Wall clock time and date at job start Mon Mar 30 2020 00:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38162 * 120.02460 * 2 1 4 4 C 1.38247 * 120.05352 * 179.97438 * 3 2 1 5 5 C 1.38285 * 120.11130 * 0.27883 * 4 3 2 6 6 C 1.38123 * 120.05549 * 359.44969 * 5 4 3 7 7 C 1.50702 * 120.03154 * 180.27933 * 6 5 4 8 8 N 1.46901 * 109.46827 * 260.27134 * 7 6 5 9 9 C 1.46897 * 110.99585 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47431 * 35.00228 * 9 8 7 11 11 C 1.52996 * 109.47435 * 274.99790 * 9 8 7 12 12 C 1.53008 * 109.46986 * 155.00018 * 9 8 7 13 13 C 1.52998 * 109.47038 * 294.99736 * 12 9 8 14 14 C 1.50696 * 109.47347 * 179.97438 * 13 12 9 15 15 H 1.07997 * 119.99820 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00119 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00297 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99900 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47087 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47139 * 120.00486 * 18 16 14 21 21 H 1.48499 * 109.46973 * 240.00146 * 18 16 14 22 22 C 1.38706 * 120.02810 * 179.97438 * 2 1 3 23 23 O 1.35905 * 120.05552 * 359.97438 * 22 2 1 24 24 H 1.08993 * 109.47457 * 89.99807 * 1 2 3 25 25 H 1.09002 * 109.46629 * 209.99600 * 1 2 3 26 26 H 1.08999 * 109.47307 * 329.99322 * 1 2 3 27 27 H 1.07998 * 119.97579 * 359.95925 * 3 2 1 28 28 H 1.08002 * 119.94131 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.97313 * 179.71674 * 5 4 3 30 30 H 1.09003 * 109.46937 * 20.26792 * 7 6 5 31 31 H 1.08999 * 109.47324 * 140.26617 * 7 6 5 32 32 H 1.00897 * 110.99995 * 303.94925 * 8 7 6 33 33 H 1.09007 * 109.47059 * 300.00328 * 11 9 8 34 34 H 1.08997 * 109.47289 * 60.00316 * 11 9 8 35 35 H 1.08998 * 109.47822 * 180.02562 * 11 9 8 36 36 H 1.08993 * 109.47101 * 54.99636 * 12 9 8 37 37 H 1.08997 * 109.47015 * 175.00058 * 12 9 8 38 38 H 1.09000 * 109.47432 * 300.00504 * 13 12 9 39 39 H 1.09007 * 109.47235 * 59.99791 * 13 12 9 40 40 H 0.96993 * 120.00136 * 180.02562 * 17 16 14 41 41 H 0.96704 * 113.99927 * 89.99951 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 -0.0047 6 6 3.5887 -1.1975 0.0009 7 6 4.3460 -2.5004 0.0015 8 7 4.3847 -3.0449 -1.3623 9 6 5.1172 -4.3176 -1.4004 10 1 4.9340 -4.8700 -0.4789 11 6 6.6153 -4.0399 -1.5393 12 6 4.6392 -5.1456 -2.5950 13 6 3.1716 -5.5292 -2.3950 14 6 2.7005 -6.3442 -3.5718 15 1 3.3798 -6.5661 -4.3815 16 6 1.4024 -6.8067 -3.6146 17 7 0.5750 -6.5361 -2.6288 18 14 0.8183 -7.8164 -5.0738 19 1 1.9331 -7.9791 -6.0412 20 1 0.3720 -9.1526 -4.6042 21 1 -0.3145 -7.1205 -5.7355 22 6 2.2012 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6584 2.1315 -0.0007 28 1 4.1194 2.1331 0.0001 29 1 5.3552 0.0042 -0.0089 30 1 5.3634 -2.3292 0.3533 31 1 3.8478 -3.2100 0.6621 32 1 3.4533 -3.1521 -1.7354 33 1 6.7985 -3.4874 -2.4610 34 1 6.9560 -3.4500 -0.6884 35 1 7.1589 -4.9842 -1.5681 36 1 4.7401 -4.5585 -3.5077 37 1 5.2431 -6.0494 -2.6756 38 1 3.0706 -6.1163 -1.4822 39 1 2.5676 -4.6254 -2.3143 40 1 -0.3382 -6.8618 -2.6588 41 1 1.3269 -2.7203 -0.8815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:46 Heat of formation + Delta-G solvation = -45.054118 kcal Electronic energy + Delta-G solvation = -19872.150864 eV Core-core repulsion = 16943.949543 eV Total energy + Delta-G solvation = -2928.201321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96480 -37.10832 -36.39922 -33.80242 -32.78423 -31.34464 -29.68202 -28.80194 -26.76412 -25.45574 -24.42330 -21.77044 -21.40281 -20.67529 -19.50793 -18.00005 -16.48343 -16.01191 -15.79636 -15.18898 -15.02344 -14.53438 -14.40873 -13.97563 -13.29950 -13.15249 -12.81790 -12.57745 -12.44192 -12.37952 -12.06744 -11.88833 -11.71753 -11.59773 -11.36432 -11.19608 -11.09630 -10.93649 -10.48702 -10.29082 -10.10555 -9.78447 -9.29703 -9.04880 -8.61712 -8.39935 -8.38093 -7.95697 -6.02932 -4.04868 1.34369 1.38944 3.29405 3.37425 3.41595 3.65409 4.44247 4.46449 4.67167 4.86727 4.91823 5.02246 5.29399 5.33110 5.44057 5.52571 5.60288 5.67022 5.69538 5.73938 5.85304 5.91288 5.93442 6.07725 6.18632 6.24645 6.35308 6.47866 6.49924 6.52402 6.55291 6.67494 6.89591 6.93034 7.06541 7.48139 7.58644 7.77104 7.84830 7.94407 7.96854 8.40285 9.01756 9.59598 11.08022 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.005270 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.571189 B = 5311.714279 C = 6565.825360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.114 4.114 3 C -0.112 4.112 4 C -0.132 4.132 5 C -0.095 4.095 6 C -0.097 4.097 7 C 0.100 3.900 8 N -0.679 5.679 9 C 0.081 3.919 10 H 0.039 0.961 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.116 3.884 23 O -0.494 6.494 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.348 0.652 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.013 0.987 39 H 0.013 0.987 40 H 0.260 0.740 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 13.982 5.991 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.115 4.115 3 C -0.130 4.130 4 C -0.150 4.150 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.029 4.029 8 N -0.313 5.313 9 C -0.028 4.028 10 H 0.057 0.943 11 C -0.194 4.194 12 C -0.153 4.153 13 C -0.015 4.015 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C 0.070 3.930 23 O -0.305 6.305 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.169 0.831 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.388 14.351 6.458 16.633 hybrid contribution -1.115 -1.216 -0.858 1.860 sum 4.273 13.135 5.600 14.904 Atomic orbital electron populations 1.20683 0.90824 1.02961 1.02405 1.20217 0.96688 0.92595 1.01956 1.20878 0.94189 0.96933 1.01019 1.21068 0.94185 0.97912 1.01800 1.20891 0.99770 0.91300 0.99407 1.20189 0.92816 0.95885 1.00934 1.20795 0.98668 0.92089 0.91376 1.60701 1.23062 1.28303 1.19268 1.21626 0.93383 0.88835 0.98957 0.94328 1.21786 0.95618 1.00566 1.01407 1.21837 0.99910 0.97694 0.95849 1.19111 0.89283 0.96002 0.97074 1.21273 0.96277 1.32852 1.05310 0.92658 1.25010 0.96928 0.96331 0.96075 1.69959 1.05709 1.46160 1.31541 0.86568 0.78724 0.80034 0.82884 1.19757 1.21068 1.21027 1.18245 0.89334 0.85345 1.00047 1.84751 1.76049 1.35369 1.34353 0.91266 0.90727 0.91850 0.86111 0.86143 0.85869 0.90838 0.93738 0.83131 0.92391 0.93814 0.92997 0.92506 0.92677 0.96847 0.96931 0.93079 0.74411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.79 36.01 0.35 -0.94 16 2 C -0.11 -1.53 5.89 -104.47 -0.62 -2.15 16 3 C -0.11 -1.32 9.70 -39.61 -0.38 -1.70 16 4 C -0.13 -1.51 10.04 -39.56 -0.40 -1.90 16 5 C -0.09 -1.21 9.67 -39.61 -0.38 -1.59 16 6 C -0.10 -1.43 5.41 -104.47 -0.56 -1.99 16 7 C 0.10 1.52 5.27 -4.97 -0.03 1.49 16 8 N -0.68 -11.41 6.30 -107.99 -0.68 -12.09 16 9 C 0.08 1.41 2.65 -67.71 -0.18 1.23 16 10 H 0.04 0.70 7.80 -51.93 -0.41 0.30 16 11 C -0.14 -1.99 9.41 37.16 0.35 -1.64 16 12 C -0.12 -2.34 4.74 -26.73 -0.13 -2.47 16 13 C 0.02 0.56 4.80 -27.89 -0.13 0.42 16 14 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 18 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.12 1.76 6.65 -39.22 -0.26 1.49 16 23 O -0.49 -8.04 11.74 -19.44 -0.23 -8.27 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 26 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.36 8.04 -52.49 -0.42 0.94 16 30 H 0.07 1.02 7.30 -51.93 -0.38 0.64 16 31 H 0.04 0.75 7.77 -51.93 -0.40 0.34 16 32 H 0.35 6.38 6.16 -39.29 -0.24 6.13 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.32 6.43 -51.93 -0.33 -0.02 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.40 6.02 8.81 45.56 0.40 6.42 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -29.84 337.16 -8.80 -38.64 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.91 Total: 8.56 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -2.78 Total: -22.95 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.06 Total: -37.48 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.23 Total: -8.27 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.84 -8.80 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.418 kcal (2) G-P(sol) polarization free energy of solvation -29.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds