.14539 -11.89883 -11.42937 -11.26512 -10.84707 -10.63738 -10.55032 -10.40052 -10.25216 -10.02148 -9.82894 -9.77431 -9.71220 -9.62834 -9.46037 -8.91385 -8.56880 -8.31916 -6.95413 -5.98321 -4.00922 2.35091 3.49747 3.62938 3.91091 4.32341 4.70261 4.88805 4.94820 5.11943 5.26697 5.36621 5.44590 5.52193 5.55975 5.62180 5.65173 5.84188 5.89188 6.03625 6.12345 6.18045 6.23977 6.28474 6.34670 6.39195 6.43543 6.47739 6.57809 6.61556 6.64907 6.77606 6.86198 6.86939 7.00642 7.04555 7.16511 7.26857 7.46311 7.79401 8.13277 8.47204 8.72089 9.01833 9.68958 11.11183 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.009607 C = 0.007890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.861902 B = 2913.750802 C = 3547.914720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.088 3.912 3 Si 0.861 3.139 4 H -0.301 1.301 5 H -0.309 1.309 6 H -0.199 1.199 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.210 3.790 10 N -0.671 5.671 11 C 0.106 3.894 12 C -0.148 4.148 13 C 0.100 3.900 14 H 0.102 0.898 15 C -0.203 4.203 16 C -0.159 4.159 17 C 0.087 3.913 18 H 0.107 0.893 19 C -0.125 4.125 20 O -0.366 6.366 21 C -0.133 4.133 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.261 0.739 26 H 0.308 0.692 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.623 -5.088 4.508 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.115 4.115 3 Si 0.690 3.310 4 H -0.229 1.229 5 H -0.237 1.237 6 H -0.120 1.120 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.121 3.879 10 N -0.301 5.301 11 C -0.003 4.003 12 C -0.186 4.186 13 C 0.042 3.958 14 H 0.120 0.880 15 C -0.221 4.221 16 C -0.177 4.177 17 C 0.029 3.971 18 H 0.124 0.876 19 C -0.163 4.163 20 O -0.285 6.285 21 C -0.172 4.172 22 C -0.153 4.153 23 C -0.158 4.158 24 C -0.163 4.163 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.950 -4.359 4.791 11.048 hybrid contribution 0.818 -0.007 -0.442 0.930 sum 9.768 -4.366 4.349 11.550 Atomic orbital electron populations 1.69952 1.06791 1.27081 1.50042 1.24897 0.94275 0.99534 0.92816 0.87373 0.84865 0.81985 0.76794 1.22891 1.23720 1.12023 1.20655 0.87331 0.93974 1.51407 0.91430 1.19637 0.95522 0.87072 0.85675 1.61576 1.15130 1.50033 1.03353 1.21333 0.93080 0.96348 0.89567 1.22526 0.98843 1.01547 0.95666 1.22254 0.90681 0.88158 0.94729 0.88029 1.24159 0.96296 0.98295 1.03347 1.24327 0.97365 0.97741 0.98297 1.22683 0.91739 0.90311 0.92370 0.87567 1.22428 1.00650 0.99941 0.93259 1.89572 1.18310 1.63076 1.57543 1.22946 0.98441 1.00813 0.95004 1.22343 1.00161 0.95859 0.96935 1.22302 0.98446 0.96130 0.98902 1.22592 0.99244 0.97208 0.97283 0.92988 0.87486 0.92994 0.90562 0.92022 0.84690 0.84356 0.91600 0.86993 0.94263 0.92310 0.91416 0.93577 0.92864 0.93121 0.91032 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.09 2.40 4.55 -17.82 -0.08 2.32 16 3 Si 0.86 21.45 23.99 -169.99 -4.08 17.38 16 4 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.20 -4.59 4.96 56.52 0.28 -4.31 16 7 C -0.50 -12.69 6.01 -34.44 -0.21 -12.90 16 8 H 0.07 1.93 7.73 -52.49 -0.41 1.52 16 9 C 0.21 4.44 0.40 -131.63 -0.05 4.39 16 10 N -0.67 -13.35 2.87 -92.75 -0.27 -13.62 16 11 C 0.11 1.97 1.70 -67.40 -0.11 1.85 16 12 C -0.15 -2.31 5.06 -26.16 -0.13 -2.45 16 13 C 0.10 1.50 4.71 -26.90 -0.13 1.37 16 14 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.20 -2.86 9.49 -35.59 -0.34 -3.19 16 16 C -0.16 -2.45 9.45 -35.59 -0.34 -2.78 16 17 C 0.09 1.52 4.72 -26.90 -0.13 1.39 16 18 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 19 C -0.12 -2.53 4.86 -26.17 -0.13 -2.66 16 20 O -0.37 -6.51 11.47 -35.23 -0.40 -6.91 16 21 C -0.13 -2.49 4.41 -25.03 -0.11 -2.60 16 22 C -0.12 -1.99 6.91 -24.69 -0.17 -2.16 16 23 C -0.12 -2.05 6.83 -25.07 -0.17 -2.23 16 24 C -0.12 -2.56 4.14 -25.61 -0.11 -2.67 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.31 5.59 8.11 -39.29 -0.32 5.27 16 27 H 0.05 0.99 4.67 -51.93 -0.24 0.75 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 32 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 33 H 0.11 2.65 5.64 -51.93 -0.29 2.36 16 34 H 0.04 0.68 7.82 -51.93 -0.41 0.27 16 35 H 0.06 1.17 7.39 -51.93 -0.38 0.79 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.65 6.09 -51.93 -0.32 1.34 16 41 H 0.05 0.98 6.88 -51.93 -0.36 0.62 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -28.73 296.71 -8.33 -37.07 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.63 Total: 9.75 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.20 Total: -22.32 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.51 Total: -39.44 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.40 Total: -6.91 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.08 Total: 17.38 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.73 -8.33 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172240370.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.773 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds