Wall clock time and date at job start Mon Mar 30 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48495 * 109.46863 * 269.99938 * 3 2 1 5 5 H 1.48501 * 109.47032 * 29.99806 * 3 2 1 6 6 H 1.48500 * 109.46949 * 149.99753 * 3 2 1 7 7 C 1.37876 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00226 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50033 * 299.91844 * 9 7 2 11 11 C 1.53120 * 109.50204 * 59.99761 * 9 7 2 12 12 C 1.53121 * 109.15751 * 177.63360 * 11 9 7 13 13 C 1.53034 * 109.28108 * 302.34596 * 12 11 9 14 14 N 1.46848 * 109.52459 * 59.17685 * 13 12 11 15 15 C 1.46896 * 111.00008 * 174.16062 * 14 13 12 16 16 C 1.54446 * 109.15741 * 299.10444 * 15 14 13 17 17 C 1.53779 * 108.00479 * 290.35493 * 16 15 14 18 18 H 1.09003 * 112.21134 * 171.23151 * 17 16 15 19 19 C 1.51849 * 107.94800 * 46.95390 * 17 16 15 20 20 C 1.31558 * 107.67284 * 269.86604 * 19 17 16 21 21 C 1.51850 * 107.66796 * 359.97438 * 20 19 17 22 22 H 1.08995 * 112.30964 * 213.71909 * 21 20 19 23 23 C 1.53300 * 109.50390 * 179.02044 * 15 14 13 24 24 O 1.44912 * 107.63777 * 295.33464 * 17 16 15 25 25 C 1.46847 * 111.19771 * 298.26273 * 14 13 12 26 26 H 0.96996 * 119.99518 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52375 * 57.73170 * 11 9 7 28 28 H 1.09001 * 109.57355 * 297.56969 * 11 9 7 29 29 H 1.09004 * 109.49823 * 182.40137 * 12 11 9 30 30 H 1.09004 * 109.49704 * 62.28992 * 12 11 9 31 31 H 1.09001 * 109.45781 * 299.16460 * 13 12 11 32 32 H 1.08997 * 109.45394 * 179.19160 * 13 12 11 33 33 H 1.08996 * 109.53781 * 58.91417 * 15 14 13 34 34 H 1.09001 * 109.25434 * 171.18162 * 16 15 14 35 35 H 1.09004 * 110.70409 * 50.37741 * 16 15 14 36 36 H 1.08003 * 126.16527 * 89.85985 * 19 17 16 37 37 H 1.07996 * 126.16966 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.61649 * 309.22222 * 23 15 14 39 39 H 1.09004 * 109.61577 * 188.69522 * 23 15 14 40 40 H 1.09010 * 109.45707 * 181.75580 * 25 14 13 41 41 H 1.09001 * 109.45818 * 301.72149 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9344 -1.2720 13 6 0.6939 -5.0571 -1.2389 14 7 1.5098 -4.9350 -0.0241 15 6 2.4265 -6.0748 0.1111 16 6 1.6036 -7.3777 0.2136 17 6 0.8821 -7.3786 1.5716 18 1 0.1616 -8.1923 1.6548 19 6 0.2377 -6.0166 1.7600 20 6 1.1109 -5.2421 2.3670 21 6 2.3670 -6.0617 2.6045 22 1 2.8722 -5.7858 3.5301 23 6 3.2769 -5.9005 1.3746 24 8 1.8948 -7.4315 2.6068 25 6 2.2442 -3.6635 -0.0034 26 1 -0.4849 0.8401 -0.0004 27 1 0.9924 -2.4836 -2.1398 28 1 -0.3666 -1.7789 -1.2305 29 1 -0.9408 -4.0161 -2.1815 30 1 -0.9968 -4.0156 -0.4016 31 1 1.3360 -4.9834 -2.1166 32 1 0.1864 -6.0218 -1.2402 33 1 3.0775 -6.1245 -0.7617 34 1 2.2765 -8.2333 0.1561 35 1 0.8701 -7.4345 -0.5907 36 1 -0.7581 -5.7345 1.4513 37 1 0.9611 -4.2099 2.6468 38 1 3.7262 -4.9073 1.3793 39 1 4.0595 -6.6590 1.3965 40 1 2.8629 -3.6161 0.8928 41 1 2.8791 -3.5964 -0.8869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172242593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:14 Heat of formation + Delta-G solvation = 7.426972 kcal Electronic energy + Delta-G solvation = -21711.003711 eV Core-core repulsion = 18785.078141 eV Total energy + Delta-G solvation = -2925.925570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22074 -37.77617 -34.25846 -32.46514 -31.45132 -31.27244 -29.67970 -29.48591 -25.02569 -23.96114 -23.48537 -21.88907 -21.15142 -19.23116 -18.94381 -18.63792 -16.90829 -16.37855 -15.68703 -14.70275 -14.59545 -14.25244 -13.79296 -13.49221 -13.17338 -12.80365 -12.75404 -12.44283 -12.17473 -12.12069 -12.08458 -11.80419 -11.47324 -11.04479 -10.92521 -10.72517 -10.57601 -10.53519 -10.21009 -9.94370 -9.81018 -9.60817 -9.44012 -8.98129 -8.74787 -8.64911 -8.29219 -7.01622 -5.98597 -4.04593 2.88016 3.29334 3.36544 3.39217 4.23522 4.37772 4.53753 4.84600 5.02665 5.22506 5.26737 5.31468 5.31728 5.39769 5.65904 5.73908 5.77906 5.81963 5.83851 6.03520 6.05714 6.10511 6.16945 6.20294 6.34404 6.44158 6.53854 6.55107 6.73590 6.77423 6.82528 7.00450 7.02276 7.22674 7.41854 7.45203 7.70746 7.75464 7.86129 8.08267 8.17483 8.48547 8.99691 9.59940 11.07080 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029619 B = 0.006394 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.104126 B = 4378.230849 C = 4709.171486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.060 3.940 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.114 4.114 13 C 0.058 3.942 14 N -0.516 5.516 15 C 0.081 3.919 16 C -0.133 4.133 17 C 0.099 3.901 18 H 0.098 0.902 19 C -0.155 4.155 20 C -0.142 4.142 21 C 0.098 3.902 22 H 0.103 0.897 23 C -0.138 4.138 24 O -0.369 6.369 25 C 0.061 3.939 26 H 0.259 0.741 27 H 0.027 0.973 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -12.600 1.060 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.042 3.958 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.152 4.152 13 C -0.070 4.070 14 N -0.241 5.241 15 C -0.028 4.028 16 C -0.171 4.171 17 C 0.042 3.958 18 H 0.116 0.884 19 C -0.173 4.173 20 C -0.161 4.161 21 C 0.041 3.959 22 H 0.121 0.879 23 C -0.175 4.175 24 O -0.288 6.288 25 C -0.065 4.065 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 1.041 -12.680 1.589 12.822 hybrid contribution 1.057 1.235 -1.180 2.009 sum 2.098 -11.445 0.409 11.643 Atomic orbital electron populations 1.69889 1.05798 1.26266 1.50726 1.24917 0.94801 0.98867 0.95162 0.86663 0.79926 0.83787 0.78011 1.20842 1.21254 1.19998 1.21170 0.92784 0.90807 1.50622 0.93008 1.18603 0.92462 0.90126 0.94642 0.94874 1.21652 0.99995 0.94719 0.98516 1.21639 0.97116 0.96511 0.99906 1.22087 0.95883 0.98667 0.90358 1.62960 1.23198 1.01629 1.36308 1.21825 0.93080 0.91544 0.96346 1.22503 0.99640 0.97066 0.97867 1.22252 0.89258 0.97092 0.87221 0.88388 1.23568 0.99822 0.95037 0.98857 1.23760 0.93064 0.99282 0.99957 1.22306 0.94604 0.81349 0.97675 0.87934 1.22383 0.97606 1.02928 0.94609 1.89542 1.54473 1.27862 1.56963 1.22393 0.96648 0.88854 0.98628 0.93103 0.95414 0.89260 0.93872 0.92236 0.96398 0.92225 0.94923 0.91469 0.90509 0.85080 0.84424 0.89782 0.91314 0.91833 0.96830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.35 55.43 0.63 -24.26 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.78 8.57 -34.44 -0.29 -14.08 16 8 H 0.05 1.38 7.75 -52.48 -0.41 0.97 16 9 C 0.06 1.44 2.26 -91.69 -0.21 1.23 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.11 -2.55 5.02 -26.61 -0.13 -2.69 16 12 C -0.11 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C 0.06 0.97 5.01 -3.84 -0.02 0.95 16 14 N -0.52 -8.75 0.91 -225.60 -0.21 -8.96 16 15 C 0.08 1.22 2.32 -66.80 -0.15 1.06 16 16 C -0.13 -1.75 5.41 -25.57 -0.14 -1.89 16 17 C 0.10 1.37 4.66 -26.91 -0.13 1.24 16 18 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 19 C -0.15 -2.32 8.29 -35.59 -0.30 -2.61 16 20 C -0.14 -2.26 7.89 -35.59 -0.28 -2.54 16 21 C 0.10 1.44 4.71 -26.88 -0.13 1.32 16 22 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 23 C -0.14 -1.99 5.25 -26.14 -0.14 -2.12 16 24 O -0.37 -5.68 11.47 -35.23 -0.40 -6.09 16 25 C 0.06 1.24 3.79 -3.84 -0.01 1.22 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 2.32 6.15 -51.93 -0.32 2.00 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.88 5.85 -51.93 -0.30 0.58 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.96 5.96 -51.93 -0.31 0.65 16 36 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.14 2.38 8.06 -52.49 -0.42 1.95 16 38 H 0.08 1.27 5.73 -51.93 -0.30 0.97 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.27 5.55 -51.92 -0.29 0.98 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -27.37 300.15 -9.22 -36.59 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.56 Total: 1.73 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.19 Total: -19.56 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.42 Total: -33.21 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.40 Total: -6.09 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.37 -9.22 -36.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172242593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.016 kcal (2) G-P(sol) polarization free energy of solvation -27.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds