Wall clock time and date at job start Mon Mar 30 2020 00:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00203 * 2 1 4 4 H 1.48495 * 109.46863 * 269.99938 * 3 2 1 5 5 H 1.48501 * 109.47032 * 29.99806 * 3 2 1 6 6 H 1.48500 * 109.46949 * 149.99753 * 3 2 1 7 7 C 1.37876 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99983 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00226 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.50033 * 299.91844 * 9 7 2 11 11 C 1.53120 * 109.50204 * 59.99761 * 9 7 2 12 12 C 1.53121 * 109.15751 * 177.63360 * 11 9 7 13 13 C 1.53034 * 109.28108 * 302.34596 * 12 11 9 14 14 N 1.46848 * 109.52459 * 59.17685 * 13 12 11 15 15 C 1.46896 * 111.00008 * 174.16062 * 14 13 12 16 16 C 1.54446 * 109.15741 * 299.10444 * 15 14 13 17 17 C 1.53779 * 108.00479 * 290.35493 * 16 15 14 18 18 H 1.09003 * 112.21134 * 171.23151 * 17 16 15 19 19 C 1.51849 * 107.94800 * 46.95390 * 17 16 15 20 20 C 1.31558 * 107.67284 * 269.86604 * 19 17 16 21 21 C 1.51850 * 107.66796 * 359.97438 * 20 19 17 22 22 H 1.08995 * 112.30964 * 213.71909 * 21 20 19 23 23 C 1.53300 * 109.50390 * 179.02044 * 15 14 13 24 24 O 1.44912 * 107.63777 * 295.33464 * 17 16 15 25 25 C 1.46847 * 111.19771 * 298.26273 * 14 13 12 26 26 H 0.96996 * 119.99518 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.52375 * 57.73170 * 11 9 7 28 28 H 1.09001 * 109.57355 * 297.56969 * 11 9 7 29 29 H 1.09004 * 109.49823 * 182.40137 * 12 11 9 30 30 H 1.09004 * 109.49704 * 62.28992 * 12 11 9 31 31 H 1.09001 * 109.45781 * 299.16460 * 13 12 11 32 32 H 1.08997 * 109.45394 * 179.19160 * 13 12 11 33 33 H 1.08996 * 109.53781 * 58.91417 * 15 14 13 34 34 H 1.09001 * 109.25434 * 171.18162 * 16 15 14 35 35 H 1.09004 * 110.70409 * 50.37741 * 16 15 14 36 36 H 1.08003 * 126.16527 * 89.85985 * 19 17 16 37 37 H 1.07996 * 126.16966 * 180.02562 * 20 19 17 38 38 H 1.09005 * 109.61649 * 309.22222 * 23 15 14 39 39 H 1.09004 * 109.61577 * 188.69522 * 23 15 14 40 40 H 1.09010 * 109.45707 * 181.75580 * 25 14 13 41 41 H 1.09001 * 109.45818 * 301.72149 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6249 -2.5579 0.8908 11 6 0.3709 -2.5813 -1.2497 12 6 -0.3456 -3.9344 -1.2720 13 6 0.6939 -5.0571 -1.2389 14 7 1.5098 -4.9350 -0.0241 15 6 2.4265 -6.0748 0.1111 16 6 1.6036 -7.3777 0.2136 17 6 0.8821 -7.3786 1.5716 18 1 0.1616 -8.1923 1.6548 19 6 0.2377 -6.0166 1.7600 20 6 1.1109 -5.2421 2.3670 21 6 2.3670 -6.0617 2.6045 22 1 2.8722 -5.7858 3.5301 23 6 3.2769 -5.9005 1.3746 24 8 1.8948 -7.4315 2.6068 25 6 2.2442 -3.6635 -0.0034 26 1 -0.4849 0.8401 -0.0004 27 1 0.9924 -2.4836 -2.1398 28 1 -0.3666 -1.7789 -1.2305 29 1 -0.9408 -4.0161 -2.1815 30 1 -0.9968 -4.0156 -0.4016 31 1 1.3360 -4.9834 -2.1166 32 1 0.1864 -6.0218 -1.2402 33 1 3.0775 -6.1245 -0.7617 34 1 2.2765 -8.2333 0.1561 35 1 0.8701 -7.4345 -0.5907 36 1 -0.7581 -5.7345 1.4513 37 1 0.9611 -4.2099 2.6468 38 1 3.7262 -4.9073 1.3793 39 1 4.0595 -6.6590 1.3965 40 1 2.8629 -3.6161 0.8928 41 1 2.8791 -3.5964 -0.8869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172242593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:14 Heat of formation + Delta-G solvation = -6.306623 kcal Electronic energy + Delta-G solvation = -21711.599244 eV Core-core repulsion = 18785.078141 eV Total energy + Delta-G solvation = -2926.521104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41388 -39.28606 -35.89106 -34.17745 -32.67055 -32.57853 -31.16843 -31.03497 -26.92769 -25.37400 -24.73353 -23.26447 -22.76226 -20.45296 -20.39283 -20.12063 -18.39641 -17.96877 -17.18061 -16.54256 -15.83949 -15.63452 -15.06315 -14.97335 -14.77952 -14.40257 -14.28926 -13.86837 -13.57540 -13.40322 -13.32991 -13.14288 -12.92216 -12.84777 -12.66124 -12.48383 -12.06994 -11.81351 -11.69974 -11.59293 -11.41873 -11.15073 -10.84057 -10.69433 -10.55161 -10.33495 -9.99201 -8.34808 -8.07318 -6.20503 1.39234 1.40685 1.50006 1.67038 2.42336 3.06662 3.18961 3.19865 3.69402 3.87844 4.07295 4.09665 4.20904 4.24200 4.28938 4.34799 4.47238 4.61963 4.65778 4.73254 4.77338 4.79129 4.89429 4.90667 4.97737 4.99194 5.05830 5.13688 5.23596 5.29392 5.38552 5.44789 5.57081 5.65413 5.69627 5.82173 6.02617 6.17703 6.24783 6.26192 6.44703 6.51804 6.93245 7.47219 8.96669 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.029619 B = 0.006394 C = 0.005944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.104126 B = 4378.230849 C = 4709.171486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.063 3.937 10 H 0.002 0.998 11 C -0.105 4.105 12 C -0.105 4.105 13 C 0.061 3.939 14 N -0.512 5.512 15 C 0.076 3.924 16 C -0.125 4.125 17 C 0.100 3.900 18 H 0.124 0.876 19 C -0.149 4.149 20 C -0.163 4.163 21 C 0.101 3.899 22 H 0.112 0.888 23 C -0.135 4.135 24 O -0.377 6.377 25 C 0.079 3.921 26 H 0.259 0.741 27 H 0.014 0.986 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.093 0.907 33 H 0.034 0.966 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -14.563 0.644 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.044 3.956 10 H 0.020 0.980 11 C -0.143 4.143 12 C -0.143 4.143 13 C -0.067 4.067 14 N -0.237 5.237 15 C -0.032 4.032 16 C -0.162 4.162 17 C 0.042 3.958 18 H 0.141 0.859 19 C -0.168 4.168 20 C -0.182 4.182 21 C 0.043 3.957 22 H 0.130 0.870 23 C -0.173 4.173 24 O -0.297 6.297 25 C -0.048 4.048 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.111 0.889 33 H 0.052 0.948 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.149 0.851 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 1.478 -14.657 1.173 14.778 hybrid contribution 0.890 1.853 -1.031 2.300 sum 2.368 -12.804 0.142 13.022 Atomic orbital electron populations 1.70026 1.07001 1.26886 1.51355 1.25644 0.95598 1.02017 0.94949 0.85717 0.78869 0.79953 0.78075 1.20413 1.20906 1.19401 1.21561 0.92841 0.92520 1.50524 0.93507 1.18477 0.92730 0.90807 0.93592 0.97964 1.21472 0.99045 0.96451 0.97355 1.21530 0.97447 0.94650 1.00691 1.22098 0.95329 0.99201 0.90028 1.62939 1.23323 1.00968 1.36464 1.21966 0.93184 0.91491 0.96584 1.22487 0.99865 0.96131 0.97765 1.22430 0.89307 0.96800 0.87220 0.85868 1.23748 0.99552 0.95805 0.97650 1.23676 0.94543 0.98599 1.01365 1.22303 0.94033 0.81037 0.98280 0.87020 1.22359 0.97844 1.02767 0.94298 1.89536 1.54870 1.27710 1.57590 1.22019 0.95446 0.89431 0.97929 0.93181 0.96734 0.92642 0.91894 0.92705 0.96689 0.88914 0.94800 0.89717 0.89144 0.85085 0.86903 0.91045 0.89621 0.91930 0.98165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.71 11.35 21.45 0.24 -52.46 16 2 C 0.02 0.93 5.30 84.65 0.45 1.38 16 3 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.54 -29.53 8.57 25.60 0.22 -29.31 16 8 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 9 C 0.06 3.09 2.26 -11.49 -0.03 3.07 16 10 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.10 -4.96 5.02 30.68 0.15 -4.81 16 12 C -0.11 -3.87 6.09 30.65 0.19 -3.68 16 13 C 0.06 1.92 5.01 86.32 0.43 2.35 16 14 N -0.51 -16.77 0.91 -867.67 -0.79 -17.56 16 15 C 0.08 2.10 2.32 45.51 0.11 2.21 16 16 C -0.12 -2.79 5.41 31.35 0.17 -2.62 16 17 C 0.10 2.41 4.66 30.48 0.14 2.55 16 18 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 19 C -0.15 -4.23 8.29 25.48 0.21 -4.02 16 20 C -0.16 -5.14 7.89 25.48 0.20 -4.94 16 21 C 0.10 2.82 4.71 30.50 0.14 2.97 16 22 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 23 C -0.14 -3.66 5.25 30.98 0.16 -3.50 16 24 O -0.38 -10.57 11.47 -148.98 -1.71 -12.28 16 25 C 0.08 3.23 3.79 86.32 0.33 3.55 16 26 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 2.99 6.15 -2.39 -0.01 2.98 16 29 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 2.36 5.85 -2.39 -0.01 2.35 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.80 5.96 -2.38 -0.01 1.79 16 36 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.11 4.10 8.06 -2.91 -0.02 4.07 16 38 H 0.07 2.11 5.73 -2.38 -0.01 2.10 16 39 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.06 2.55 5.55 -2.38 -0.01 2.53 16 41 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 Total: -1.00 -59.69 300.15 3.65 -56.04 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.00 Total: 15.23 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 2.88 Total: -34.80 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -0.55 Total: -70.02 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.71 Total: -12.28 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -59.69 3.65 -56.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172242593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.734 kcal (2) G-P(sol) polarization free energy of solvation -59.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds