Wall clock time and date at job start Mon Mar 30 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38162 * 120.02460 * 2 1 4 4 C 1.38247 * 120.05352 * 179.97438 * 3 2 1 5 5 C 1.38285 * 120.11130 * 0.27883 * 4 3 2 6 6 C 1.38123 * 120.05549 * 359.44969 * 5 4 3 7 7 C 1.50702 * 120.03154 * 180.27933 * 6 5 4 8 8 N 1.46901 * 109.46827 * 260.27134 * 7 6 5 9 9 C 1.46897 * 110.99585 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47553 * 324.99417 * 9 8 7 11 11 C 1.52999 * 109.47241 * 84.99945 * 9 8 7 12 12 C 1.53001 * 109.47234 * 204.99714 * 9 8 7 13 13 C 1.53004 * 109.47037 * 64.99923 * 12 9 8 14 14 C 1.50696 * 109.47338 * 180.02562 * 13 12 9 15 15 H 1.08005 * 120.00229 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00158 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99680 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00051 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47476 * 89.99918 * 18 16 14 20 20 H 1.48502 * 109.47125 * 210.00260 * 18 16 14 21 21 H 1.48504 * 109.46963 * 329.99645 * 18 16 14 22 22 C 1.38706 * 120.02810 * 179.97438 * 2 1 3 23 23 O 1.35905 * 120.05552 * 359.97438 * 22 2 1 24 24 H 1.08993 * 109.47457 * 89.99807 * 1 2 3 25 25 H 1.09002 * 109.46629 * 209.99600 * 1 2 3 26 26 H 1.08999 * 109.47307 * 329.99322 * 1 2 3 27 27 H 1.07998 * 119.97579 * 359.95925 * 3 2 1 28 28 H 1.08002 * 119.94131 * 179.97438 * 4 3 2 29 29 H 1.08001 * 119.97313 * 179.71674 * 5 4 3 30 30 H 1.09003 * 109.46937 * 20.26792 * 7 6 5 31 31 H 1.08999 * 109.47324 * 140.26617 * 7 6 5 32 32 H 1.00893 * 111.00134 * 56.04186 * 8 7 6 33 33 H 1.09003 * 109.47236 * 179.97438 * 11 9 8 34 34 H 1.08999 * 109.47345 * 299.99672 * 11 9 8 35 35 H 1.08998 * 109.47052 * 60.00055 * 11 9 8 36 36 H 1.08994 * 109.47812 * 185.00050 * 12 9 8 37 37 H 1.09005 * 109.47035 * 305.00312 * 12 9 8 38 38 H 1.09000 * 109.47350 * 300.00768 * 13 12 9 39 39 H 1.09005 * 109.46890 * 60.00300 * 13 12 9 40 40 H 0.96998 * 119.99063 * 179.97438 * 17 16 14 41 41 H 0.96704 * 113.99927 * 89.99951 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 -0.0047 6 6 3.5887 -1.1975 0.0009 7 6 4.3460 -2.5004 0.0015 8 7 4.3847 -3.0449 -1.3623 9 6 5.1172 -4.3176 -1.4004 10 1 5.9377 -4.2863 -0.6835 11 6 4.1688 -5.4630 -1.0405 12 6 5.6771 -4.5419 -2.8065 13 6 6.7190 -3.4657 -3.1183 14 6 7.2700 -3.6862 -4.5035 15 1 6.9126 -4.5112 -5.1019 16 6 8.2305 -2.8348 -5.0070 17 7 8.6654 -1.8298 -4.2786 18 14 8.9130 -3.1077 -6.7243 19 1 8.0898 -2.3605 -7.7087 20 1 10.3155 -2.6231 -6.7824 21 1 8.8764 -4.5568 -7.0469 22 6 2.2012 -1.2009 0.0005 23 8 1.5234 -2.3788 0.0016 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6584 2.1315 -0.0007 28 1 4.1194 2.1331 0.0001 29 1 5.3552 0.0042 -0.0089 30 1 5.3634 -2.3292 0.3533 31 1 3.8478 -3.2100 0.6621 32 1 4.7839 -2.3788 -2.0064 33 1 4.7123 -6.4074 -1.0692 34 1 3.7699 -5.3032 -0.0387 35 1 3.3485 -5.4943 -1.7575 36 1 6.1438 -5.5255 -2.8593 37 1 4.8669 -4.4848 -3.5336 38 1 6.2523 -2.4821 -3.0656 39 1 7.5291 -3.5229 -2.3913 40 1 9.3414 -1.2311 -4.6327 41 1 1.3269 -2.7203 -0.8815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:48 Heat of formation + Delta-G solvation = -44.936617 kcal Electronic energy + Delta-G solvation = -19674.478759 eV Core-core repulsion = 16746.282533 eV Total energy + Delta-G solvation = -2928.196226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.96224 -37.11856 -36.44694 -33.81417 -32.79251 -31.36104 -29.68930 -28.77218 -26.80126 -25.46115 -24.42549 -21.83702 -21.38935 -20.60779 -19.50093 -18.10707 -16.50127 -16.02616 -15.81088 -15.22367 -15.06343 -14.51958 -14.32621 -13.88918 -13.39372 -13.22413 -12.76976 -12.67777 -12.53294 -12.39628 -12.15029 -11.89996 -11.66166 -11.57911 -11.41467 -11.25121 -10.97309 -10.85470 -10.50940 -10.37564 -10.11192 -9.76614 -9.28453 -9.04528 -8.62117 -8.41410 -8.36861 -7.98556 -6.01910 -4.03872 1.34064 1.36635 3.31054 3.37342 3.40782 3.64569 4.41916 4.44913 4.67275 4.80902 4.88633 5.10288 5.27190 5.34180 5.44130 5.53128 5.55961 5.56712 5.65603 5.73624 5.85911 5.87105 5.94840 6.06359 6.18325 6.21659 6.37649 6.47978 6.51269 6.52438 6.55831 6.65871 6.90159 6.91800 7.07792 7.49188 7.61020 7.78801 7.82492 7.89791 7.98359 8.41297 9.02821 9.60412 11.09338 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020329 B = 0.004494 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.979428 B = 6229.643073 C = 7036.560153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.111 4.111 4 C -0.127 4.127 5 C -0.102 4.102 6 C -0.099 4.099 7 C 0.101 3.899 8 N -0.681 5.681 9 C 0.083 3.917 10 H 0.037 0.963 11 C -0.135 4.135 12 C -0.114 4.114 13 C 0.020 3.980 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.127 3.873 23 O -0.493 6.493 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.352 0.648 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.260 0.740 41 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.751 3.138 9.821 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.129 4.129 4 C -0.145 4.145 5 C -0.120 4.120 6 C -0.100 4.100 7 C -0.028 4.028 8 N -0.316 5.316 9 C -0.027 4.027 10 H 0.055 0.945 11 C -0.193 4.193 12 C -0.152 4.152 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.082 3.918 23 O -0.303 6.303 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.173 0.827 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.202 3.014 10.469 17.900 hybrid contribution 1.467 0.296 -1.390 2.043 sum -12.735 3.311 9.078 15.987 Atomic orbital electron populations 1.20647 0.90988 1.02787 1.02125 1.20188 0.96509 0.92690 1.02706 1.20885 0.94182 0.96962 1.00890 1.21096 0.94167 0.98062 1.01166 1.21076 1.00210 0.91599 0.99147 1.20208 0.93229 0.95506 1.01087 1.20791 0.97162 0.92413 0.92427 1.60636 1.58303 1.06492 1.06159 1.21608 0.93417 0.89121 0.98533 0.94474 1.21777 0.99633 0.97203 1.00696 1.21827 0.99300 1.00828 0.93232 1.19126 0.92895 0.93119 0.96526 1.21240 1.21658 1.12440 1.00410 0.92685 1.25020 0.96602 0.95212 0.97566 1.69961 1.30355 1.16247 1.36955 0.86604 0.78218 0.78453 0.84799 1.20654 1.21263 1.19881 1.18027 0.89078 0.84872 0.99844 1.84660 1.76036 1.35859 1.33792 0.91498 0.91026 0.91865 0.86089 0.85954 0.85633 0.94645 0.90169 0.82667 0.93126 0.93619 0.92455 0.92734 0.92517 0.96698 0.96991 0.93050 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.79 36.01 0.35 -0.70 16 2 C -0.12 -1.48 5.89 -104.47 -0.62 -2.10 16 3 C -0.11 -1.30 9.70 -39.61 -0.38 -1.68 16 4 C -0.13 -1.57 10.04 -39.56 -0.40 -1.96 16 5 C -0.10 -1.42 9.67 -39.61 -0.38 -1.80 16 6 C -0.10 -1.45 5.41 -104.47 -0.56 -2.01 16 7 C 0.10 1.53 5.27 -4.97 -0.03 1.50 16 8 N -0.68 -11.27 6.30 -107.99 -0.68 -11.95 16 9 C 0.08 1.42 2.65 -67.71 -0.18 1.24 16 10 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 11 C -0.14 -1.97 9.41 37.16 0.35 -1.62 16 12 C -0.11 -2.33 4.74 -26.73 -0.13 -2.45 16 13 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 14 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 22 C 0.13 1.74 6.65 -39.22 -0.26 1.48 16 23 O -0.49 -6.29 11.78 -19.44 -0.23 -6.52 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.13 1.71 8.04 -52.49 -0.42 1.29 16 30 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 31 H 0.08 1.20 7.15 -51.93 -0.37 0.83 16 32 H 0.35 6.62 6.46 -39.30 -0.25 6.36 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.62 7.45 -51.93 -0.39 0.24 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.01 0.39 6.43 -51.93 -0.33 0.06 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.39 4.03 9.06 45.56 0.41 4.44 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -30.21 337.77 -8.79 -39.00 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.91 Total: 6.87 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -2.78 Total: -23.13 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.06 Total: -37.93 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.23 Total: -6.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.21 -8.79 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.940 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds